메뉴 건너뛰기




Volumn 3, Issue 2, 2009, Pages 77-89

BioXyce: An engineering platform for the study of cellular systems

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SIMULATIONS; CELLULAR DIFFERENTIATIONS; CELLULAR SYSTEMS; ELECTRICAL CIRCUITS; MULTICELLULAR SYSTEMS; SIMULATION ENGINES; SIMULATION RESULTS;

EID: 62649089075     PISSN: 17518849     EISSN: None     Source Type: Journal    
DOI: 10.1049/iet-syb.2007.0086     Document Type: Article
Times cited : (6)

References (29)
  • 1
    • 33846910173 scopus 로고    scopus 로고
    • 'Global reconstruction of the human metabolic network based on genomic and bibliomic data'
    • 0027-8424
    • Duarte, N.C., Becker, S.A., and Jamshidi, N.: Et al. 'Global reconstruction of the human metabolic network based on genomic and bibliomic data', Proc. Natl. Acad. Sci. USA, 2007, 104, p. 1777-1782 0027-8424
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1777-1782
    • Duarte, N.C.1    Becker, S.A.2    Jamshidi, N.3
  • 2
    • 27544448014 scopus 로고    scopus 로고
    • 'Molecular interaction map of a macrophage'
    • 'Molecular interaction map of a macrophage', AfCS research reports, 2004 p. 2-12
    • (2004) AfCS Research Reports , pp. 2-12
  • 3
    • 33745463739 scopus 로고    scopus 로고
    • 'A comprehensive map of the toll-like receptor signaling network'
    • article number 2006.0015
    • Oda, K., and Kitano, H.: 'A comprehensive map of the toll-like receptor signaling network', Mol. Syst. Biol., 2006, 2, article number 2006.0015
    • (2006) Mol. Syst. Biol. , vol.2
    • Oda, K.1    Kitano, H.2
  • 4
    • 33845368513 scopus 로고    scopus 로고
    • 'Copasi a complex pathway simulator'
    • Hoops, S., Sahle, S., and Gauges, R.: Et al. 'Copasi a complex pathway simulator', Bioinformatics, 2006, 22, p. 3067-3074
    • (2006) Bioinformatics , vol.22 , pp. 3067-3074
    • Hoops, S.1    Sahle, S.2    Gauges, R.3
  • 5
    • 0035478586 scopus 로고    scopus 로고
    • 'The virtual cell: A software environment for computational cell biology'
    • Loew, L.M., aAd Schaff, J.C.: 'The virtual cell: a software environment for computational cell biology', Trends Biotechnol., 2001, 19, p. 401-406
    • (2001) Trends Biotechnol , vol.19 , pp. 401-406
    • Loew, L.M.1    Schaff, J.C.2
  • 6
    • 24344437156 scopus 로고    scopus 로고
    • 'Microbial cell modeling via reacting diffusing particles'
    • p. 305-309
    • Plimpton, S.J., and Slepoy, A.: 'Microbial cell modeling via reacting diffusing particles', J. Phys. Conf. Ser., 2005, 16, p. 305-309 1742-6588
    • (2005) J. Phys. Conf. Ser. , vol.16 , pp. 1742-6588
    • Plimpton, S.J.1    Slepoy, A.2
  • 7
    • 33645465102 scopus 로고    scopus 로고
    • 'Multiscale hy3s: Hybrid stochastic simulation for supercomputer'
    • Salis, H., SHtiropoulos, V., and Kaznessis, Y.: 'Multiscale hy3s: hybrid stochastic simulation for supercomputer', BMC Bioinformatics, 2006, 7, (93)
    • (2006) BMC Bioinformatics , vol.7 , Issue.93
    • Salis, H.1    Sotiropoulos, V.2    Kaznessis, Y.3
  • 8
    • 0033031386 scopus 로고    scopus 로고
    • 'E-cell: Software environment for whole-cell simulation'
    • Tomita, M.S Hashimoto, K., and Takahashi, K.: Et al. 'E-cell: software environment for whole-cell simulation', Bioinformatics, 1999, 15, p. 72-84
    • (1999) Bioinformatics , vol.15 , pp. 72-84
    • Tomita, M.1    Hashimoto, K.2    Takahashi, K.3
  • 9
    • 15944372607 scopus 로고    scopus 로고
    • 'An enzyme mechanism language for the mathematical modeling of metabolic pathways'
    • Yang, C.R., Shapiro, B.E., Mjolsness, E.D., and Hatfield, G.W.: 'An enzyme mechanism language for the mathematical modeling of metabolic pathways', Bioinformatics, 2005, 21, p. 774-780
    • (2005) Bioinformatics , vol.21 , pp. 774-780
    • Yang, C.R.1    Shapiro, B.E.2    Mjolsness, E.D.3    Hatfield, G.W.4
  • 11
    • 0034175821 scopus 로고    scopus 로고
    • 'Gene regulation: Towards a circuit engineering discipline'
    • McAdams, H.HT, and Arkin, A.P.: 'Gene regulation: towards a circuit engineering discipline', Current Biol., 2000, 10, p. R318-320
    • (2000) Current Biol. , vol.10
    • McAdams, H.H.1    Arkin, A.P.2
  • 12
    • 0034447725 scopus 로고    scopus 로고
    • 'Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems'
    • Schilling, C.H., Edwards, J.S., and Letscher, D.: 'Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems', Biotechnol. Bioeng., 2000/2001, 71, (4), p. 286-306
    • (2000) Biotechnol. Bioeng. , vol.71 , Issue.4 , pp. 286-306
    • Schilling, C.H.1    Edwards, J.S.2    Letscher, D.3
  • 15
    • 0035824029 scopus 로고    scopus 로고
    • 'Regulation of gene expression in flux balance models of metabolism'
    • Covert, M.W., Schilling, C.H., and Palssson, B.: 'Regulation of gene expression in flux balance models of metabolism', J. Theor. Biol., 2001, 213, p. 73-88
    • (2001) J. Theor. Biol. , vol.213 , pp. 73-88
    • Covert, M.W.1    Schilling, C.H.2    Palssson, B.3
  • 16
    • 0033782304 scopus 로고    scopus 로고
    • 'Modeling transcriptional control in gene networks - Methods, recent results, and future directions'
    • Smolen, P., Baxter, D.A., and Byrne, J.H.: 'Modeling transcriptional control in gene networks - methods, recent results, and future directions', Bulletin Math. Biol., 2000, 62, p. 247-292
    • (2000) Bulletin Math. Biol. , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 19
    • 0037008673 scopus 로고    scopus 로고
    • 'Transcriptional regulation in constraints-based metabolic models'
    • Covert, M., and Palsson, B.: 'Transcriptional regulation in constraints-based metabolic models', J. Biol. Chem., 2002, 277, (31), p. 28058-28064
    • (2002) J. Biol. Chem. , vol.277 , Issue.31 , pp. 28058-28064
    • Covert, M.1    Palsson, B.2
  • 21
    • 0036578795 scopus 로고    scopus 로고
    • 'Network motifs in the transcriptional regulation network of Escherichia coli'
    • Shen-Orr, S.S., Milo, R., Mangan, S., and Alon, U.: 'Network motifs in the transcriptional regulation network of Escherichia coli', Nature Genetics, 2002, 31, p. 64-68
    • (2002) Nature Genetics , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 23
    • 50849112042 scopus 로고    scopus 로고
    • 'Addressing biological circuit simulation accuracy: Reachability for parameter identification and initial conditions'
    • November
    • Oishi, M., and May, E.: 'Addressing biological circuit simulation accuracy: Reachability for parameter identification and initial conditions', IEEE/NIH Life Science Systems and Applications Workship, November 2007
    • (2007) IEEE/NIH Life Science Systems and Applications Workship
    • Oishi, M.1    May, E.2
  • 25
    • 0034644270 scopus 로고    scopus 로고
    • 'The segment polarity network is a robust development module'
    • 0028-0836
    • von Dassow, G., Meir, E., Munro, E., and Odell, G.: 'The segment polarity network is a robust development module', Nature, 2000, 406, p. 188-192 0028-0836
    • (2000) Nature , vol.406 , pp. 188-192
    • von Dassow, G.1    Meir, E.2    Munro, E.3    Odell, G.4
  • 26
    • 0019133661 scopus 로고
    • 'Mutations affecting segment number and polarity in drosophila'
    • 0028-0836
    • Nussleinvolhard, C., and Wieschaus, E.: 'Mutations affecting segment number and polarity in drosophila', Nature, 1980, 287, (5785), p. 795-801 0028-0836
    • (1980) Nature , vol.287 , Issue.5785 , pp. 795-801
    • Nussleinvolhard, C.1    Wieschaus, E.2
  • 28
    • 3142517462 scopus 로고    scopus 로고
    • 'Topology and robustness in the drosophila segment polarity network'
    • Ingolia, N.: 'Topology and robustness in the drosophila segment polarity network', PLOS Biol., 2004, 2, (6), p. 805-815
    • (2004) PLOS Biol. , vol.2 , Issue.6 , pp. 805-815
    • Ingolia, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.