메뉴 건너뛰기




Volumn 47, Issue , 2013, Pages 167-180

A systems chemical biology study of malate synthase and isocitrate lyase inhibition in Mycobacterium tuberculosis during active and NRP growth

Author keywords

Biochemical network simulations; Biological networks; Cheminformatics; Mycobacterium tuberculosis; Systems biology Chemical biology

Indexed keywords

COMPUTER SIMULATION; METABOLISM; MOLECULES; OXYGEN;

EID: 84885615964     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2013.07.002     Document Type: Article
Times cited : (16)

References (30)
  • 2
    • 0344286166 scopus 로고    scopus 로고
    • Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis
    • K. Bentrup, A. Miczak, D. Swenson, and D. Russell Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis J. Bacteriol. 181 23 1999 7161 7167
    • (1999) J. Bacteriol. , vol.181 , Issue.23 , pp. 7161-7167
    • Bentrup, K.1    Miczak, A.2    Swenson, D.3    Russell, D.4
  • 4
    • 4544312369 scopus 로고    scopus 로고
    • The transcriptional responses of Mycobacterium tuberculosis to inhibitors of metabolism
    • H. Boshoff, T. Myers, T. Copp, M. McNeil, M. Wilson, and C. Barry The transcriptional responses of Mycobacterium tuberculosis to inhibitors of metabolism J. Biol. Chem. 239 78 2004 40174 40184
    • (2004) J. Biol. Chem. , vol.239 , Issue.78 , pp. 40174-40184
    • Boshoff, H.1    Myers, T.2    Copp, T.3    McNeil, M.4    Wilson, M.5    Barry, C.6
  • 5
    • 0347296066 scopus 로고    scopus 로고
    • Assessing the performance of OMEGA with respect to retrieving bioactive conformations
    • DOI 10.1016/S1093-3263(02)00204-8, PII S1093326302002048
    • J. Boström, J.R. Greenwood, and J. Gottfries Assessing the performance of OMEGA with respect to retrieving bioactive conformations J. Mol. Graphics Modell. 21 5 2003 449 462 (Pubitemid 36120775)
    • (2003) Journal of Molecular Graphics and Modelling , vol.21 , Issue.5 , pp. 449-462
    • Bostrom, J.1    Greenwood, J.R.2    Gottfries, J.3
  • 6
    • 0242523806 scopus 로고    scopus 로고
    • The Secret Lives of the Pathogenic Mycobacteria
    • DOI 10.1146/annurev.micro.57.030502.091033
    • C.L. Cosma, D.R. Sherman, and L. Ramakrishnan The secret lives of the pathogenic mycobacteria Annu. Rev. Microbiol. 57 2003 641 676 (Pubitemid 37392957)
    • (2003) Annual Review of Microbiology , vol.57 , pp. 641-676
    • Cosma, C.L.1    Sherman, D.R.2    Ramakrishnan, L.3
  • 7
    • 67650655950 scopus 로고    scopus 로고
    • A novel in vitro multiple-stress dormancy model for Mycobacterium tuberculosis generates a lipid-loaded, drug-tolerant, dormant pathogen
    • C. Deb, C.M. Lee, V.S. Dubey, J. Daniel, B. Abomoelak, T.D. Sirakova, S. Pawar, L. Rogers, and P.E. Kolattukudy A novel in vitro multiple-stress dormancy model for Mycobacterium tuberculosis generates a lipid-loaded, drug-tolerant, dormant pathogen PLoS One 4 6 2009
    • (2009) PLoS One , vol.4 , Issue.6
    • Deb, C.1    Lee, C.M.2    Dubey, V.S.3    Daniel, J.4    Abomoelak, B.5    Sirakova, T.D.6    Pawar, S.7    Rogers, L.8    Kolattukudy, P.E.9
  • 8
    • 80054950510 scopus 로고    scopus 로고
    • Molecular dynamics simulations and drug discovery
    • J.D. Durrant, and J.A. McCammon Molecular dynamics simulations and drug discovery BMC Biol. 9 71 2011
    • (2011) BMC Biol. , vol.9 , Issue.71
    • Durrant, J.D.1    McCammon, J.A.2
  • 9
    • 33646575320 scopus 로고    scopus 로고
    • Analysis of the regulation, expression, and localisation of the isocitrate lyase from Aspergillus fumigatus, a potential target for antifungal drug development
    • DOI 10.1016/j.fgb.2006.01.015, PII S1087184506000338
    • F. Ebel, M. Schwienbacher, J. Beyer, J. Heesemann, A. Brakhage, and M. Brock Analysis of the regulation, expression, and localisation of the isocitrate lyase from Aspergillus fumigatus, a potential target for antifungal drug development Fungal Genet. Biol. 43 7 2006 476 489 (Pubitemid 43729189)
    • (2006) Fungal Genetics and Biology , vol.43 , Issue.7 , pp. 476-489
    • Ebel, F.1    Schwienbacher, M.2    Beyer, J.3    Heesemann, J.4    Brakhage, A.A.5    Brock, M.6
  • 10
    • 70449513046 scopus 로고    scopus 로고
    • A systems biology framework for modeling metabolic enzyme inhibition of Mycobacterium tuberculosis
    • X. Fang, A. Wallqvist, and J. Reifman A systems biology framework for modeling metabolic enzyme inhibition of Mycobacterium tuberculosis BMC Syst. Biol. 3 92 2009
    • (2009) BMC Syst. Biol. , vol.3 , Issue.92
    • Fang, X.1    Wallqvist, A.2    Reifman, J.3
  • 11
    • 80051708188 scopus 로고    scopus 로고
    • Modeling synergistic drug inhibition of Mycobacterium tuberculosis growth in murine macrophages
    • X. Fang, A. Wallqvist, and J. Reifman Modeling synergistic drug inhibition of Mycobacterium tuberculosis growth in murine macrophages Mol. Biosyst. 7 2011 2622 2636
    • (2011) Mol. Biosyst. , vol.7 , pp. 2622-2636
    • Fang, X.1    Wallqvist, A.2    Reifman, J.3
  • 12
    • 77951986384 scopus 로고    scopus 로고
    • Conformer generation with OMEGA: Algorithm and validation using high quality structures from the protein databank and cambridge structural database
    • P.C.D. Hawkins, A.G. Skillman, G.L. Warren, B.A. Ellingson, and M.T. Stahl Conformer generation with OMEGA: algorithm and validation using high quality structures from the protein databank and cambridge structural database J. Chem. Inf. Model. 50 2010 572 584
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 572-584
    • Hawkins, P.C.D.1    Skillman, A.G.2    Warren, G.L.3    Ellingson, B.A.4    Stahl, M.T.5
  • 13
    • 84869987609 scopus 로고    scopus 로고
    • Conformer generation with OMEGA: Learning from the data set and the analysis of failures
    • P.C.D. Hawkins, and A. Nicholls Conformer generation with OMEGA: learning from the data set and the analysis of failures J. Chem. Inf. Model. 52 2012 2919 2936
    • (2012) J. Chem. Inf. Model. , vol.52 , pp. 2919-2936
    • Hawkins, P.C.D.1    Nicholls, A.2
  • 14
    • 77957898063 scopus 로고    scopus 로고
    • Scoring functions and their evaluation methods for protein-ligand docking: Recent advances and future directions
    • S.-Y. Huang, S.Z. Grinter, and X. Zou Scoring functions and their evaluation methods for protein-ligand docking: recent advances and future directions Phys. Chem. Chem. Phys. 12 40 2010
    • (2010) Phys. Chem. Chem. Phys. , vol.12 , Issue.40
    • Huang, S.-Y.1    Grinter, S.Z.2    Zou, X.3
  • 16
    • 62649089075 scopus 로고    scopus 로고
    • BioXyce: An engineering platform for the study of cellular systems
    • E. May, and R. Schiek BioXyce: an engineering platform for the study of cellular systems IET Syst. Biol. 3 2 2009 77 89
    • (2009) IET Syst. Biol. , vol.3 , Issue.2 , pp. 77-89
    • May, E.1    Schiek, R.2
  • 17
    • 84988385768 scopus 로고    scopus 로고
    • Circuit-based models of biomolecular system dynamics
    • P. Li, L.M. Silveira, P. Feldmann, Springer Netherlands
    • E.E. May Circuit-based models of biomolecular system dynamics P. Li, L.M. Silveira, P. Feldmann, Simulation and Verification of Electronic and Biological Systems 2011 Springer Netherlands 137 156
    • (2011) Simulation and Verification of Electronic and Biological Systems , pp. 137-156
    • May, E.E.1
  • 19
    • 33748419613 scopus 로고    scopus 로고
    • Novel targets for tuberculosis drug discovery
    • DOI 10.1016/j.coph.2006.06.004, PII S1471489206001354, Anti-infectives/New Technologies
    • K. Mdluli, and M. Spigelman Novel targets for tuberculosis drug discovery Curr. Opin. Pharmacol. 6 5 2006 459 467 (Pubitemid 44340669)
    • (2006) Current Opinion in Pharmacology , vol.6 , Issue.5 , pp. 459-467
    • Mdluli, K.1    Spigelman, M.2
  • 24
    • 33646137117 scopus 로고    scopus 로고
    • Expression profiling of host pathogen interactions: How Mycobacterium tuberculosis and the macrophage adapt to one another
    • D. Schnappinger, G. Schoolnik, and S. Ehrt Expression profiling of host pathogen interactions: how Mycobacterium tuberculosis and the macrophage adapt to one another Microbes Infect. 8 2006 1132 1140
    • (2006) Microbes Infect. , vol.8 , pp. 1132-1140
    • Schnappinger, D.1    Schoolnik, G.2    Ehrt, S.3
  • 25
    • 33748605597 scopus 로고    scopus 로고
    • Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets
    • 10.1186/1742-4682-3-27
    • S. Singh, and I. Ghosh Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets Theor. Biol. Med. Model. 3 27 2006 10.1186/1742-4682-3-27
    • (2006) Theor. Biol. Med. Model. , vol.3 , Issue.27
    • Singh, S.1    Ghosh, I.2
  • 28
    • 0029976980 scopus 로고    scopus 로고
    • An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence
    • L. Wayne, and L. Hayes An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of non-replicating persistence Infect. Immun. 64 1996 2062 2069 (Pubitemid 26165667)
    • (1996) Infection and Immunity , vol.64 , Issue.6 , pp. 2062-2069
    • Wayne, L.G.1    Hayes, L.G.2
  • 29
    • 0019973896 scopus 로고
    • Glyoxylate metabolism and adaptation of Mycobacterium tuberculosis to survival under anaerobic conditions
    • L. Wayne, and K. Lin Glyoxylate metabolism and adaptation of Mycobacterium tuberculosis to survival under anaerobic conditions Infect. Immun. 37 1982 1042 1049 (Pubitemid 12056727)
    • (1982) Infection and Immunity , vol.37 , Issue.3 , pp. 1042-1049
    • Wayne, L.G.1    Lin, K.Y.2
  • 30
    • 0034780485 scopus 로고    scopus 로고
    • Nonreplicating persistence of Mycobacterium tuberculosis
    • DOI 10.1146/annurev.micro.55.1.139
    • L. Wayne, and C. Sohaskey Nonreplicating persistence of mycobacterium tuberculosis Annu. Rev. Microbiol. 55 2001 139 163 (Pubitemid 32978103)
    • (2001) Annual Review of Microbiology , vol.55 , pp. 139-163
    • Wayne, L.G.1    Sohaskey, C.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.