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Volumn 15, Issue 3, 2005, Pages 343-351

Complex genomic rearrangements lead to novel primate gene function

Author keywords

[No Author keywords available]

Indexed keywords

EXPORTIN 5; NUCLEOPORIN; PROTEIN RANBP2; UNCLASSIFIED DRUG; CHAPERONE; COMPLEMENTARY DNA; RAN BINDING PROTEIN 2; RAN-BINDING PROTEIN 2;

EID: 15544371485     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.3266405     Document Type: Article
Times cited : (94)

References (56)
  • 2
    • 0347382445 scopus 로고    scopus 로고
    • Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution
    • Babcock, M., Pavlicek, A., Spiteri, E., Kashork, C.D., Ioshikhes, I., Shaffer, L.G., Jurka, J., and Morrow, B.E. 2003. Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution. Genome Res. 13: 2519-2532.
    • (2003) Genome Res. , vol.13 , pp. 2519-2532
    • Babcock, M.1    Pavlicek, A.2    Spiteri, E.3    Kashork, C.D.4    Ioshikhes, I.5    Shaffer, L.G.6    Jurka, J.7    Morrow, B.E.8
  • 4
    • 0142059650 scopus 로고    scopus 로고
    • An Alu transposition model for the origin and expansion of human segmental duplications
    • Bailey, J.A., Liu, G., and Eichler, E.E. 2003. An Alu transposition model for the origin and expansion of human segmental duplications. Am. J. Hum. Genet. 73: 823-834.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 823-834
    • Bailey, J.A.1    Liu, G.2    Eichler, E.E.3
  • 5
    • 0029897488 scopus 로고    scopus 로고
    • PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
    • Birney, E., Thompson, J.D., and Gibson, T.J. 1996. PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids Res. 24: 2730-2739.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2730-2739
    • Birney, E.1    Thompson, J.D.2    Gibson, T.J.3
  • 6
    • 0036357721 scopus 로고    scopus 로고
    • Characterization and potential function of a novel testis-specific nucleoporin BS-63
    • Cai, Y., Gao, Y., Sheng, Q., Miao, S., Cui, X., Wang, L., Zong, S., and Koide, S.S. 2002. Characterization and potential function of a novel testis-specific nucleoporin BS-63. Mol. Reprod. Dev. 61: 126-134.
    • (2002) Mol. Reprod. Dev. , vol.61 , pp. 126-134
    • Cai, Y.1    Gao, Y.2    Sheng, Q.3    Miao, S.4    Cui, X.5    Wang, L.6    Zong, S.7    Koide, S.S.8
  • 7
    • 0035895567 scopus 로고    scopus 로고
    • Birth of two chimeric genes in the Hominidae lineage
    • Courseaux, A. and Nahon, J.L. 2001. Birth of two chimeric genes in the Hominidae lineage. Science 291: 1293-1297.
    • (2001) Science , vol.291 , pp. 1293-1297
    • Courseaux, A.1    Nahon, J.L.2
  • 8
    • 0035500899 scopus 로고    scopus 로고
    • Recent duplication, domain accretion and the dynamic mutation of the human genome
    • Eichler, E.E. 2001. Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends Genet. 17: 661-669.
    • (2001) Trends Genet. , vol.17 , pp. 661-669
    • Eichler, E.E.1
  • 9
    • 0036851314 scopus 로고    scopus 로고
    • Genomic structure and evolution of the ancestral chromosome fusion site in 2q13-2q14.1 and paralogous regions on other human chromosomes
    • Fan, Y., Linardopoulou, E., Friedman, C., Williams, E., and Trask, B.J. 2002a. Genomic structure and evolution of the ancestral chromosome fusion site in 2q13-2q14.1 and paralogous regions on other human chromosomes. Genome Res. 12: 1651-1662.
    • (2002) Genome Res. , vol.12 , pp. 1651-1662
    • Fan, Y.1    Linardopoulou, E.2    Friedman, C.3    Williams, E.4    Trask, B.J.5
  • 10
    • 0036852244 scopus 로고    scopus 로고
    • Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions
    • Fan, Y., Newman, T., Linardopoulou, E., and Trask, B.J. 2002b. Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions. Genome Res. 12: 1663-1672.
    • (2002) Genome Res. , vol.12 , pp. 1663-1672
    • Fan, Y.1    Newman, T.2    Linardopoulou, E.3    Trask, B.J.4
  • 12
    • 2642580659 scopus 로고    scopus 로고
    • Duplicate genes increase gene expression diversity within and between species
    • Gu, Z., Rifkin, S.A., White, K.P., and Li, W.H. 2004. Duplicate genes increase gene expression diversity within and between species. Nat. Genet. 36: 577-579.
    • (2004) Nat. Genet. , vol.36 , pp. 577-579
    • Gu, Z.1    Rifkin, S.A.2    White, K.P.3    Li, W.H.4
  • 13
    • 0037317323 scopus 로고    scopus 로고
    • Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p
    • Guy, J., Hearn, T., Crosier, M., Mudge, J., Viggiano, L., Koczan, D., Thiesen, H.J., Bailey, J.A., Horvath, J.E., Eichler, E.E., et al. 2003. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p. Genome Res. 13: 159-172.
    • (2003) Genome Res. , vol.13 , pp. 159-172
    • Guy, J.1    Hearn, T.2    Crosier, M.3    Mudge, J.4    Viggiano, L.5    Koczan, D.6    Thiesen, H.J.7    Bailey, J.A.8    Horvath, J.E.9    Eichler, E.E.10
  • 14
    • 0037572262 scopus 로고    scopus 로고
    • On the nature of gene innovation: Duplication patterns in microbial genomes
    • Hooper, S.D. and Berg, O.G. 2003. On the nature of gene innovation: Duplication patterns in microbial genomes. Mol. Biol. Evol. 20: 945-954.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 945-954
    • Hooper, S.D.1    Berg, O.G.2
  • 16
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W.J. 2002. BLAT - The BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 18
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., Tamura, K., Jakobsen, I.B., and Nei, M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 20
    • 0035865239 scopus 로고    scopus 로고
    • Evolutionary analyses of the human genome
    • Li, W.H., Gu, Z., Wang, H., and Nekrutenko, A. 2001. Evolutionary analyses of the human genome. Nature 409: 847-849.
    • (2001) Nature , vol.409 , pp. 847-849
    • Li, W.H.1    Gu, Z.2    Wang, H.3    Nekrutenko, A.4
  • 22
    • 0242354129 scopus 로고    scopus 로고
    • The origin of new genes: Glimpses from the young and old
    • Long, M., Betran, E., Thornton, K., and Wang, W. 2003. The origin of new genes: Glimpses from the young and old. Nat. Rev. Genet. 4: 865-875.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 865-875
    • Long, M.1    Betran, E.2    Thornton, K.3    Wang, W.4
  • 23
    • 0037423287 scopus 로고    scopus 로고
    • GRIP domain-mediated targeting of two new coiled-coil proteins, GCC88 and GCC185, to subcompartments of the trans-Golgi network
    • Luke, M.R., Kjer-Nielsen, L., Brown, D.L., Stow, J.L., and Gleeson, P.A. 2003. GRIP domain-mediated targeting of two new coiled-coil proteins, GCC88 and GCC185, to subcompartments of the trans-Golgi network. J. Biol. Chem. 278: 4216-4226.
    • (2003) J. Biol. Chem. , vol.278 , pp. 4216-4226
    • Luke, M.R.1    Kjer-Nielsen, L.2    Brown, D.L.3    Stow, J.L.4    Gleeson, P.A.5
  • 25
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M. and Conery, J.S. 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 26
    • 0036190720 scopus 로고    scopus 로고
    • Chorionic gonadotropin has a recent origin within primates and an evolutionary history of selection
    • Maston, G.A. and Ruvolo, M. 2002. Chorionic gonadotropin has a recent origin within primates and an evolutionary history of selection. Mol. Biol. Evol. 19: 320-335.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 320-335
    • Maston, G.A.1    Ruvolo, M.2
  • 28
    • 0033535585 scopus 로고    scopus 로고
    • The GRIP domain - A novel Golgi-targeting domain found in several coiled-coil proteins
    • Munro, S. and Nichols, B.J., 1999. The GRIP domain - A novel Golgi-targeting domain found in several coiled-coil proteins. Curr. Biol. 9: 377-380.
    • (1999) Curr. Biol. , vol.9 , pp. 377-380
    • Munro, S.1    Nichols, B.J.2
  • 29
    • 0030716471 scopus 로고    scopus 로고
    • Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
    • Nadeau, J.H. and Sankoff, D. 1997. Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics 147: 1259-1266.
    • (1997) Genetics , vol.147 , pp. 1259-1266
    • Nadeau, J.H.1    Sankoff, D.2
  • 30
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R. and Yang, Z. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 31
    • 0032006861 scopus 로고    scopus 로고
    • Identification of a novel Ran binding protein 2 related gene (RANBP2L1) and detection of a gene cluster on human chromosome 2q11-q12
    • Nothwang, H.G., Rensing, C., Kubler, M., Denich, D., Brandl, B., Stubanus, M., Haaf, T., Kurnit, D., and Hildebrandt, F. 1998. Identification of a novel Ran binding protein 2 related gene (RANBP2L1) and detection of a gene cluster on human chromosome 2q11-q12. Genomics 47: 383-392.
    • (1998) Genomics , vol.47 , pp. 383-392
    • Nothwang, H.G.1    Rensing, C.2    Kubler, M.3    Denich, D.4    Brandl, B.5    Stubanus, M.6    Haaf, T.7    Kurnit, D.8    Hildebrandt, F.9
  • 32
  • 33
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp, B., Pal, C., and Hurst, L.D. 2003. Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197.
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 34
    • 0345184332 scopus 로고    scopus 로고
    • The Tre2 (USP6) oncogene is a hominoid-specific gene
    • Paulding, C.A., Ruvolo, M., and Haber, D.A. 2003. The Tre2 (USP6) oncogene is a hominoid-specific gene. Proc. Natl. Acad. Sci. 100: 2507-2511.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 2507-2511
    • Paulding, C.A.1    Ruvolo, M.2    Haber, D.A.3
  • 35
    • 0036845822 scopus 로고    scopus 로고
    • Splitting pairs: The diverging fates of duplicated genes
    • Prince, V.E. and Pickett, F.B. 2002. Splitting pairs: The diverging fates of duplicated genes. Nat. Rev. Genet. 3: 827-837.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 827-837
    • Prince, V.E.1    Pickett, F.B.2
  • 36
    • 0036245495 scopus 로고    scopus 로고
    • Segmental duplications and the evolution of the primate genome
    • Samonte, R.V. and Eichler, E.E. 2002. Segmental duplications and the evolution of the primate genome. Nat. Rev. Genet. 3: 65-72.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 65-72
    • Samonte, R.V.1    Eichler, E.E.2
  • 39
    • 4444294287 scopus 로고    scopus 로고
    • BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments
    • Suyama, M., Torrents, D., and Bork, P. 2004. BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments. Bioinformatics 20: 1968-1970.
    • (2004) Bioinformatics , vol.20 , pp. 1968-1970
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 40
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V., and Lipman, D.J. 1997. A genomic perspective on protein families. Science 278: 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 41
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova, T.A. and Madden, T.L. 1999. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250.
    • (1999) FEMS Microbiol. Lett. , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J., Gibson, T., Plewniak, F., Jeanmougin, F., and Higgins, D. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.1    Gibson, T.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.5
  • 44
    • 0033522118 scopus 로고    scopus 로고
    • Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: Implications for nuclear transport
    • Vetter, I.R., Nowak, C., Nishimoto, T., Kuhlmann, J., and Wittinghofer, A. 1999. Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: Implications for nuclear transport. Nature 398: 39-46.
    • (1999) Nature , vol.398 , pp. 39-46
    • Vetter, I.R.1    Nowak, C.2    Nishimoto, T.3    Kuhlmann, J.4    Wittinghofer, A.5
  • 45
    • 0028893838 scopus 로고
    • How often do duplicated genes evolve new functions?
    • Walsh, J.B. 1995. How often do duplicated genes evolve new functions? Genetics 139: 421-428.
    • (1995) Genetics , vol.139 , pp. 421-428
    • Walsh, J.B.1
  • 46
    • 0029070074 scopus 로고
    • Nup358, a cytoplasmically exposed nucleoporin with peptide repeats, Ran-GTP binding sites, zinc fingers, a cyclophilin A homologous domain, and a leucine-rich region
    • Wu, J., Matunis, M.J., Kraemer, D., Blobel, G., and Coutavas, E. 1995. Nup358, a cytoplasmically exposed nucleoporin with peptide repeats, Ran-GTP binding sites, zinc fingers, a cyclophilin A homologous domain, and a leucine-rich region. J. Biol. Chem. 270: 14209-14213.
    • (1995) J. Biol. Chem. , vol.270 , pp. 14209-14213
    • Wu, J.1    Matunis, M.J.2    Kraemer, D.3    Blobel, G.4    Coutavas, E.5
  • 47
    • 0842269776 scopus 로고    scopus 로고
    • Structural basis for recruitment of GRIP domain golgin-245 by small GTPase Arl1
    • Wu, M., Lu, L., Hong, W., and Song, H. 2004. Structural basis for recruitment of GRIP domain golgin-245 by small GTPase Arl1. Nat. Struct. Mol. Biol. 11: 86-94.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 86-94
    • Wu, M.1    Lu, L.2    Hong, W.3    Song, H.4
  • 48
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 49
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang, Z. and Nielsen, R. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19: 908-917.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 50
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z., Nielsen, R., Goldman, N., and Pedersen, A.M. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 51
    • 0346734130 scopus 로고    scopus 로고
    • Organismal complexity, protein complexity, and gene duplicability
    • Yang, J., Lusk, R., and Li, W.-H. 2003. Organismal complexity, protein complexity, and gene duplicability. Proc. Natl. Acad. Sci. 100: 15661-15665.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 15661-15665
    • Yang, J.1    Lusk, R.2    Li, W.-H.3
  • 54
    • 0020027910 scopus 로고
    • The origin of man: A chromosomal pictorial legacy
    • Yunis, J.J. and Prakash, O. 1982. The origin of man: A chromosomal pictorial legacy. Science 215: 1525-1530.
    • (1982) Science , vol.215 , pp. 1525-1530
    • Yunis, J.J.1    Prakash, O.2
  • 56
    • 0036544871 scopus 로고    scopus 로고
    • Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey
    • Zhang, J., Zhang, Y.P., and Rosenberg, H.F. 2002. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nat. Genet. 30: 411-415.
    • (2002) Nat. Genet. , vol.30 , pp. 411-415
    • Zhang, J.1    Zhang, Y.P.2    Rosenberg, H.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.