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Volumn 22, Issue 2, 2012, Pages 110-114

Transcription factories: Genetic programming in three dimensions

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84860381359     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2012.01.010     Document Type: Review
Times cited : (112)

References (41)
  • 3
    • 0027499230 scopus 로고
    • Visualization of focal sites of transcription within human nuclei
    • Jackson D.A., Hassan A.B., Errington R.J., Cook P.R. Visualization of focal sites of transcription within human nuclei. EMBO J 1993, 12:1059-1065.
    • (1993) EMBO J , vol.12 , pp. 1059-1065
    • Jackson, D.A.1    Hassan, A.B.2    Errington, R.J.3    Cook, P.R.4
  • 4
    • 0027305616 scopus 로고
    • Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus
    • Wansink D.G., Schul W., van der Kraan I., van Steensel B., van Driel R., de Jong L. Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus. J Cell Biol 1993, 122:283-293.
    • (1993) J Cell Biol , vol.122 , pp. 283-293
    • Wansink, D.G.1    Schul, W.2    van der Kraan, I.3    van Steensel, B.4    van Driel, R.5    de Jong, L.6
  • 5
    • 0029973080 scopus 로고    scopus 로고
    • Active RNA polymerases are localized within discrete transcription " factories' in human nuclei
    • Iborra F.J., Pombo A., Jackson D.A., Cook P.R. Active RNA polymerases are localized within discrete transcription " factories' in human nuclei. J Cell Sci 1996, 109(Pt 6):1427-1436.
    • (1996) J Cell Sci , vol.109 , Issue.PART 6 , pp. 1427-1436
    • Iborra, F.J.1    Pombo, A.2    Jackson, D.A.3    Cook, P.R.4
  • 6
    • 0031813779 scopus 로고    scopus 로고
    • Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei
    • Jackson D.A., Iborra F.J., Manders E.M., Cook P.R. Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei. Mol Biol Cell 1998, 9:1523-1536.
    • (1998) Mol Biol Cell , vol.9 , pp. 1523-1536
    • Jackson, D.A.1    Iborra, F.J.2    Manders, E.M.3    Cook, P.R.4
  • 7
    • 0032808150 scopus 로고    scopus 로고
    • Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure
    • Kimura H., Tao Y., Roeder R.G., Cook P.R. Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure. Mol Cell Biol 1999, 19:5383-5392.
    • (1999) Mol Cell Biol , vol.19 , pp. 5383-5392
    • Kimura, H.1    Tao, Y.2    Roeder, R.G.3    Cook, P.R.4
  • 8
    • 38149133051 scopus 로고    scopus 로고
    • Transcription factories are nuclear subcompartments that remain in the absence of transcription
    • Mitchell J.A., Fraser P. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 2008, 22:20-25.
    • (2008) Genes Dev , vol.22 , pp. 20-25
    • Mitchell, J.A.1    Fraser, P.2
  • 14
  • 15
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M., Klous P., Splinter E., Moshkin Y., Willemsen R., de Wit E., van Steensel B., de Laat W. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 2006, 38:1348-1354.
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7    de Laat, W.8
  • 16
    • 33750203582 scopus 로고    scopus 로고
    • Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
    • Zhao Z., Tavoosidana G., Sjolinder M., Gondor A., Mariano P., Wang S., Kanduri C., Lezcano M., Sandhu K.S., Singh U., et al. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet 2006, 38:1341-1347.
    • (2006) Nat Genet , vol.38 , pp. 1341-1347
    • Zhao, Z.1    Tavoosidana, G.2    Sjolinder, M.3    Gondor, A.4    Mariano, P.5    Wang, S.6    Kanduri, C.7    Lezcano, M.8    Sandhu, K.S.9    Singh, U.10
  • 18
    • 77956918460 scopus 로고    scopus 로고
    • The yin and yang of chromatin spatial organization
    • Cope N.F., Fraser P., Eskiw C.H. The yin and yang of chromatin spatial organization. Genome Biol 2010, 11:204.
    • (2010) Genome Biol , vol.11 , pp. 204
    • Cope, N.F.1    Fraser, P.2    Eskiw, C.H.3
  • 19
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: cellular organization of genome function
    • Misteli T. Beyond the sequence: cellular organization of genome function. Cell 2007, 128:787-800.
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 20
  • 21
    • 0029010790 scopus 로고
    • Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene
    • Nuez B., Michalovich D., Bygrave A., Ploemacher R., Grosveld F. Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature 1995, 375:316-318.
    • (1995) Nature , vol.375 , pp. 316-318
    • Nuez, B.1    Michalovich, D.2    Bygrave, A.3    Ploemacher, R.4    Grosveld, F.5
  • 22
    • 0028990264 scopus 로고
    • Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF
    • Perkins A.C., Sharpe A.H., Orkin S.H. Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF. Nature 1995, 375:318-322.
    • (1995) Nature , vol.375 , pp. 318-322
    • Perkins, A.C.1    Sharpe, A.H.2    Orkin, S.H.3
  • 24
    • 81355146972 scopus 로고    scopus 로고
    • Ultrastructural study of transcription factories in mouse erythroblasts
    • Eskiw C.H., Fraser P. Ultrastructural study of transcription factories in mouse erythroblasts. J Cell Sci 2011, 124:3676-3683.
    • (2011) J Cell Sci , vol.124 , pp. 3676-3683
    • Eskiw, C.H.1    Fraser, P.2
  • 25
    • 60349109666 scopus 로고    scopus 로고
    • Electron spectroscopic imaging of the nuclear landscape
    • Ahmed K., Li R., Bazett-Jones D.P. Electron spectroscopic imaging of the nuclear landscape. Methods Mol Biol 2009, 464:415-423.
    • (2009) Methods Mol Biol , vol.464 , pp. 415-423
    • Ahmed, K.1    Li, R.2    Bazett-Jones, D.P.3
  • 26
    • 47649111278 scopus 로고    scopus 로고
    • RNA polymerase II activity is located on the surface of protein-rich transcription factories
    • Eskiw C.H., Rapp A., Carter D.R., Cook P.R. RNA polymerase II activity is located on the surface of protein-rich transcription factories. J Cell Sci 2008, 121:1999-2007.
    • (2008) J Cell Sci , vol.121 , pp. 1999-2007
    • Eskiw, C.H.1    Rapp, A.2    Carter, D.R.3    Cook, P.R.4
  • 27
    • 38349043904 scopus 로고    scopus 로고
    • A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
    • Kumaran R.I., Spector D.L. A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence. J Cell Biol 2008, 180:51-65.
    • (2008) J Cell Biol , vol.180 , pp. 51-65
    • Kumaran, R.I.1    Spector, D.L.2
  • 29
    • 80255137474 scopus 로고    scopus 로고
    • The proteomes of transcription factories containing RNA polymerases I, II or III
    • Melnik S., Deng B., Papantonis A., Baboo S., Carr I.M., Cook P.R. The proteomes of transcription factories containing RNA polymerases I, II or III. Nat Methods 2011, 8:963-968.
    • (2011) Nat Methods , vol.8 , pp. 963-968
    • Melnik, S.1    Deng, B.2    Papantonis, A.3    Baboo, S.4    Carr, I.M.5    Cook, P.R.6
  • 31
    • 0033561153 scopus 로고    scopus 로고
    • Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III
    • Pombo A., Jackson D.A., Hollinshead M., Wang Z., Roeder R.G., Cook P.R. Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III. EMBO J 1999, 18:2241-2253.
    • (1999) EMBO J , vol.18 , pp. 2241-2253
    • Pombo, A.1    Jackson, D.A.2    Hollinshead, M.3    Wang, Z.4    Roeder, R.G.5    Cook, P.R.6
  • 32
    • 0028447560 scopus 로고
    • RNA polymerase: structural determinant of the chromatin loop and the chromosome
    • Cook P.R. RNA polymerase: structural determinant of the chromatin loop and the chromosome. Bioessays 1994, 16:425-430.
    • (1994) Bioessays , vol.16 , pp. 425-430
    • Cook, P.R.1
  • 35
    • 80054984337 scopus 로고    scopus 로고
    • Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
    • Yaffe E., Tanay A. Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat Genet 2011, 43:1059-1065.
    • (2011) Nat Genet , vol.43 , pp. 1059-1065
    • Yaffe, E.1    Tanay, A.2
  • 36
    • 79955407832 scopus 로고    scopus 로고
    • Real-time observation of transcription initiation and elongation on an endogenous yeast gene
    • Larson D.R., Zenklusen D., Wu B., Chao J.A., Singer R.H. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science 2011, 332:475-478.
    • (2011) Science , vol.332 , pp. 475-478
    • Larson, D.R.1    Zenklusen, D.2    Wu, B.3    Chao, J.A.4    Singer, R.H.5
  • 38
    • 77955174763 scopus 로고    scopus 로고
    • Single-allele analysis of transcription kinetics in living mammalian cells
    • Yunger S., Rosenfeld L., Garini Y., Shav-Tal Y. Single-allele analysis of transcription kinetics in living mammalian cells. Nat Methods 2010, 7:631-633.
    • (2010) Nat Methods , vol.7 , pp. 631-633
    • Yunger, S.1    Rosenfeld, L.2    Garini, Y.3    Shav-Tal, Y.4
  • 39
    • 78649902376 scopus 로고    scopus 로고
    • The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture
    • Dorier J., Stasiak A. The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture. Nucleic Acids Res 2010, 38:7410-7421.
    • (2010) Nucleic Acids Res , vol.38 , pp. 7410-7421
    • Dorier, J.1    Stasiak, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.