-
1
-
-
84857422020
-
GenBank
-
22144687 10.1093/nar/gkr1202 1:CAS:528:DC%2BC3MXhs12hur3P
-
Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW (2012) GenBank. Nucleic Acids Res 40:D48-D53
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Clark, K.3
Lipman, D.J.4
Ostell, J.5
Sayers, E.W.6
-
2
-
-
0031762229
-
A matter of death and life: The significance of germ cell death during spermatogenesis
-
9805237 10.1046/j.1365-2605.1998.00133.x 1:STN:280:DyaK1M%2Fit1SmsQ%3D%3D
-
Blanco-Rodriguez J (1998) A matter of death and life: the significance of germ cell death during spermatogenesis. Int J Androl 21:236-248
-
(1998)
Int J Androl
, vol.21
, pp. 236-248
-
-
Blanco-Rodriguez, J.1
-
3
-
-
0027249595
-
DbEST - Database for "expressed sequence tags
-
8401577 10.1038/ng0893-332 1:CAS:528:DyaK3sXltlaktL4%3D
-
Boguski MS, Lowe TM, Tolstoshev CM (1993) dbEST - database for "expressed sequence tags". Nat Genet 4:332-333
-
(1993)
Nat Genet
, vol.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstoshev, C.M.3
-
4
-
-
2442637669
-
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
-
15123580 10.1101/gr.2195604 1:CAS:528:DC%2BD2cXjvFyktbs%3D
-
Castillo-Davis CI, Kondrashov FA, Hartl DL, Kulathinal RJ (2004) The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint. Genome Res 14:802-811
-
(2004)
Genome Res
, vol.14
, pp. 802-811
-
-
Castillo-Davis, C.I.1
Kondrashov, F.A.2
Hartl, D.L.3
Kulathinal, R.J.4
-
5
-
-
66249148986
-
Lineage-specific biology revealed by a finished genome assembly of the mouse
-
19468303 10.1371/journal.pbio.1000112
-
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z et al (2009) Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol 7:e1000112
-
(2009)
PLoS Biol
, vol.7
, pp. 1000112
-
-
Church, D.M.1
Goodstadt, L.2
Hillier, L.W.3
Zody, M.C.4
Goldstein, S.5
She, X.6
Bult, C.J.7
Agarwala, R.8
Cherry, J.L.9
Dicuccio, M.10
Hlavina, W.11
Kapustin, Y.12
Meric, P.13
Maglott, D.14
Birtle, Z.15
-
6
-
-
15544371485
-
Complex genomic rearrangements lead to novel primate gene function
-
15710750 10.1101/gr.3266405 1:CAS:528:DC%2BD2MXitVWksrY%3D
-
Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P (2005) Complex genomic rearrangements lead to novel primate gene function. Genome Res 15:343-351
-
(2005)
Genome Res
, vol.15
, pp. 343-351
-
-
Ciccarelli, F.D.1
Von Mering, C.2
Suyama, M.3
Harrington, E.D.4
Izaurralde, E.5
Bork, P.6
-
7
-
-
32544445408
-
Evolution of reproductive proteins from animals and plants
-
16388004 10.1530/rep.1.00357 1:CAS:528:DC%2BD28XhsFehu7s%3D
-
Clark NL, Aagaard JE, Swanson WJ (2006) Evolution of reproductive proteins from animals and plants. Reproduction 131:11-22
-
(2006)
Reproduction
, vol.131
, pp. 11-22
-
-
Clark, N.L.1
Aagaard, J.E.2
Swanson, W.J.3
-
8
-
-
0141853996
-
Asymmetric sequence divergence of duplicate genes
-
12952876 10.1101/gr.1252603 1:CAS:528:DC%2BD3sXnslKht7o%3D
-
Conant GC, Wagner A (2003) Asymmetric sequence divergence of duplicate genes. Genome Res 13:2052-2058
-
(2003)
Genome Res
, vol.13
, pp. 2052-2058
-
-
Conant, G.C.1
Wagner, A.2
-
9
-
-
38449119517
-
Gene duplication: A drive for phenotypic diversity and cause of human disease
-
17386002 10.1146/annurev.genom.8.021307.110233 1:CAS:528: DC%2BD2sXht1Wksr3O
-
Conrad B, Antonarakis SE (2007) Gene duplication: a drive for phenotypic diversity and cause of human disease. Annu Rev Genomics Hum Genet 8:17-35
-
(2007)
Annu Rev Genomics Hum Genet
, vol.8
, pp. 17-35
-
-
Conrad, B.1
Antonarakis, S.E.2
-
10
-
-
33847611887
-
Not born equal: Increased rate asymmetry in relocated and retrotransposed rodent gene duplicates
-
17179139 10.1093/molbev/msl199 1:CAS:528:DC%2BD2sXjtlersrs%3D
-
Cusack BP, Wolfe KH (2007) Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. Mol Biol Evol 24:679-686
-
(2007)
Mol Biol Evol
, vol.24
, pp. 679-686
-
-
Cusack, B.P.1
Wolfe, K.H.2
-
11
-
-
77951621301
-
The genome sequence of taurine cattle: A window to ruminant biology and evolution
-
19390049 10.1126/science.1169588
-
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW et al (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324:522-528
-
(2009)
Science
, vol.324
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
Gibbs, R.A.4
Muzny, D.M.5
Weinstock, G.M.6
Adelson, D.L.7
Eichler, E.E.8
Elnitski, L.9
Guigo, R.10
Hamernik, D.L.11
Kappes, S.M.12
Lewin, H.A.13
Lynn, D.J.14
Nicholas, F.W.15
-
12
-
-
77957233773
-
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
-
20447933 10.1093/molbev/msq115 1:CAS:528:DC%2BC3cXht1WhtL%2FK
-
Fletcher W, Yang Z (2010) The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection. Mol Biol Evol 27:2257-2267
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2257-2267
-
-
Fletcher, W.1
Yang, Z.2
-
13
-
-
33750997047
-
Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods
-
16959502 10.1016/j.ympev.2006.07.015 1:CAS:528:DC%2BD28Xht1CgsbjJ
-
Friedman R, Hughes AL (2007) Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods. Mol Phylogenet Evol 42:388-393
-
(2007)
Mol Phylogenet Evol
, vol.42
, pp. 388-393
-
-
Friedman, R.1
Hughes, A.L.2
-
14
-
-
33749342164
-
Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
-
17009864 10.1371/journal.pcbi.0020133
-
Goodstadt L, Ponting CP (2006) Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human. PLoS Comput Biol 2:e133
-
(2006)
PLoS Comput Biol
, vol.2
, pp. 133
-
-
Goodstadt, L.1
Ponting, C.P.2
-
15
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
20525638 10.1093/sysbio/syq010 1:CAS:528:DC%2BC3cXks1Kms7s%3D
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307-321
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
16
-
-
67849095416
-
BioMart central portal - Unified access to biological data
-
19420058 10.1093/nar/gkp265 1:CAS:528:DC%2BD1MXosFSks7Y%3D
-
Haider S, Ballester B, Smedley D, Zhang J, Rice P, Kasprzyk A (2009) BioMart central portal - unified access to biological data. Nucleic Acids Res 37:W23-W27
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Haider, S.1
Ballester, B.2
Smedley, D.3
Zhang, J.4
Rice, P.5
Kasprzyk, A.6
-
17
-
-
66049138497
-
Adaptive evolution of young gene duplicates in mammals
-
19411603 10.1101/gr.085951.108 1:CAS:528:DC%2BD1MXlsFyku7o%3D
-
Han MV, Demuth JP, McGrath CL, Casola C, Hahn MW (2009) Adaptive evolution of young gene duplicates in mammals. Genome Res 19:859-867
-
(2009)
Genome Res
, vol.19
, pp. 859-867
-
-
Han, M.V.1
Demuth, J.P.2
McGrath, C.L.3
Casola, C.4
Hahn, M.W.5
-
18
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
15654095 10.1534/genetics.104.037051
-
He X, Zhang J (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169:1157-1164
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
19
-
-
60149111590
-
Fas apoptosis inhibitory molecule contains a novel beta-sandwich in contact with a partially ordered domain
-
19168072 10.1016/j.jmb.2009.01.004 1:CAS:528:DC%2BD1MXit1Kquro%3D
-
Hemond M, Rothstein TL, Wagner G (2009) Fas apoptosis inhibitory molecule contains a novel beta-sandwich in contact with a partially ordered domain. J Mol Biol 386:1024-1037
-
(2009)
J Mol Biol
, vol.386
, pp. 1024-1037
-
-
Hemond, M.1
Rothstein, T.L.2
Wagner, G.3
-
20
-
-
67549146632
-
Genetic deletion of Faim reveals its role in modulating c-FLIP expression during CD95-mediated apoptosis of lymphocytes and hepatocytes
-
19300454 10.1038/cdd.2009.26 1:CAS:528:DC%2BD1MXnsV2qs7g%3D
-
Huo J, Xu S, Guo K, Zeng Q, Lam KP (2009) Genetic deletion of Faim reveals its role in modulating c-FLIP expression during CD95-mediated apoptosis of lymphocytes and hepatocytes. Cell Death Differ 16:1062-1070
-
(2009)
Cell Death Differ
, vol.16
, pp. 1062-1070
-
-
Huo, J.1
Xu, S.2
Guo, K.3
Zeng, Q.4
Lam, K.P.5
-
21
-
-
70349445554
-
Duplication mechanism and disruptions in flanking regions determine the fate of Mammalian gene duplicates
-
19772436 10.1089/cmb.2009.0074 1:CAS:528:DC%2BD1MXhtFGlu73O
-
Jun J, Ryvkin P, Hemphill E, Nelson C (2009) Duplication mechanism and disruptions in flanking regions determine the fate of Mammalian gene duplicates. J Comput Biol 16:1253-1266
-
(2009)
J Comput Biol
, vol.16
, pp. 1253-1266
-
-
Jun, J.1
Ryvkin, P.2
Hemphill, E.3
Nelson, C.4
-
22
-
-
57749177443
-
RNA-based gene duplication: Mechanistic and evolutionary insights
-
19030023 10.1038/nrg2487 1:CAS:528:DC%2BD1cXhsFWis7bJ
-
Kaessmann H, Vinckenbosch N, Long M (2009) RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet 10:19-31
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
23
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
12136088 10.1093/nar/gkf436 1:CAS:528:DC%2BD38XlslOqu7s%3D
-
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059-3066
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
24
-
-
29144483528
-
A retrocopy of a gene can functionally displace the source gene in evolution
-
16314324 10.1093/nar/gki969 1:CAS:528:DC%2BD2MXhtlSjurfP
-
Krasnov AN, Kurshakova MM, Ramensky VE, Mardanov PV, Nabirochkina EN, Georgieva SG (2005) A retrocopy of a gene can functionally displace the source gene in evolution. Nucleic Acids Res 33:6654-6661
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6654-6661
-
-
Krasnov, A.N.1
Kurshakova, M.M.2
Ramensky, V.E.3
Mardanov, P.V.4
Nabirochkina, E.N.5
Georgieva, S.G.6
-
25
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
11237011 10.1038/35057062 1:CAS:528:DC%2BD3MXhsFCjtLc%3D
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
-
26
-
-
33749579409
-
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins
-
16887903 10.1093/molbev/msl076 1:CAS:528:DC%2BD28XhtFWgt7jO
-
Liao BY, Scott NM, Zhang J (2006) Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Mol Biol Evol 23:2072-2080
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2072-2080
-
-
Liao, B.Y.1
Scott, N.M.2
Zhang, J.3
-
27
-
-
0037047587
-
Genomics. Gene duplication and evolution
-
12169715 10.1126/science.1075472 1:CAS:528:DC%2BD38Xmt1ClsL8%3D
-
Lynch M (2002) Genomics. Gene duplication and evolution. Science 297:945-947
-
(2002)
Science
, vol.297
, pp. 945-947
-
-
Lynch, M.1
-
28
-
-
66149086564
-
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
-
19339501 10.1073/pnas.0901855106 1:CAS:528:DC%2BD1MXlsVyhtr8%3D
-
Nozawa M, Suzuki Y, Nei M (2009) Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci USA 106:6700-6705
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 6700-6705
-
-
Nozawa, M.1
Suzuki, Y.2
Nei, M.3
-
29
-
-
33646562805
-
Rapid evolution of reproductive proteins in abalone and Drosophila
-
16612885 10.1098/rstb.2005.1793 1:CAS:528:DC%2BD28XlsVKgsL0%3D
-
Panhuis TM, Clark NL, Swanson WJ (2006) Rapid evolution of reproductive proteins in abalone and Drosophila. Philos Trans R Soc Lond B Biol Sci 361:261-268
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 261-268
-
-
Panhuis, T.M.1
Clark, N.L.2
Swanson, W.J.3
-
30
-
-
84885432704
-
Accelerated evolution after gene duplication: A time-dependent process affecting just one copy
-
23625888 10.1093/molbev/mst083 1:CAS:528:DC%2BC3sXhtFSrt7zN
-
Pegueroles C, Laurie S, Alba MM (2013) Accelerated evolution after gene duplication: a time-dependent process affecting just one copy. Mol Biol Evol 30:1830-1842
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1830-1842
-
-
Pegueroles, C.1
Laurie, S.2
Alba, M.M.3
-
31
-
-
69849097846
-
Affy exon tissues: Exon levels in normal tissues in human, mouse and rat
-
19570805 10.1093/bioinformatics/btp414 1:CAS:528:DC%2BD1MXhtFSnsrfK
-
Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS (2009) Affy exon tissues: exon levels in normal tissues in human, mouse and rat. Bioinformatics 25:2442-2443
-
(2009)
Bioinformatics
, vol.25
, pp. 2442-2443
-
-
Pohl, A.A.1
Sugnet, C.W.2
Clark, T.A.3
Smith, K.4
Fujita, P.A.5
Cline, M.S.6
-
32
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
15509596 10.1093/bioinformatics/bti079 1:CAS:528:DC%2BD2MXhslSlurs%3D
-
Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
33
-
-
49749129961
-
Confirming the phylogeny of mammals by use of large comparative sequence data sets
-
18453548 10.1093/molbev/msn104 1:CAS:528:DC%2BD1cXhtV2it7rI
-
Prasad AB, Allard MW, Green ED (2008) Confirming the phylogeny of mammals by use of large comparative sequence data sets. Mol Biol Evol 25:1795-1808
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1795-1808
-
-
Prasad, A.B.1
Allard, M.W.2
Green, E.D.3
-
34
-
-
0033821799
-
Receptor-specific regulation of B-cell susceptibility to Fas-mediated apoptosis and a novel Fas apoptosis inhibitory molecule
-
11043772 10.1034/j.1600-065X.2000.00616.x 1:CAS:528:DC%2BD3cXntFOgtL8%3D
-
Rothstein TL, Zhong X, Schram BR, Negm RS, Donohoe TJ, Cabral DS, Foote LC, Schneider TJ (2000) Receptor-specific regulation of B-cell susceptibility to Fas-mediated apoptosis and a novel Fas apoptosis inhibitory molecule. Immunol Rev 176:116-133
-
(2000)
Immunol Rev
, vol.176
, pp. 116-133
-
-
Rothstein, T.L.1
Zhong, X.2
Schram, B.R.3
Negm, R.S.4
Donohoe, T.J.5
Cabral, D.S.6
Foote, L.C.7
Schneider, T.J.8
-
35
-
-
78651313597
-
The UCSC Cancer Genomics Browser: Update 2011
-
21059681 10.1093/nar/gkq1113 1:CAS:528:DC%2BC3sXivF2lsbY%3D
-
Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J (2011) The UCSC Cancer Genomics Browser: update 2011. Nucleic Acids Res 39:D951-D959
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Sanborn, J.Z.1
Benz, S.C.2
Craft, B.3
Szeto, C.4
Kober, K.M.5
Meyer, L.6
Vaske, C.J.7
Goldman, M.8
Smith, K.E.9
Kuhn, R.M.10
Karolchik, D.11
Kent, W.J.12
Stuart, J.M.13
Haussler, D.14
Zhu, J.15
-
36
-
-
0033998940
-
Sperm antigen 6 is the murine homologue of the Chlamydomonas reinhardtii central apparatus protein encoded by the PF16 locus
-
10684790 10.1095/biolreprod62.3.511 1:CAS:528:DC%2BD3cXhsVOku7g%3D
-
Sapiro R, Tarantino LM, Velazquez F, Kiriakidou M, Hecht NB, Bucan M, Strauss JF 3rd (2000) Sperm antigen 6 is the murine homologue of the Chlamydomonas reinhardtii central apparatus protein encoded by the PF16 locus. Biol Reprod 62:511-518
-
(2000)
Biol Reprod
, vol.62
, pp. 511-518
-
-
Sapiro, R.1
Tarantino, L.M.2
Velazquez, F.3
Kiriakidou, M.4
Hecht, N.B.5
Bucan, M.6
Strauss III, J.F.7
-
37
-
-
0036334041
-
Male infertility, impaired sperm motility, and hydrocephalus in mice deficient in sperm-associated antigen 6
-
12167721 10.1128/MCB.22.17.6298-6305.2002 1:CAS:528:DC%2BD38Xmt1entLs%3D
-
Sapiro R, Kostetskii I, Olds-Clarke P, Gerton GL, Radice GL, Strauss IJ (2002) Male infertility, impaired sperm motility, and hydrocephalus in mice deficient in sperm-associated antigen 6. Mol Cell Biol 22:6298-6305
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6298-6305
-
-
Sapiro, R.1
Kostetskii, I.2
Olds-Clarke, P.3
Gerton, G.L.4
Radice, G.L.5
Strauss, I.J.6
-
38
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
2677599 1:CAS:528:DyaL1MXlvFWhtb4%3D
-
Sawyer S (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6:526-538
-
(1989)
Mol Biol Evol
, vol.6
, pp. 526-538
-
-
Sawyer, S.1
-
39
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
12529312 10.1101/gr.809403 1:CAS:528:DC%2BD3sXnvFGlsg%3D%3D
-
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W (2003) Human-mouse alignments with BLASTZ. Genome Res 13:103-107
-
(2003)
Genome Res
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
40
-
-
35448996570
-
The long form of Fas apoptotic inhibitory molecule is expressed specifically in neurons and protects them against death receptor-triggered apoptosis
-
17942717 10.1523/JNEUROSCI.3462-07.2007 1:CAS:528:DC%2BD2sXht1ekur3P
-
Segura MF, Sole C, Pascual M, Moubarak RS, Perez-Garcia MJ, Gozzelino R, Iglesias V, Badiola N, Bayascas JR, Llecha N, Rodriguez-Alvarez J, Soriano E, Yuste VJ, Comella JX (2007) The long form of Fas apoptotic inhibitory molecule is expressed specifically in neurons and protects them against death receptor-triggered apoptosis. J Neurosci 27:11228-11241
-
(2007)
J Neurosci
, vol.27
, pp. 11228-11241
-
-
Segura, M.F.1
Sole, C.2
Pascual, M.3
Moubarak, R.S.4
Perez-Garcia, M.J.5
Gozzelino, R.6
Iglesias, V.7
Badiola, N.8
Bayascas, J.R.9
Llecha, N.10
Rodriguez-Alvarez, J.11
Soriano, E.12
Yuste, V.J.13
Comella, J.X.14
-
41
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
15075390 10.1073/pnas.0400782101 1:CAS:528:DC%2BD2cXjsFKntr4%3D
-
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 101:6062-6067
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
42
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
17654362 10.1080/10635150701472164 1:CAS:528:DC%2BD2sXhtFKrs7%2FP
-
Talavera G, Castresana J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56:564-577
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
43
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
21546353 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
44
-
-
0035368224
-
Genome duplication, divergent resolution and speciation
-
11377777 10.1016/S0168-9525(01)02318-6 1:CAS:528:DC%2BD3MXjslSitLk%3D
-
Taylor JS, Van de Peer Y, Meyer A (2001) Genome duplication, divergent resolution and speciation. Trends Genet 17:299-301
-
(2001)
Trends Genet
, vol.17
, pp. 299-301
-
-
Taylor, J.S.1
Van De Peer, Y.2
Meyer, A.3
-
45
-
-
59949096873
-
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
-
19029536 10.1101/gr.073585.107 1:CAS:528:DC%2BD1MXhvVSisr8%3D
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E (2009) EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 19:327-335
-
(2009)
Genome Res
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
46
-
-
76249090489
-
BioGPS: An extensible and customizable portal for querying and organizing gene annotation resources
-
19919682 10.1186/gb-2009-10-11-r130
-
Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW 3rd, Su AI (2009) BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol 10:R130
-
(2009)
Genome Biol
, vol.10
, pp. 130
-
-
Wu, C.1
Orozco, C.2
Boyer, J.3
Leglise, M.4
Goodale, J.5
Batalov, S.6
Hodge, C.L.7
Haase, J.8
Janes, J.9
Huss III, J.W.10
Su, A.I.11
-
47
-
-
79961191745
-
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
-
21804562 10.1038/nbt.1932 1:CAS:528:DC%2BC3MXpsFKqs7s%3D
-
Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC et al (2011) The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nat Biotechnol 29:735-741
-
(2011)
Nat Biotechnol
, vol.29
, pp. 735-741
-
-
Xu, X.1
Nagarajan, H.2
Lewis, N.E.3
Pan, S.4
Cai, Z.5
Liu, X.6
Chen, W.7
Xie, M.8
Wang, W.9
Hammond, S.10
Andersen, M.R.11
Neff, N.12
Passarelli, B.13
Koh, W.14
Fan, H.C.15
-
48
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
17483113 10.1093/molbev/msm088 1:CAS:528:DC%2BD2sXpsVGrs7c%3D
-
Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
49
-
-
79952136825
-
Statistical properties of the branch-site test of positive selection
-
21087944 10.1093/molbev/msq303 1:CAS:528:DC%2BC3MXitlantbw%3D
-
Yang Z, dos Reis M (2011) Statistical properties of the branch-site test of positive selection. Mol Biol Evol 28:1217-1228
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1217-1228
-
-
Yang, Z.1
Dos Reis, M.2
-
50
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
10790415 1:CAS:528:DC%2BD3cXjslKhtb4%3D
-
Yang Z, Nielsen R, Goldman N, Pedersen AM (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
51
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
15689528 10.1093/molbev/msi097 1:CAS:528:DC%2BD2MXjtFaisbk%3D
-
Yang Z, Wong WS, Nielsen R (2005) Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol 22:1107-1118
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
52
-
-
84866910156
-
Looking for darwin in genomic sequences-validity and success of statistical methods
-
22490825 10.1093/molbev/mss104 1:CAS:528:DC%2BC38XhsVehtbzL
-
Zhai W, Nielsen R, Goldman N, Yang Z (2012) Looking for darwin in genomic sequences-validity and success of statistical methods. Mol Biol Evol 29:2889-2893
-
(2012)
Mol Biol Evol
, vol.29
, pp. 2889-2893
-
-
Zhai, W.1
Nielsen, R.2
Goldman, N.3
Yang, Z.4
-
53
-
-
0037500141
-
Evolution by gene duplication: An update
-
10.1016/S0169-5347(03)00033-8
-
Zhang J (2003) Evolution by gene duplication: an update. Trends Ecol Evol 18:292-298
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
54
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
16107592 10.1093/molbev/msi237 1:CAS:528:DC%2BD2MXht1KgtLbM
-
Zhang J, Nielsen R, Yang Z (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 22:2472-2479
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
55
-
-
0034905685
-
An alternatively spliced long form of Fas apoptosis inhibitory molecule (FAIM) with tissue-specific expression in the brain
-
11483211 10.1016/S0161-5890(01)00035-9 1:CAS:528:DC%2BD3MXlsFKjs7c%3D
-
Zhong X, Schneider TJ, Cabral DS, Donohoe TJ, Rothstein TL (2001) An alternatively spliced long form of Fas apoptosis inhibitory molecule (FAIM) with tissue-specific expression in the brain. Mol Immunol 38:65-72
-
(2001)
Mol Immunol
, vol.38
, pp. 65-72
-
-
Zhong, X.1
Schneider, T.J.2
Cabral, D.S.3
Donohoe, T.J.4
Rothstein, T.L.5
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