-
1
-
-
84869036539
-
Circadian topology of metabolism
-
Bass, J. Circadian topology of metabolism. Nature 491, 348-356 (2012).
-
(2012)
Nature
, vol.491
, pp. 348-356
-
-
Bass, J.1
-
2
-
-
0037184977
-
A web of circadian pacemakers
-
DOI 10.1016/S0092-8674(02)01225-4
-
Schibler, U. & Sassone-Corsi, P. A web of circadian pacemakers. Cell 111, 919-922 (2002). (Pubitemid 36044683)
-
(2002)
Cell
, vol.111
, Issue.7
, pp. 919-922
-
-
Schibler, U.1
Sassone-Corsi, P.2
-
3
-
-
33845611615
-
Interplay of circadian clocks and metabolic rhythms
-
DOI 10.1146/annurev.genet.40.110405.090603
-
Wijnen, H. & Young, M.W. Interplay of circadian clocks and metabolic rhythms. Annu. Rev. Genet. 40, 409-448 (2006). (Pubitemid 44956792)
-
(2006)
Annual Review of Genetics
, vol.40
, pp. 409-448
-
-
Wijnen, H.1
Young, M.W.2
-
4
-
-
84862675384
-
Central and peripheral circadian clocks in mammals
-
Mohawk, J.A., Green, C.B. & Takahashi, J.S. Central and peripheral circadian clocks in mammals. Annu. Rev. Neurosci. 35, 445-462 (2012).
-
(2012)
Annu. Rev. Neurosci.
, vol.35
, pp. 445-462
-
-
Mohawk, J.A.1
Green, C.B.2
Takahashi, J.S.3
-
5
-
-
0037194790
-
Coordination of circadian timing in mammals
-
DOI 10.1038/nature00965
-
Reppert, S.M. & Weaver, D.R. Coordination of circadian timing in mammals. Nature 418, 935-941 (2002). (Pubitemid 34976023)
-
(2002)
Nature
, vol.418
, Issue.6901
, pp. 935-941
-
-
Reppert, S.M.1
Weaver, D.R.2
-
6
-
-
77955983063
-
Circadian control of global gene expression patterns
-
Doherty, C.J. & Kay, S.A. Circadian control of global gene expression patterns. Annu. Rev. Genet. 44, 419-444 (2010).
-
(2010)
Annu. Rev. Genet.
, vol.44
, pp. 419-444
-
-
Doherty, C.J.1
Kay, S.A.2
-
7
-
-
84877929035
-
The circadian epigenome: How metabolism talks to chromatin remodeling
-
Aguilar-Arnal, L. & Sassone-Corsi, P. The circadian epigenome: how metabolism talks to chromatin remodeling. Curr. Opin. Cell Biol. 25, 170-176 (2013).
-
(2013)
Curr. Opin. Cell Biol.
, vol.25
, pp. 170-176
-
-
Aguilar-Arnal, L.1
Sassone-Corsi, P.2
-
8
-
-
84864309100
-
Clocks metabolism, and the epigenome
-
Feng, D. & Lazar, M.A. Clocks, metabolism, and the epigenome. Mol. Cell 47, 158-167 (2012).
-
(2012)
Mol. Cell
, vol.47
, pp. 158-167
-
-
Feng, D.1
Lazar, M.A.2
-
9
-
-
47749140333
-
SIRT1 Regulates Circadian Clock Gene Expression through PER2 Deacetylation
-
DOI 10.1016/j.cell.2008.06.050, PII S0092867408008374
-
Asher, G. et al. SIRT1 regulates circadian clock gene expression through PER2 deacetylation. Cell 134, 317-328 (2008). (Pubitemid 352024391)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 317-328
-
-
Asher, G.1
Gatfield, D.2
Stratmann, M.3
Reinke, H.4
Dibner, C.5
Kreppel, F.6
Mostoslavsky, R.7
Alt, F.W.8
Schibler, U.9
-
10
-
-
80053355301
-
Histone lysine demethylase JARID1a activates CLOCK-BMAL1 and infuences the circadian clock
-
DiTacchio, L. et al. Histone lysine demethylase JARID1a activates CLOCK-BMAL1 and infuences the circadian clock. Science 333, 1881-1885 (2011).
-
(2011)
Science
, vol.333
, pp. 1881-1885
-
-
Ditacchio, L.1
-
11
-
-
33746344698
-
The polycomb group protein EZH2 is required for mammalian circadian clock function
-
Etchegaray, J.P. et al. The polycomb group protein EZH2 is required for mammalian circadian clock function. J. Biol. Chem. 281, 21209-21215 (2006).
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 21209-21215
-
-
Etchegaray, J.P.1
-
12
-
-
78649886477
-
The histone methyltransferase MLL1 permits the oscillation of circadian gene expression
-
Katada, S. & Sassone-Corsi, P. The histone methyltransferase MLL1 permits the oscillation of circadian gene expression. Nat. Struct. Mol. Biol. 17, 1414-1421 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1414-1421
-
-
Katada, S.1
Sassone-Corsi, P.2
-
13
-
-
84867667011
-
Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
-
Koike, N. et al. Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 338, 349-354 (2012).
-
(2012)
Science
, vol.338
, pp. 349-354
-
-
Koike, N.1
-
14
-
-
47549088250
-
+-Dependent Deacetylase SIRT1 Modulates CLOCK-Mediated Chromatin Remodeling and Circadian Control
-
DOI 10.1016/j.cell.2008.07.002, PII S0092867408008799
-
+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control. Cell 134, 329-340 (2008). (Pubitemid 352010336)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 329-340
-
-
Nakahata, Y.1
Kaluzova, M.2
Grimaldi, B.3
Sahar, S.4
Hirayama, J.5
Chen, D.6
Guarente, L.P.7
Sassone-Corsi, P.8
-
15
-
-
0037426839
-
Rhythmic histone acetylation underlies transcription in the mammalian circadian clock
-
DOI 10.1038/nature01314
-
Etchegaray, J.P., Lee, C., Wade, P.A. & Reppert, S.M. Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature 421, 177-182 (2003). (Pubitemid 36090986)
-
(2003)
Nature
, vol.421
, Issue.6919
, pp. 177-182
-
-
Etchegaray, J.-P.1
Lee, C.2
Wade, P.A.3
Reppert, S.M.4
-
16
-
-
84870553909
-
Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome
-
Vollmers, C. et al. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab. 16, 833-845 (2012).
-
(2012)
Cell Metab.
, vol.16
, pp. 833-845
-
-
Vollmers, C.1
-
17
-
-
84870288931
-
Genome-wide RNA polymerase II profles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles
-
Le Martelot, G. et al. Genome-wide RNA polymerase II profles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biol. 10, e1001442 (2012).
-
(2012)
PLoS Biol.
, vol.10
-
-
Le Martelot, G.1
-
18
-
-
77954815303
-
3D shortcuts to gene regulation
-
Hakim, O., Sung, M.H. & Hager, G.L. 3D shortcuts to gene regulation. Curr. Opin. Cell Biol. 22, 305-313 (2010).
-
(2010)
Curr. Opin. Cell Biol.
, vol.22
, pp. 305-313
-
-
Hakim, O.1
Sung, M.H.2
Hager, G.L.3
-
19
-
-
79952370251
-
On emerging nuclear order
-
Rajapakse, I. & Groudine, M. On emerging nuclear order. J. Cell Biol. 192, 711-721 (2011).
-
(2011)
J. Cell Biol.
, vol.192
, pp. 711-721
-
-
Rajapakse, I.1
Groudine, M.2
-
20
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal, A., Lajoie, B.R., Jain, G. & Dekker, J. The long-range interaction landscape of gene promoters. Nature 489, 109-113 (2012).
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
21
-
-
80052407679
-
Chromatin boundaries, insulators, and long-range interactions in the nucleus
-
Giles, K.E., Gowher, H., Ghirlando, R., Jin, C. & Felsenfeld, G. Chromatin boundaries, insulators, and long-range interactions in the nucleus. Cold Spring Harb. Symp. Quant. Biol. 75, 79-85 (2010).
-
(2010)
Cold Spring Harb. Symp. Quant. Biol.
, vol.75
, pp. 79-85
-
-
Giles, K.E.1
Gowher, H.2
Ghirlando, R.3
Jin, C.4
Felsenfeld, G.5
-
22
-
-
84860381359
-
Transcription factories: Genetic programming in three dimensions
-
Edelman, L.B. & Fraser, P. Transcription factories: genetic programming in three dimensions. Curr. Opin. Genet. Dev. 22, 110-114 (2012).
-
(2012)
Curr. Opin. Genet. Dev.
, vol.22
, pp. 110-114
-
-
Edelman, L.B.1
Fraser, P.2
-
23
-
-
70349326007
-
Genomic interactions: Chromatin loops and gene meeting points in transcriptional regulation
-
Sexton, T., Bantignies, F. & Cavalli, G. Genomic interactions: chromatin loops and gene meeting points in transcriptional regulation. Semin. Cell Dev. Biol. 20, 849-855 (2009).
-
(2009)
Semin. Cell Dev. Biol.
, vol.20
, pp. 849-855
-
-
Sexton, T.1
Bantignies, F.2
Cavalli, G.3
-
24
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
DOI 10.1038/nrg2041, PII NRG2041
-
Lanctôt, C., Cheutin, T., Cremer, M., Cavalli, G. & Cremer, T. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat. Rev. Genet. 8, 104-115 (2007). (Pubitemid 46122840)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.2
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
25
-
-
84875190221
-
Genome architecture: Domain organization of interphase chromosomes
-
Bickmore, W.A. & van Steensel, B. Genome architecture: domain organization of interphase chromosomes. Cell 152, 1270-1284 (2013).
-
(2013)
Cell
, vol.152
, pp. 1270-1284
-
-
Bickmore, W.A.1
Van Steensel, B.2
-
26
-
-
84861095603
-
Topological domains in mammalian genomes identifed by analysis of chromatin interactions
-
Dixon, J.R. et al. Topological domains in mammalian genomes identifed by analysis of chromatin interactions. Nature 485, 376-380 (2012).
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
-
27
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
28
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora, E.P. et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485, 381-385 (2012).
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
-
29
-
-
84875200698
-
Functional implications of genome topology
-
Cavalli, G. & Misteli, T. Functional implications of genome topology. Nat. Struct. Mol. Biol. 20, 290-299 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 290-299
-
-
Cavalli, G.1
Misteli, T.2
-
30
-
-
34250352722
-
The 4C technique: The 'Rosetta stone' for genome biology in 3D?
-
DOI 10.1016/j.ceb.2007.04.008, PII S0955067407000609, Nucleus and Gene Expression
-
Ohlsson, R. & Gondor, A. The 4C technique: the 'Rosetta stone' for genome biology in 3D? Curr. Opin. Cell Biol. 19, 321-325 (2007). (Pubitemid 46908883)
-
(2007)
Current Opinion in Cell Biology
, vol.19
, Issue.3
, pp. 321-325
-
-
Ohlsson, R.1
Gondor, A.2
-
31
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
DOI 10.1038/ng1896, PII NG1896
-
Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38, 1348-1354 (2006). (Pubitemid 44646300)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
De Wit, E.6
Van Steensel, B.7
De Laat, W.8
-
32
-
-
33644617485
-
Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions
-
Ripperger, J.A. & Schibler, U. Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions. Nat. Genet. 38, 369-374 (2006).
-
(2006)
Nat. Genet.
, vol.38
, pp. 369-374
-
-
Ripperger, J.A.1
Schibler, U.2
-
33
-
-
84868097990
-
Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with e boxes and requires the proteasome
-
Stratmann, M., Suter, D.M., Molina, N., Naef, F. & Schibler, U. Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome. Mol. Cell 48, 277-287 (2012).
-
(2012)
Mol. Cell
, vol.48
, pp. 277-287
-
-
Stratmann, M.1
Suter, D.M.2
Molina, N.3
Naef, F.4
Schibler, U.5
-
34
-
-
0025630643
-
Expression of the liver-enriched transcriptional activator protein DBP follows a stringent circadian rhythm
-
Wuarin, J. & Schibler, U. Expression of the liver-enriched transcriptional activator protein DBP follows a stringent circadian rhythm. Cell 63, 1257-1266 (1990). (Pubitemid 120035074)
-
(1990)
Cell
, vol.63
, Issue.6
, pp. 1257-1266
-
-
Wuarin, J.1
Schibler, U.2
-
35
-
-
79955569948
-
Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
-
Hakim, O. et al. Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res. 21, 697-706 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 697-706
-
-
Hakim, O.1
-
37
-
-
84862778059
-
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
-
Zhang, Y. et al. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell 148, 908-921 (2012).
-
(2012)
Cell
, vol.148
, pp. 908-921
-
-
Zhang, Y.1
-
38
-
-
84859474968
-
DNA damage defnes sites of recurrent chromosomal translocations in B lymphocytes
-
Hakim, O. et al. DNA damage defnes sites of recurrent chromosomal translocations in B lymphocytes. Nature 484, 69-74 (2012).
-
(2012)
Nature
, vol.484
, pp. 69-74
-
-
Hakim, O.1
-
39
-
-
33645814398
-
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1
-
Ling, J.Q. et al. CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312, 269-272 (2006).
-
(2006)
Science
, vol.312
, pp. 269-272
-
-
Ling, J.Q.1
-
40
-
-
0037049548
-
Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH
-
DOI 10.1083/jcb.200207115
-
Mahy, N.L., Perry, P.E. & Bickmore, W.A. Gene density and transcription infuence the localization of chromatin outside of chromosome territories detectable by FISH. J. Cell Biol. 159, 753-763 (2002). (Pubitemid 36008358)
-
(2002)
Journal of Cell Biology
, vol.159
, Issue.5
, pp. 753-763
-
-
Mahy, N.L.1
Perry, P.E.2
Bickmore, W.A.3
-
41
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
DOI 10.1038/ng1891, PII NG1891
-
Zhao, Z. et al. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra-and interchromosomal interactions. Nat. Genet. 38, 1341-1347 (2006). (Pubitemid 44646299)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
Wang, S.6
Kanduri, C.7
Lezcano, M.8
Sandhu, K.S.9
Singh, U.10
Pant, V.11
Tiwari, V.12
Kurukuti, S.13
Ohlsson, R.14
-
42
-
-
84861960359
-
Revisiting higher-order and large-scale chromatin organization
-
Bian, Q. & Belmont, A.S. Revisiting higher-order and large-scale chromatin organization. Curr. Opin. Cell Biol. 24, 359-366 (2012).
-
(2012)
Curr. Opin. Cell Biol.
, vol.24
, pp. 359-366
-
-
Bian, Q.1
Belmont, A.S.2
-
43
-
-
33745593972
-
Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence
-
DOI 10.1083/jcb.200603083
-
Shopland, L.S. et al. Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence. J. Cell Biol. 174, 27-38 (2006). (Pubitemid 43992894)
-
(2006)
Journal of Cell Biology
, vol.174
, Issue.1
, pp. 27-38
-
-
Shopland, L.S.1
Lynch, C.R.2
Peterson, K.A.3
Thornton, K.4
Kepper, N.5
Von Hase, J.6
Stein, S.7
Vincent, S.8
Molloy, K.R.9
Kreth, G.10
Cremer, C.11
Bult, C.J.12
O'Brien, T.P.13
-
44
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder, S. et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat. Genet. 42, 53-61 (2010).
-
(2010)
Nat. Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
-
45
-
-
4444258534
-
Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers
-
DOI 10.1016/j.cell.2004.08.011, PII S0092867404007883
-
Gilbert, N. et al. Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fbers. Cell 118, 555-566 (2004). (Pubitemid 39179709)
-
(2004)
Cell
, vol.118
, Issue.5
, pp. 555-566
-
-
Gilbert, N.1
Boyle, S.2
Fiegler, H.3
Woodfine, K.4
Carter, N.P.5
Bickmore, W.A.6
-
46
-
-
0032510778
-
The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors
-
DOI 10.1073/pnas.95.10.5474
-
Hogenesch, J.B., Gu, Y.Z., Jain, S. & Bradfeld, C.A. The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors. Proc. Natl. Acad. Sci. USA 95, 5474-5479 (1998). (Pubitemid 28224118)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.10
, pp. 5474-5479
-
-
Hogenesch, J.B.1
Gu, Y.-Z.2
Jain, S.3
Bradfield, C.A.4
-
47
-
-
79952261359
-
Genome-wide and phase-specifc DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
-
Rey, G. et al. Genome-wide and phase-specifc DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol. 9, e1000595 (2011).
-
(2011)
PLoS Biol.
, vol.9
-
-
Rey, G.1
-
48
-
-
0034704203
-
Mop3 is an essential component of the master circadian pacemaker in mammals
-
DOI 10.1016/S0092-8674(00)00205-1
-
Bunger, M.K. et al. Mop3 is an essential component of the master circadian pacemaker in mammals. Cell 103, 1009-1017 (2000). (Pubitemid 32037390)
-
(2000)
Cell
, vol.103
, Issue.7
, pp. 1009-1017
-
-
Bunger, M.K.1
Wilsbacher, L.D.2
Moran, S.M.3
Clendenin, C.4
Radcliffe, L.A.5
Hogenesch, J.B.6
Simon M.Celeste7
Takahashi, J.S.8
Bradfield, C.A.9
-
49
-
-
84855170482
-
MotifMap: Integrative genome-wide maps of regulatory motif sites for model species
-
Daily, K., Patel, V.R., Rigor, P., Xie, X. & Baldi, P. MotifMap: integrative genome-wide maps of regulatory motif sites for model species. BMC Bioinformatics 12, 495 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 495
-
-
Daily, K.1
Patel, V.R.2
Rigor, P.3
Xie, X.4
Baldi, P.5
-
50
-
-
4544356423
-
Transcription regulation within the circadian clock: The E-box and beyond
-
DOI 10.1177/0748730404268052
-
Hardin, P.E. Transcription regulation within the circadian clock: the E-box and beyond. J. Biol. Rhythms 19, 348-360 (2004). (Pubitemid 39238204)
-
(2004)
Journal of Biological Rhythms
, vol.19
, Issue.5
, pp. 348-360
-
-
Hardin, P.E.1
-
51
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
Hadjur, S. et al. Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460, 410-413 (2009).
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
-
52
-
-
37249087838
-
Coordinate gene regulation during hematopoiesis is related to genomic organization
-
Kosak, S.T. et al. Coordinate gene regulation during hematopoiesis is related to genomic organization. PLoS Biol. 5, e309 (2007).
-
(2007)
PLoS Biol.
, vol.5
-
-
Kosak, S.T.1
-
53
-
-
84860264490
-
Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β
-
Cho, H. et al. Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β. Nature 485, 123-127 (2012).
-
(2012)
Nature
, vol.485
, pp. 123-127
-
-
Cho, H.1
-
54
-
-
84859459231
-
Coordination of the transcriptome and metabolome by the circadian clock
-
Eckel-Mahan, K.L. et al. Coordination of the transcriptome and metabolome by the circadian clock. Proc. Natl. Acad. Sci. USA 109, 5541-5546 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5541-5546
-
-
Eckel-Mahan, K.L.1
-
55
-
-
18444414586
-
Coordinated transcription of key pathways in the mouse by the circadian clock
-
DOI 10.1016/S0092-8674(02)00722-5
-
Panda, S. et al. Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109, 307-320 (2002). (Pubitemid 34606874)
-
(2002)
Cell
, vol.109
, Issue.3
, pp. 307-320
-
-
Panda, S.1
Antoch, M.P.2
Miller, B.H.3
Su, A.I.4
Schook, A.B.5
Straume, M.6
Schultz, P.G.7
Kay, S.A.8
Takahashi, J.S.9
Hogenesch, J.B.10
-
56
-
-
34447528838
-
Crosstalk between xenobiotics metabolism and circadian clock
-
DOI 10.1016/j.febslet.2007.04.009, PII S0014579307003821, Cellular Stress
-
Claudel, T., Cretenet, G., Saumet, A. & Gachon, F. Crosstalk between xenobiotics metabolism and circadian clock. FEBS Lett. 581, 3626-3633 (2007). (Pubitemid 47080999)
-
(2007)
FEBS Letters
, vol.581
, Issue.19
, pp. 3626-3633
-
-
Claudel, T.1
Cretenet, G.2
Saumet, A.3
Gachon, F.4
-
57
-
-
33745329809
-
The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxification
-
DOI 10.1016/j.cmet.2006.04.015, PII S1550413106001550
-
Gachon, F., Olela, F.F., Schaad, O., Descombes, P. & Schibler, U. The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxifcation. Cell Metab. 4, 25-36 (2006). (Pubitemid 43942254)
-
(2006)
Cell Metabolism
, vol.4
, Issue.1
, pp. 25-36
-
-
Gachon, F.1
Olela, F.F.2
Schaad, O.3
Descombes, P.4
Schibler, U.5
-
58
-
-
13944254430
-
System-level identifcation of transcriptional circuits underlying mammalian circadian clocks
-
Ueda, H.R. et al. System-level identifcation of transcriptional circuits underlying mammalian circadian clocks. Nat. Genet. 37, 187-192 (2005).
-
(2005)
Nat. Genet.
, vol.37
, pp. 187-192
-
-
Ueda, H.R.1
-
59
-
-
84874587482
-
Spatial congregation of STAT binding directs selective nuclear architecture during T cell functional differentiation
-
Hakim, O. et al. Spatial congregation of STAT binding directs selective nuclear architecture during T cell functional differentiation. Genome Res. 23, 462-472 (2013).
-
(2013)
Genome Res.
, vol.23
, pp. 462-472
-
-
Hakim, O.1
-
60
-
-
77952242784
-
The transcriptional interactome: Gene expression in 3D
-
Schoenfelder, S., Clay, I. & Fraser, P. The transcriptional interactome: gene expression in 3D. Curr. Opin. Genet. Dev. 20, 127-133 (2010).
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 127-133
-
-
Schoenfelder, S.1
Clay, I.2
Fraser, P.3
-
61
-
-
37249053976
-
CLOCK-mediated acetylation of BMAL1 controls circadian function
-
DOI 10.1038/nature06394, PII NATURE06394
-
Hirayama, J. et al. CLOCK-mediated acetylation of BMAL1 controls circadian function. Nature 450, 1086-1090 (2007). (Pubitemid 350273614)
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 1086-1090
-
-
Hirayama, J.1
Sahar, S.2
Grimaldi, B.3
Tamaru, T.4
Takamatsu, K.5
Nakahata, Y.6
Sassone-Corsi, P.7
-
62
-
-
0037067652
-
Phenotypic rescue of a peripheral clock genetic defect via SCN hierarchical dominance
-
DOI 10.1016/S0092-8674(02)00803-6
-
Pando, M.P., Morse, D., Cermakian, N. & Sassone-Corsi, P. Phenotypic rescue of a peripheral clock genetic defect via SCN hierarchical dominance. Cell 110, 107-117 (2002). (Pubitemid 34874610)
-
(2002)
Cell
, vol.110
, Issue.1
, pp. 107-117
-
-
Pando, M.P.1
Morse, D.2
Cermakian, N.3
Sassone-Corsi, P.4
-
63
-
-
78049437320
-
PER2 controls lipid metabolism by direct regulation of PPARγ
-
Grimaldi, B. et al. PER2 controls lipid metabolism by direct regulation of PPARγ. Cell Metab. 12, 509-520 (2010).
-
(2010)
Cell Metab.
, vol.12
, pp. 509-520
-
-
Grimaldi, B.1
-
64
-
-
0034730493
-
Resetting of circadian time in peripheral tissues by glucocorticoid signaling
-
Balsalobre, A. et al. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science 289, 2344-2347 (2000).
-
(2000)
Science
, vol.289
, pp. 2344-2347
-
-
Balsalobre, A.1
-
65
-
-
77957266573
-
JTK-CYCLE: An effcient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
-
Hughes, M.E., Hogenesch, J.B. & Kornacker, K. JTK-CYCLE: an effcient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J. Biol. Rhythms 25, 372-380 (2010).
-
(2010)
J. Biol. Rhythms
, vol.25
, pp. 372-380
-
-
Hughes, M.E.1
Hogenesch, J.B.2
Kornacker, K.3
-
66
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
DOI 10.1073/pnas.95.25.14863
-
Eisen, M.B., Spellman, P.T., Brown, P.O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95, 14863-14868 (1998). (Pubitemid 29003722)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
67
-
-
3142756502
-
Open source clustering software
-
DOI 10.1093/bioinformatics/bth078
-
de Hoon, M.J., Imoto, S., Nolan, J. & Miyano, S. Open source clustering software. Bioinformatics 20, 1453-1454 (2004). (Pubitemid 38931415)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
De Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
68
-
-
33747894577
-
TM4 microarray software suite
-
Saeed, A.I. et al. TM4 microarray software suite. Methods Enzymol. 411, 134-193 (2006).
-
(2006)
Methods Enzymol.
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
-
69
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A.I. et al. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378 (2003). (Pubitemid 36184095)
-
(2003)
BioTechniques
, vol.34
, Issue.2
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
70
-
-
67849088720
-
GeneCodis: Interpreting gene lists through enrichment analysis and integration of diverse biological information
-
Nogales-Cadenas, R. et al. GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37, W317-W322 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Nogales-Cadenas, R.1
-
71
-
-
33847205295
-
GENECODIS: A web-based tool for fnding signifcant concurrent annotations in gene lists
-
Carmona-Saez, P., Chagoyen, M., Tirado, F., Carazo, J.M. & Pascual-Montano, A. GENECODIS: a web-based tool for fnding signifcant concurrent annotations in gene lists. Genome Biol. 8, R3 (2007).
-
(2007)
Genome Biol.
, vol.8
-
-
Carmona-Saez, P.1
Chagoyen, M.2
Tirado, F.3
Carazo, J.M.4
Pascual-Montano, A.5
-
73
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status new features and genome annotation policy
-
Pruitt, K.D., Tatusova, T., Brown, G.R. & Maglott, D.R. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40, D130-D135 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
74
-
-
58349110961
-
MotifMap: A human genome-wide map of candidate regulatory motif sites
-
Xie, X., Rigor, P. & Baldi, P. MotifMap: a human genome-wide map of candidate regulatory motif sites. Bioinformatics 25, 167-174 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 167-174
-
-
Xie, X.1
Rigor, P.2
Baldi, P.3
-
75
-
-
0037208166
-
TRANSFAC®: Transcriptional regulation, from patterns to profiles
-
DOI 10.1093/nar/gkg108
-
Matys, V. et al. TRANSFAC: transcriptional regulation, from patterns to profles. Nucleic Acids Res. 31, 374-378 (2003). (Pubitemid 36150406)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gossling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
Kloos, D.-U.11
Land, S.12
Lewicki-Potapov, B.13
Michael, H.14
Munch, R.15
Reuter, I.16
Rotert, S.17
Saxel, H.18
Scheer, M.19
Thiele, S.20
Wingender, E.21
more..
-
76
-
-
75549083247
-
JASPAR 2010: The greatly expanded open-access database of transcription factor binding profles
-
Portales-Casamar, E. et al. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profles. Nucleic Acids Res. 38, D105-D110 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Portales-Casamar, E.1
-
77
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M. et al. Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
|