-
1
-
-
0034659815
-
Proteomics to study genes and genomes
-
Pandey A, Mann M (2000) Proteomics to study genes and genomes. Nature 405: 837-846
-
(2000)
Nature
, vol.405
, pp. 837-846
-
-
Pandey, A.1
Mann, M.2
-
2
-
-
0037434980
-
From genomics to proteomics
-
Tyers M, Mann M (2003) From genomics to proteomics. Nature 422:193-197
-
(2003)
Nature
, vol.422
, pp. 193-197
-
-
Tyers, M.1
Mann, M.2
-
3
-
-
68349148249
-
From cells, secrets of the secretome leak out
-
May M (2009) From cells, secrets of the secretome leak out. Nat Med 15:828
-
(2009)
Nat Med
, vol.15
, pp. 828
-
-
May, M.1
-
4
-
-
0021474773
-
Protein translocation across the endoplasmic reticulum
-
Walter P, Gilmore R, Blobel G (1984) Protein translocation across the endoplasmic reticulum. Cell 38:5-8
-
(1984)
Cell
, vol.38
, pp. 5-8
-
-
Walter, P.1
Gilmore, R.2
Blobel, G.3
-
5
-
-
0038701886
-
The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes
-
Nickel W (2003) The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes. Eur J Biochem 270:2109-2119
-
(2003)
Eur J Biochem
, vol.270
, pp. 2109-2119
-
-
Nickel, W.1
-
6
-
-
78349311747
-
Cancer secretomics reveal pathophysiological pathways in cancer molecular oncology
-
Karagiannis GS, Pavlou MP, Diamandis EP (2010) Cancer secretomics reveal pathophysiological pathways in cancer molecular oncology. Mol Oncol 4:496-510
-
(2010)
Mol Oncol
, vol.4
, pp. 496-510
-
-
Karagiannis, G.S.1
Pavlou, M.P.2
Diamandis, E.P.3
-
7
-
-
77957755656
-
Secretome proteomics for discovery of cancer biomarkers
-
Makridakis M, Vlahou A (2010) Secretome proteomics for discovery of cancer biomarkers. J Proteomics 73:2291-2305
-
(2010)
J Proteomics
, vol.73
, pp. 2291-2305
-
-
Makridakis, M.1
Vlahou, A.2
-
8
-
-
53549091303
-
The cancer secretome: A reservoir of biomarkers
-
Xue H, Lu B, Lai M (2008) The cancer secretome: a reservoir of biomarkers. J Transl Med 6:1-12
-
(2008)
J Transl Med
, vol.6
, pp. 1-12
-
-
Xue, H.1
Lu, B.2
Lai, M.3
-
9
-
-
77956419405
-
The cancer cell secretome: A good source for discovering biomarkers
-
Pavlou MP, Diamandis EP (2010) The cancer cell secretome: a good source for discovering biomarkers J Proteomics 73:1896-1906
-
(2010)
J Proteomics
, vol.73
, pp. 1896-1906
-
-
Pavlou, M.P.1
Diamandis, E.P.2
-
10
-
-
84859220149
-
Secreted proteins as a fundamental source for biomarker discovery
-
Stastna M, Van Eyk JE (2012) Secreted proteins as a fundamental source for biomarker discovery. Proteomics 12:1-14
-
(2012)
Proteomics
, vol.12
, pp. 1-14
-
-
Stastna, M.1
Van Eyk, J.E.2
-
11
-
-
79551493048
-
Conditioned media from cell lines: A complementary model to clinical specimens for the discovery of diseasespeci fi c biomarkers
-
Dowling P, Clynes M (2011) Conditioned media from cell lines: a complementary model to clinical specimens for the discovery of diseasespeci fi c biomarkers. Proteomics 11:794-804
-
(2011)
Proteomics
, vol.11
, pp. 794-804
-
-
Dowling, P.1
Clynes, M.2
-
12
-
-
79551476407
-
Mapping of the secretome of primary isolates of mammalian cells, stem cells and derived cell lines
-
Skalnikova H, Motlik J, Gadher SJ, Kovarova H (2011) Mapping of the secretome of primary isolates of mammalian cells, stem cells and derived cell lines. Proteomics 11:691-708
-
(2011)
Proteomics
, vol.11
, pp. 691-708
-
-
Skalnikova, H.1
Motlik, J.2
Gadher, S.J.3
Kovarova, H.4
-
13
-
-
17844371703
-
Biomarkers: Mining the bio fl uid proteome
-
Veenstra TD, Conrads TP, Hood BL, Avellino AM, Ellenbogen RG, Morrison RS (2005) Biomarkers: mining the bio fl uid proteome. Mol Cell Proteomics 4: 409-418
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 409-418
-
-
Veenstra, T.D.1
Conrads, T.P.2
Hood, B.L.3
Avellino, A.M.4
Ellenbogen, R.G.5
Morrison, R.S.6
-
14
-
-
77956112961
-
Recommendations for biomarker identi fi cation and quali fi cation in clinical proteomics
-
Mischak H, Allmaier G, Apweiler R et al (2010) Recommendations for biomarker identi fi cation and quali fi cation in clinical proteomics. Sci Transl Med 2:46ps42
-
(2010)
Sci Transl Med
, vol.2
-
-
Mischak, H.1
Allmaier, G.2
Apweiler, R.3
-
15
-
-
0036744406
-
Proteome analysis of conditioned medium from mouse embryonic fi broblast feeder layers which support the growth of human embryonic stem cells
-
Lim JWE, Bodnar A (2002) Proteome analysis of conditioned medium from mouse embryonic fi broblast feeder layers which support the growth of human embryonic stem cells. Proteomics 2: 1187-1203
-
(2002)
Proteomics
, vol.2
, pp. 1187-1203
-
-
Lim, J.W.E.1
Bodnar, A.2
-
16
-
-
77950660594
-
Proteomic analysis of tumor necrosis factor-alpha-induced secretome of human adipose tissue-derived mesenchymal stem cells
-
Lee MJ, Kim J, Kim MY et al (2010) Proteomic analysis of tumor necrosis factor-alpha-induced secretome of human adipose tissue-derived mesenchymal stem cells. J Proteome Res 9:1754-1762
-
(2010)
J Proteome Res
, vol.9
, pp. 1754-1762
-
-
Lee, M.J.1
Kim, J.2
Kim, M.Y.3
-
17
-
-
84860481473
-
Proteomic pro fi ling of human melanoma metastatic cell line secretomes
-
Rocco M, Malorni L, Cozzolino R et al (2011) Proteomic pro fi ling of human melanoma metastatic cell line secretomes. J Proteome Res 10: 4703-4714
-
(2011)
J Proteome Res
, vol.10
, pp. 4703-4714
-
-
Rocco, M.1
Malorni, L.2
Cozzolino, R.3
-
18
-
-
80054004001
-
Temporal proteomic pro fi ling of embryonic stem cell secretome during cardiac and neural differentiation
-
Farina A, D'Aniello C, Severino V et al (2011) Temporal proteomic pro fi ling of embryonic stem cell secretome during cardiac and neural differentiation. Proteomics 11:3972-3982
-
(2011)
Proteomics
, vol.11
, pp. 3972-3982
-
-
Farina, A.1
D'Aniello, C.2
Severino, V.3
-
19
-
-
84892700718
-
Immunoscreening of the extracellular proteome of colorectal cancer cells
-
Klein-Scory S, Kubler S, Diehl H et al (2010) Immunoscreening of the extracellular proteome of colorectal cancer cells. BMC Cancer 70:1-19
-
(2010)
BMC Cancer
, vol.70
, pp. 1-19
-
-
Klein-Scory, S.1
Kubler, S.2
Diehl, H.3
-
20
-
-
77953694179
-
Proteomic studies of cholangiocarcinoma and hepatocellular carcinoma cell secretomes
-
Srisomsap C, Sawangareetrakul P, Subhasitanont P et al (2010) Proteomic studies of cholangiocarcinoma and hepatocellular carcinoma cell secretomes. J Biomed Biotechnol 2010:437143
-
(2010)
J Biomed Biotechnol
, vol.2010
, pp. 437143
-
-
Srisomsap, C.1
Sawangareetrakul, P.2
Subhasitanont, P.3
-
21
-
-
78649886055
-
Identi fi cation of the amyloid beta-protein precursor and cystatin C as novel epidermal growth factor receptor regulated secretory proteins in nasopharyngeal carcinoma by proteomics
-
Tang CE, Guan YJ, Yi B et al (2010) Identi fi cation of the amyloid beta-protein precursor and cystatin C as novel epidermal growth factor receptor regulated secretory proteins in nasopharyngeal carcinoma by proteomics. J Proteome Res 9:6101-6111
-
(2010)
J Proteome Res
, vol.9
, pp. 6101-6111
-
-
Tang, C.E.1
Guan, Y.J.2
Yi, B.3
-
22
-
-
77957350375
-
Proteomic analysis identi fi cation of a pattern of shared alterations in the secretome of dermal fi broblasts from systemic sclerosis and nephrogenic systemic fi brosis
-
Del Galdo F, Shaw MA, Jimenez SA (2010) Proteomic analysis identi fi cation of a pattern of shared alterations in the secretome of dermal fi broblasts from systemic sclerosis and nephrogenic systemic fi brosis. Am J Pathol 177:1638-1646
-
(2010)
Am J Pathol
, vol.177
, pp. 1638-1646
-
-
Del Galdo, F.1
Shaw, M.A.2
Jimenez, S.A.3
-
23
-
-
79957664139
-
Secretome analysis of rat adipose tissues shows location-speci fi c roles for each depot type
-
Roca-Rivada A, Alonso J, Al-Massadi O et al (2011) Secretome analysis of rat adipose tissues shows location-speci fi c roles for each depot type. J Proteomics 74: 1068-1079
-
(2011)
J Proteomics
, vol.74
, pp. 1068-1079
-
-
Roca-Rivada, A.1
Alonso, J.2
Al-Massadi, O.3
-
24
-
-
67049172121
-
Secretome-based proteomic pro fi ling of Rastransformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition
-
Mathias RA, Wang B, Ji H et al (2009) Secretome-based proteomic pro fi ling of Rastransformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition. J Proteome Res 8:2827-2837
-
(2009)
J Proteome Res
, vol.8
, pp. 2827-2837
-
-
Mathias, R.A.1
Wang, B.2
Ji, H.3
-
25
-
-
84856704752
-
Proteome analysis during chondrocyte differentiation in a new chondrogenesis model using human umbilical cord stroma mesenchymal stem cells
-
De la Fuente A, Mateos J, Lesende-Rodriguez I et al (2012) Proteome analysis during chondrocyte differentiation in a new chondrogenesis model using human umbilical cord stroma mesenchymal stem cells. Mol Cell Proteomics 11:M111.010496
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
De La Fuente, A.1
Mateos, J.2
Lesende-Rodriguez, I.3
-
26
-
-
70349760656
-
High-resolution twodimensional electrophoresis
-
Weiss W, Gorg A (2009) High-resolution twodimensional electrophoresis. Methods Mol Biol 564:13-32
-
(2009)
Methods Mol Biol
, vol.564
, pp. 13-32
-
-
Weiss, W.1
Gorg, A.2
-
27
-
-
84858146882
-
Proteomic pro fi ling of the epithelial-mesenchymal transition using 2D DIGE
-
Mathias RA, Ji H, Simpson RJ (2012) Proteomic pro fi ling of the epithelial-mesenchymal transition using 2D DIGE. Methods Mol Biol 854:269-286
-
(2012)
Methods Mol Biol
, vol.854
, pp. 269-286
-
-
Mathias, R.A.1
Ji, H.2
Simpson, R.J.3
-
28
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1:2856-2860
-
(2006)
Nat Protoc
, vol.1
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
29
-
-
3042692704
-
Feature-based prediction of non-classical and leaderless protein secretion
-
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S (2004) Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel 17:349-356
-
(2004)
Protein Eng des Sel
, vol.17
, pp. 349-356
-
-
Bendtsen, J.D.1
Jensen, L.J.2
Blom, N.3
Von Heijne, G.4
Brunak, S.5
-
31
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
Bantscheff M, Schirle M, Sweetman G, Rick J, Kuster B (2007) Quantitative mass spectrometry in proteomics: a critical review. Anal Bioanal Chem 389:1017-1031
-
(2007)
Anal Bioanal Chem
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
32
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
-
33
-
-
79952201330
-
Instruments and methods in proteomics
-
May C, Brosseron F, Chartowski P, Schumbrutzki C, Schoenebeck B, Marcus K (2011) Instruments and methods in proteomics. Methods Mol Biol 696:3-26
-
(2011)
Methods Mol Biol
, vol.696
, pp. 3-26
-
-
May, C.1
Brosseron, F.2
Chartowski, P.3
Schumbrutzki, C.4
Schoenebeck, B.5
Marcus, K.6
-
34
-
-
78649844980
-
Proteomics technologies for the global identi fi cation and quanti fi cation of proteins
-
Brewis IA, Brennan P (2010) Proteomics technologies for the global identi fi cation and quanti fi cation of proteins. Adv Protein Chem Struct Biol 80:1-44
-
(2010)
Adv Protein Chem Struct Biol
, vol.80
, pp. 1-44
-
-
Brewis, I.A.1
Brennan, P.2
-
35
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann M (2006) Functional and quantitative proteomics using SILAC. Nat Rev Mol Cell Biol 7:952-958
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
36
-
-
84859807729
-
Stable isotope labeling with amino acids in cell culture (SILAC)-based quantitative proteomics study of a thyroid hormone-regulated secretome in human hepatoma cells
-
Chen CY, Chi LM, Chi HC et al (2012) Stable isotope labeling with amino acids in cell culture (SILAC)-based quantitative proteomics study of a thyroid hormone-regulated secretome in human hepatoma cells. Mol Cell Proteomics 11:M111.011270
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Chen, C.Y.1
Chi, L.M.2
Chi, H.C.3
-
37
-
-
78049240516
-
SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome
-
Kashyap MK, Harsha HC, Renuse S et al (2010) SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biol Ther 10:796-810
-
(2010)
Cancer Biol Ther
, vol.10
, pp. 796-810
-
-
Kashyap, M.K.1
Harsha, H.C.2
Renuse, S.3
-
38
-
-
31644434206
-
Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach
-
Gronborg M, Kristiansen TZ, Iwahori A et al (2006) Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach. Mol Cell Proteomics 5:157-171
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 157-171
-
-
Gronborg, M.1
Kristiansen, T.Z.2
Iwahori, A.3
-
39
-
-
79959922706
-
Secretome signature of invasive glioblastoma multiforme
-
Formolo CA, Williams R, Gordish-Dressman H, MacDonald TJ, Lee NH, Hathout Y (2011) Secretome signature of invasive glioblastoma multiforme. J Proteome Res 10:3149-3159
-
(2011)
J Proteome Res
, vol.10
, pp. 3149-3159
-
-
Formolo, C.A.1
Williams, R.2
Gordish-Dressman, H.3
Macdonald, T.J.4
Lee, N.H.5
Hathout, Y.6
-
40
-
-
79961226423
-
Metabolic labeling of chondrocytes for the quantitative analysis of the interleukin-1-betamediated modulation of their intracellular and extracellular proteomes
-
Calamia V, Rocha B, Mateos J, Fernandez- Puente P, Ruiz-Romero C, Blanco FJ (2011) Metabolic labeling of chondrocytes for the quantitative analysis of the interleukin-1-betamediated modulation of their intracellular and extracellular proteomes. J Proteome Res 10:3701-3711
-
(2011)
J Proteome Res
, vol.10
, pp. 3701-3711
-
-
Calamia, V.1
Rocha, B.2
Mateos, J.3
Fernandez- Puente, P.4
Ruiz-Romero, C.5
Blanco, F.J.6
-
41
-
-
77952083750
-
Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion
-
Greco TM, Seeholzer SH, Mak A, Spruce L, Ischiropoulos H (2010) Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion. J Proteome Res 9:2764-2774
-
(2010)
J Proteome Res
, vol.9
, pp. 2764-2774
-
-
Greco, T.M.1
Seeholzer, S.H.2
Mak, A.3
Spruce, L.4
Ischiropoulos, H.5
-
42
-
-
79955782007
-
Identi fi cation of differentially regulated secretome components during skeletal myogenesis
-
Chan CY, Masui O, Krakovska O et al (2011) Identi fi cation of differentially regulated secretome components during skeletal myogenesis. Mol Cell Proteomics 10:M110.004804
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Chan, C.Y.1
Masui, O.2
Krakovska, O.3
-
43
-
-
78149306422
-
Dynamics of the skeletal muscle secretome during myoblast differentiation
-
Henningsen J, Rigbolt KT, Blagoev B, Pedersen BK, Kratchmarova I (2010) Dynamics of the skeletal muscle secretome during myoblast differentiation. Mol Cell Proteomics 9: 2482-2496
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 2482-2496
-
-
Henningsen, J.1
Rigbolt, K.T.2
Blagoev, B.3
Pedersen, B.K.4
Kratchmarova, I.5
-
44
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN et al (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3:1154-1169
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
-
45
-
-
70349972378
-
The cell line secretome, a suitable tool for investigating proteins released in vivo by tumors: Application to the study of p53- modulated proteins secreted in lung cancer cells
-
Chenau J, Michelland S, de Fraipont F et al (2009) The cell line secretome, a suitable tool for investigating proteins released in vivo by tumors: application to the study of p53- modulated proteins secreted in lung cancer cells. J Proteome Res 8:4579-4591
-
(2009)
J Proteome Res
, vol.8
, pp. 4579-4591
-
-
Chenau, J.1
Michelland, S.2
De Fraipont, F.3
-
46
-
-
79952382501
-
Quantitative secretome analysis reveals that COL6A1 is a metastasis-associated protein using stacking gel-aided puri fi cation combined with iTRAQ labeling
-
Chiu KH, Chang YH, Wu YS, Lee SH, Liao PC (2011) Quantitative secretome analysis reveals that COL6A1 is a metastasis-associated protein using stacking gel-aided puri fi cation combined with iTRAQ labeling. J Proteome Res 10:1110-1125
-
(2011)
J Proteome Res
, vol.10
, pp. 1110-1125
-
-
Chiu, K.H.1
Chang, Y.H.2
Wu, Y.S.3
Lee, S.H.4
Liao, P.C.5
-
47
-
-
79958048266
-
Quantitative subcellular proteome and secretome pro fi ling of in fl uenza A virus-infected human primary macrophages
-
Lietzen N, Ohman T, Rintahaka J et al (2011) Quantitative subcellular proteome and secretome pro fi ling of in fl uenza A virus-infected human primary macrophages. PLoS Pathog 7:e1001340
-
(2011)
PLoS Pathog
, vol.7
-
-
Lietzen, N.1
Ohman, T.2
Rintahaka, J.3
-
48
-
-
77957373390
-
Temporal pro fi ling of the secretome during adipogenesis in humans
-
Zhong J, Krawczyk SA, Chaerkady R et al (2010) Temporal pro fi ling of the secretome during adipogenesis in humans. J Proteome Res 9:5228-5238
-
(2010)
J Proteome Res
, vol.9
, pp. 5228-5238
-
-
Zhong, J.1
Krawczyk, S.A.2
Chaerkady, R.3
-
49
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded af fi nity tags
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R (1999) Quantitative analysis of complex protein mixtures using isotope-coded af fi nity tags. Nat Biotechnol 17:994-999
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
50
-
-
33845541388
-
Proteomic identi fi cation of the wt-p53-regulated tumor cell secretome
-
Khwaja FW, Svoboda P, Reed M, Pohl J, Pyrzynska B, Van Meir EG (2006) Proteomic identi fi cation of the wt-p53-regulated tumor cell secretome. Oncogene 25:7650-7661
-
(2006)
Oncogene
, vol.25
, pp. 7650-7661
-
-
Khwaja, F.W.1
Svoboda, P.2
Reed, M.3
Pohl, J.4
Pyrzynska, B.5
Van Meir, E.G.6
-
51
-
-
82755182017
-
Analysis of secretome changes uncovers an autocrine/paracrine component in the modulation of cell proliferation and motility by c-Myc
-
Pocsfalvi G, Votta G, De Vincenzo A et al (2011) Analysis of secretome changes uncovers an autocrine/paracrine component in the modulation of cell proliferation and motility by c-Myc. J Proteome Res 10:5326-5337
-
(2011)
J Proteome Res
, vol.10
, pp. 5326-5337
-
-
Pocsfalvi, G.1
Votta, G.2
De Vincenzo, A.3
-
52
-
-
82355161388
-
Quantitative in-depth analysis of the dynamic secretome of activated Jurkat T-cells
-
Bonzon-Kulichenko E, Martinez-Martinez S, Trevisan-Herraz M, Navarro P, Redondo JM, Vazquez J (2011) Quantitative in-depth analysis of the dynamic secretome of activated Jurkat T-cells. J Proteomics 75:561-571
-
(2011)
J Proteomics
, vol.75
, pp. 561-571
-
-
Bonzon-Kulichenko, E.1
Martinez-Martinez, S.2
Trevisan-Herraz, M.3
Navarro, P.4
Redondo, J.M.5
Vazquez, J.6
-
53
-
-
61649088851
-
Comparison of isotope-labeled amino acid incorporation rates (CILAIR) provides a quantitative method to study tissue secretomes
-
Roelofsen H, Dijkstra M, Weening D, de Vries MP, Hoek A, Vonk RJ (2009) Comparison of isotope-labeled amino acid incorporation rates (CILAIR) provides a quantitative method to study tissue secretomes. Mol Cell Proteomics 8:316-324
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 316-324
-
-
Roelofsen, H.1
Dijkstra, M.2
Weening, D.3
De Vries, M.P.4
Hoek, A.5
Vonk, R.J.6
-
54
-
-
0037106398
-
Identi fi cation and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography- tandem mass spectrometry
-
Bondarenko PV, Chelius D, Shaler TA (2002) Identi fi cation and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography- tandem mass spectrometry. Anal Chem 74:4741-4749
-
(2002)
Anal Chem
, vol.74
, pp. 4741-4749
-
-
Bondarenko, P.V.1
Chelius, D.2
Shaler, T.A.3
-
55
-
-
0036665581
-
Quantitative pro fi ling of proteins in complex mixtures using liquid chromatography and mass spectrometry
-
Chelius D, Bondarenko PV (2002) Quantitative pro fi ling of proteins in complex mixtures using liquid chromatography and mass spectrometry. J Proteome Res 1:317-323
-
(2002)
J Proteome Res
, vol.1
, pp. 317-323
-
-
Chelius, D.1
Bondarenko, P.V.2
-
56
-
-
10744233766
-
Quanti fi cation of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
Wang W, Zhou H, Lin H et al (2003) Quanti fi cation of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal Chem 75:4818-4826
-
(2003)
Anal Chem
, vol.75
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
-
57
-
-
26844559000
-
Exponentially modi fi ed protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama Y, Oda Y, Tabata T et al (2005) Exponentially modi fi ed protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4:1265-1272
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
-
58
-
-
33846165487
-
Absolute protein expression pro fi ling estimates the relative contributions of transcriptional and translational regulation
-
Lu P, Vogel C, Wang R, Yao X, Marcotte EM (2007) Absolute protein expression pro fi ling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 25:117-124
-
(2007)
Nat Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
59
-
-
84355166446
-
Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics
-
Malard V, Chardan L, Roussi S et al (2012) Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics. J Proteomics 75:1043-1054
-
(2012)
J Proteomics
, vol.75
, pp. 1043-1054
-
-
Malard, V.1
Chardan, L.2
Roussi, S.3
-
60
-
-
73649116726
-
Identi fi cation of serum biomarkers for colorectal cancer metastasis using a differential secretome approach
-
Xue H, Lu B, Zhang J et al (2010) Identi fi cation of serum biomarkers for colorectal cancer metastasis using a differential secretome approach. J Proteome Res 9:545-555
-
(2010)
J Proteome Res
, vol.9
, pp. 545-555
-
-
Xue, H.1
Lu, B.2
Zhang, J.3
-
61
-
-
58149295188
-
Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: Application on angiotensin II-stimulated smooth muscle cells secretome
-
Gao BB, Stuart L, Feener EP (2008) Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: application on angiotensin II-stimulated smooth muscle cells secretome. Mol Cell Proteomics 7:2399-2409
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 2399-2409
-
-
Gao, B.B.1
Stuart, L.2
Feener, E.P.3
-
62
-
-
33747030845
-
Protein biomarker discovery and validation: The long and uncertain path to clinical utility
-
Rifai N, Gillette MA, Carr SA (2006) Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nat Biotechnol 24:971-983
-
(2006)
Nat Biotechnol
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
64
-
-
64549125924
-
Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics
-
Kitteringham NR, Jenkins RE, Lane CS, Elliott VL, Park BK (2009) Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics. J Chromatogr B Analyt Technol Biomed Life Sci 877: 1229-1239
-
(2009)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.877
, pp. 1229-1239
-
-
Kitteringham, N.R.1
Jenkins, R.E.2
Lane, C.S.3
Elliott, V.L.4
Park, B.K.5
-
65
-
-
33645753484
-
Secretory protein enrichment and analysis: An optimized approach applied on cancer cell lines using 2D LC-MS/MS
-
Mbeunkui F, Fodstad O, Pannell LK (2006) Secretory protein enrichment and analysis: an optimized approach applied on cancer cell lines using 2D LC-MS/MS. J Proteome Res 5:899-906
-
(2006)
J Proteome Res
, vol.5
, pp. 899-906
-
-
Mbeunkui, F.1
Fodstad, O.2
Pannell, L.K.3
-
66
-
-
80052524240
-
Discovery of IL-18 as a novel secreted protein contributing to doxorubicin resistance by comparative secretome analysis of MCF-7 and MCF-7/Dox
-
Yao L, Zhang Y, Chen K, Hu X, Xu LX (2011) Discovery of IL-18 as a novel secreted protein contributing to doxorubicin resistance by comparative secretome analysis of MCF-7 and MCF-7/Dox. PLoS One 6:e24684
-
(2011)
PLoS One
, vol.6
-
-
Yao, L.1
Zhang, Y.2
Chen, K.3
Hu, X.4
Xu, L.X.5
-
67
-
-
77956333493
-
Secretome analysis of multiple pancreatic cancer cell lines reveals perturbations of key functional networks
-
Schiarea S, Solinas G, Allavena P et al (2010) Secretome analysis of multiple pancreatic cancer cell lines reveals perturbations of key functional networks. J Proteome Res 9: 4376-4392
-
(2010)
J Proteome Res
, vol.9
, pp. 4376-4392
-
-
Schiarea, S.1
Solinas, G.2
Allavena, P.3
-
68
-
-
33750137036
-
Improved mass spectrometric proteomic pro fi ling of the secretome of rat vascular endothelial cells
-
Pellitteri-Hahn MC, Warren MC, Didier DN et al (2006) Improved mass spectrometric proteomic pro fi ling of the secretome of rat vascular endothelial cells. J Proteome Res 5: 2861-2864
-
(2006)
J Proteome Res
, vol.5
, pp. 2861-2864
-
-
Pellitteri-Hahn, M.C.1
Warren, M.C.2
Didier, D.N.3
-
70
-
-
76749154121
-
Identi fi cation and functionality of proteomes secreted by rat cardiac stem cells and neonatal cardiomyocytes
-
Stastna M, Chimenti I, Marban E, Van Eyk JE (2010) Identi fi cation and functionality of proteomes secreted by rat cardiac stem cells and neonatal cardiomyocytes. Proteomics 10:245-253
-
(2010)
Proteomics
, vol.10
, pp. 245-253
-
-
Stastna, M.1
Chimenti, I.2
Marban, E.3
Van Eyk, J.E.4
-
72
-
-
0032933179
-
Effect of serum starvation on expression and phosphorylation of PKC-alpha and p53 in V79 cells: Implications for cell death
-
Hasan NM, Adams GE, Joiner MC (1999) Effect of serum starvation on expression and phosphorylation of PKC-alpha and p53 in V79 cells: implications for cell death. Int J Cancer 80:400-405
-
(1999)
Int J Cancer
, vol.80
, pp. 400-405
-
-
Hasan, N.M.1
Adams, G.E.2
Joiner, M.C.3
-
73
-
-
60549100723
-
Mass spectrometric and computational analysis of cytokine-induced alterations in the astrocyte secretome
-
Keene SD, Greco TM, Parastatidis I et al (2009) Mass spectrometric and computational analysis of cytokine-induced alterations in the astrocyte secretome. Proteomics 9:768-782
-
(2009)
Proteomics
, vol.9
, pp. 768-782
-
-
Keene, S.D.1
Greco, T.M.2
Parastatidis, I.3
-
74
-
-
0021061819
-
Rapid colorimetric assay for cellular growth and survival: Application to proliferation and cytotoxicity assays
-
Mosmann T (1983) Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays. J Immunol Methods 65:55-63
-
(1983)
J Immunol Methods
, vol.65
, pp. 55-63
-
-
Mosmann, T.1
-
75
-
-
0000623131
-
Counting actively metabolizing tissue cultured cells
-
Phillips HJ, Terryberry JE (1957) Counting actively metabolizing tissue cultured cells. Exp Cell Res 13:341-347
-
(1957)
Exp Cell Res
, vol.13
, pp. 341-347
-
-
Phillips, H.J.1
Terryberry, J.E.2
-
76
-
-
53549101776
-
Secretome-based identi fi cation of Mac-2 binding protein as a potential oral cancer marker involved in cell growth and motility
-
Weng LP, Wu CC, Hsu BL et al (2008) Secretome-based identi fi cation of Mac-2 binding protein as a potential oral cancer marker involved in cell growth and motility. J Proteome Res 7:3765-3775
-
(2008)
J Proteome Res
, vol.7
, pp. 3765-3775
-
-
Weng, L.P.1
Wu, C.C.2
Hsu, B.L.3
-
77
-
-
68549133540
-
Identi fi cation of astrocyte secreted proteins with a combination of shotgun proteomics and bioinformatics
-
Dowell JA, Johnson JA, Li L (2009) Identi fi cation of astrocyte secreted proteins with a combination of shotgun proteomics and bioinformatics. J Proteome Res 8: 4135-4143
-
(2009)
J Proteome Res
, vol.8
, pp. 4135-4143
-
-
Dowell, J.A.1
Johnson, J.A.2
Li, L.3
-
78
-
-
80052028391
-
Glioblastoma cell secretome: Analysis of three glioblastoma cell lines reveal 148 non-redundant proteins
-
Polisetty RV, Gupta MK, Nair SC et al (2011) Glioblastoma cell secretome: analysis of three glioblastoma cell lines reveal 148 non-redundant proteins. J Proteomics 74:1918-1925
-
(2011)
J Proteomics
, vol.74
, pp. 1918-1925
-
-
Polisetty, R.V.1
Gupta, M.K.2
Nair, S.C.3
-
79
-
-
77952909304
-
Candidate serological biomarkers for cancer identi fi ed from the secretomes of 23 cancer cell lines and the human protein atlas
-
Wu CC, Hsu CW, Chen CD et al (2010) Candidate serological biomarkers for cancer identi fi ed from the secretomes of 23 cancer cell lines and the human protein atlas. Mol Cell Proteomics 9:1100-1117
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 1100-1117
-
-
Wu, C.C.1
Hsu, C.W.2
Chen, C.D.3
-
80
-
-
80052440879
-
Secretome compartment is a valuable source of biomarkers for cancer-relevant pathways
-
Caccia D, Zanetti Domingues L, Micciche F et al (2011) Secretome compartment is a valuable source of biomarkers for cancer-relevant pathways. J Proteome Res 10:4196-4207
-
(2011)
J Proteome Res
, vol.10
, pp. 4196-4207
-
-
Caccia, D.1
Zanetti Domingues, L.2
Micciche, F.3
-
81
-
-
59449096103
-
Comparative proteomic analysis of the insulin-induced L6 myotube secretome
-
Yoon JH, Yea K, Kim J et al (2009) Comparative proteomic analysis of the insulin-induced L6 myotube secretome. Proteomics 9:51-60
-
(2009)
Proteomics
, vol.9
, pp. 51-60
-
-
Yoon, J.H.1
Yea, K.2
Kim, J.3
-
82
-
-
33751087882
-
Identi fi cation of substrates of the extracellular protease ADAMTS1 by DIGE proteomic analysis
-
Canals F, Colome N, Ferrer C, Plaza-Calonge Mdel C, Rodriguez-Manzaneque JC (2006) Identi fi cation of substrates of the extracellular protease ADAMTS1 by DIGE proteomic analysis. Proteomics 6(Suppl 1):S28-S35
-
(2006)
Proteomics
, vol.6
, Issue.SUPPL. 1
-
-
Canals, F.1
Colome, N.2
Ferrer, C.3
Plaza-Calonge Mdel, C.4
Rodriguez-Manzaneque, J.C.5
-
83
-
-
33646250185
-
Improved mass spectrometry compatibility is afforded by ammoniacal silver staining
-
Chevallet M, Diemer H, Luche S, van Dorsselaer A, Rabilloud T, Leize-Wagner E (2006) Improved mass spectrometry compatibility is afforded by ammoniacal silver staining. Proteomics 6:2350-2354
-
(2006)
Proteomics
, vol.6
, pp. 2350-2354
-
-
Chevallet, M.1
Diemer, H.2
Luche, S.3
Van Dorsselaer, A.4
Rabilloud, T.5
Leize-Wagner, E.6
-
84
-
-
78149379326
-
Secretomebased identi fi cation and characterization of potential biomarkers in thyroid cancer
-
Kashat L, So AK, Masui O et al (2010) Secretomebased identi fi cation and characterization of potential biomarkers in thyroid cancer. J Proteome Res 9:5757-5769
-
(2010)
J Proteome Res
, vol.9
, pp. 5757-5769
-
-
Kashat, L.1
So, A.K.2
Masui, O.3
-
85
-
-
79958124136
-
Identi fi cation of proteins secreted by head and neck cancer cell lines using LC-MS/MS: Strategy for discovery of candidate serological biomarkers
-
Ralhan R, Masui O, Desouza LV, Matta A, Macha M, Siu KW (2011) Identi fi cation of proteins secreted by head and neck cancer cell lines using LC-MS/MS: strategy for discovery of candidate serological biomarkers. Proteomics 11:2363-2376
-
(2011)
Proteomics
, vol.11
, pp. 2363-2376
-
-
Ralhan, R.1
Masui, O.2
Desouza, L.V.3
Matta, A.4
Macha, M.5
Siu, K.W.6
-
86
-
-
79952242850
-
A high-quality secretome of A549 cells aided the discovery of C4b-binding protein as a novel serum biomarker for non-small cell lung cancer
-
Luo X, Liu Y, Wang R, Hu H, Zeng R, Chen H (2011) A high-quality secretome of A549 cells aided the discovery of C4b-binding protein as a novel serum biomarker for non-small cell lung cancer. J Proteomics 74: 528-538
-
(2011)
J Proteomics
, vol.74
, pp. 528-538
-
-
Luo, X.1
Liu, Y.2
Wang, R.3
Hu, H.4
Zeng, R.5
Chen, H.6
-
87
-
-
70349972788
-
Discovery of retinoblastoma-associated binding protein 46 as a novel prognostic marker for distant metastasis in nonsmall cell lung cancer by combined analysis of cancer cell secretome and pleural effusion proteome
-
Wang CL, Wang CI, Liao PC et al (2009) Discovery of retinoblastoma- associated binding protein 46 as a novel prognostic marker for distant metastasis in nonsmall cell lung cancer by combined analysis of cancer cell secretome and pleural effusion proteome. J Proteome Res 8:4428-4440
-
(2009)
J Proteome Res
, vol.8
, pp. 4428-4440
-
-
Wang, C.L.1
Wang, C.I.2
Liao, P.C.3
-
88
-
-
77953146041
-
Identi fi cation of candidate nasopharyngeal carcinoma serum biomarkers by cancer cell secretome and tissue transcriptome analysis: Potential usage of cystatin A for predicting nodal stage and poor prognosis
-
Chang KP, Wu CC, Chen HC et al (2010) Identi fi cation of candidate nasopharyngeal carcinoma serum biomarkers by cancer cell secretome and tissue transcriptome analysis: potential usage of cystatin A for predicting nodal stage and poor prognosis. Proteomics 10:2644-2660
-
(2010)
Proteomics
, vol.10
, pp. 2644-2660
-
-
Chang, K.P.1
Wu, C.C.2
Chen, H.C.3
|