-
1
-
-
17644427718
-
Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
-
Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP, (2005) Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data. Science 308: 523-529.
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
2
-
-
67349146589
-
mRNA-Seq whole-transcriptome analysis of a single cell
-
Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, et al. (2009) mRNA-Seq whole-transcriptome analysis of a single cell. Nature Methods 6: 377-384.
-
(2009)
Nature Methods
, vol.6
, pp. 377-384
-
-
Tang, F.1
Barbacioru, C.2
Wang, Y.3
Nordman, E.4
Lee, C.5
-
3
-
-
79955750055
-
Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
-
Bendall SC, Simonds EF, Qiu P, Amir ED, Krutzik PO, et al. (2011) Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum. Science 332: 687-696.
-
(2011)
Science
, vol.332
, pp. 687-696
-
-
Bendall, S.C.1
Simonds, E.F.2
Qiu, P.3
Amir, E.D.4
Krutzik, P.O.5
-
4
-
-
79955780615
-
Flow Cytometry, Amped Up
-
Benoist C, Hacohen N, (2011) Flow Cytometry, Amped Up. Science 332: 677-678.
-
(2011)
Science
, vol.332
, pp. 677-678
-
-
Benoist, C.1
Hacohen, N.2
-
5
-
-
84874418509
-
Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution
-
Sen A, Rothenberg ME, Mukherjee G, Feng N, Kalisky T, et al. (2012) Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution. Proc Natl Acad Sci USA 109: 20667-20672.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 20667-20672
-
-
Sen, A.1
Rothenberg, M.E.2
Mukherjee, G.3
Feng, N.4
Kalisky, T.5
-
6
-
-
84869095801
-
Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity
-
MacArthur BD, Sevilla A, Lenz M, Müller F-J, Schuldt BM, et al. (2012) Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity. Nature Cell Biol 14: 1139-1147.
-
(2012)
Nature Cell Biol
, vol.14
, pp. 1139-1147
-
-
MacArthur, B.D.1
Sevilla, A.2
Lenz, M.3
Müller, F.-J.4
Schuldt, B.M.5
-
7
-
-
79960629184
-
Label-free bond-selective imaging by listening to vibrationally excited molecules
-
Wang H-W, Chai N, Wang P, Hu S, Dou W, et al. (2011) Label-free bond-selective imaging by listening to vibrationally excited molecules. Phys Rev Lett 106: 238106.
-
(2011)
Phys Rev Lett
, vol.106
, pp. 238106
-
-
Wang, H.-W.1
Chai, N.2
Wang, P.3
Hu, S.4
Dou, W.5
-
8
-
-
84860916215
-
LTB4 is a signal-relay molecule during neutrophil chemotaxis
-
Afonso PV, Janka-Junttila M, Lee YJ, McCann CP, Oliver CM, et al. (2012) LTB4 is a signal-relay molecule during neutrophil chemotaxis. Dev Cell 22: 1079-1091.
-
(2012)
Dev Cell
, vol.22
, pp. 1079-1091
-
-
Afonso, P.V.1
Janka-Junttila, M.2
Lee, Y.J.3
McCann, C.P.4
Oliver, C.M.5
-
9
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S, (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
10
-
-
77952474987
-
Cellular Heterogeneity: Do differences make a difference
-
Altschuler SJ, Wu LF, (2010) Cellular Heterogeneity: Do differences make a difference? Cell 141: 559-563.
-
(2010)
Cell
, vol.141
, pp. 559-563
-
-
Altschuler, S.J.1
Wu, L.F.2
-
11
-
-
33845286555
-
Human laminopathies: nuclei gone genetically awry
-
Capell BC, Collins FS, (2006) Human laminopathies: nuclei gone genetically awry. Nat Rev Genet 7: 940-952.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 940-952
-
-
Capell, B.C.1
Collins, F.S.2
-
13
-
-
0034682504
-
Dynamic modeling of gene expression data
-
Holter NS, Mitra M, Maritan A, Cieplak M, Banavar JR, et al. (2000) Dynamic modeling of gene expression data. Proc Natl Acad Sci USA 97: 8409-8414.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 8409-8414
-
-
Holter, N.S.1
Mitra, M.2
Maritan, A.3
Cieplak, M.4
Banavar, J.R.5
-
14
-
-
76249131225
-
Cytoskeleton-based forecasting of stem cell lineage fates
-
Treiser MD, Yang EH, Gordonov S, Cohen DM, Androulakis IP, et al. (2010) Cytoskeleton-based forecasting of stem cell lineage fates. Proc Natl Acad Sci USA 107: 610-615.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 610-615
-
-
Treiser, M.D.1
Yang, E.H.2
Gordonov, S.3
Cohen, D.M.4
Androulakis, I.P.5
-
15
-
-
84863446004
-
Automated image analysis of nuclear shape: What can we learn from a prematurely aged cell
-
Driscoll MK, Albanese JL, Xiong Z-M, Mailman M, Losert W, et al. (2012) Automated image analysis of nuclear shape: What can we learn from a prematurely aged cell? Aging 4 (2): 119-132.
-
(2012)
Aging
, vol.4
, Issue.2
, pp. 119-132
-
-
Driscoll, M.K.1
Albanese, J.L.2
Xiong, Z.-M.3
Mailman, M.4
Losert, W.5
-
16
-
-
65949097067
-
flowCore: a Bioconductor package for high throughput flow cytometry
-
Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, et al. (2009) flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics 10: 106.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 106
-
-
Hahne, F.1
LeMeur, N.2
Brinkman, R.R.3
Ellis, B.4
Haaland, P.5
-
17
-
-
78049372728
-
Swift: scalable weighted iterative sampling for flow cytometry clustering
-
Naim I, Sharma G, Datta S, Cavenaugh JS, Wang J-C, et al. (2010) Swift: scalable weighted iterative sampling for flow cytometry clustering. IEEE Acoustics Speech and Signal Processing pp. 509-512.
-
(2010)
IEEE Acoustics Speech and Signal Processing
, pp. 509-512
-
-
Naim, I.1
Sharma, G.2
Datta, S.3
Cavenaugh, J.S.4
Wang, J.-C.5
-
18
-
-
77956565464
-
Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data
-
Qian Y, Wei C, Lee FE-H, Campbell J, Halliley J, et al. (2010) Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data. Cytometry B Clin Cytom 78 (suppl. 1): S69-S82.
-
(2010)
Cytometry B Clin Cytom
, vol.78
, Issue.SUPPL. 1
-
-
Qian, Y.1
Wei, C.2
Lee, F.E.-H.3
Campbell, J.4
Halliley, J.5
-
19
-
-
84869866192
-
RchyOptimyx: Cellular Hierarchy optimization for flow cytometry
-
Aghaeepour N, Jalali A, O'Neill K, Chattopadhyay PK, Roederer M, et al. (2012) RchyOptimyx: Cellular Hierarchy optimization for flow cytometry. Cytometry Part A 81A: 1022-1030.
-
(2012)
Cytometry Part A
, vol.81 A
, pp. 1022-1030
-
-
Aghaeepour, N.1
Jalali, A.2
O'Neill, K.3
Chattopadhyay, P.K.4
Roederer, M.5
-
20
-
-
84861477707
-
Inferring phenotypic properties from single-cell characteristics
-
Qiu P, (2012) Inferring phenotypic properties from single-cell characteristics. PLoS ONE 7 (5): e37038.
-
(2012)
PLoS ONE
, vol.7
, Issue.5
-
-
Qiu, P.1
-
21
-
-
84865139571
-
flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding
-
Ge Y, Sealfon SC, (2012) flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding. Bioinformatics 28: 2052-2058.
-
(2012)
Bioinformatics
, vol.28
, pp. 2052-2058
-
-
Ge, Y.1
Sealfon, S.C.2
-
22
-
-
84859246989
-
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
-
Aghaeepour N, Chattopadhyay PK, Ganesan A, O'Neill K, Zare H, et al. (2012) Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays. Bioinformatics 28: 1009-1016.
-
(2012)
Bioinformatics
, vol.28
, pp. 1009-1016
-
-
Aghaeepour, N.1
Chattopadhyay, P.K.2
Ganesan, A.3
O'Neill, K.4
Zare, H.5
-
23
-
-
84855257738
-
Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma
-
Zare H, Bashashati A, Kridel R, Aghaeepour N, Haffari G, et al. (2012) Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma. Am J Clin Pathol 137: 75-85.
-
(2012)
Am J Clin Pathol
, vol.137
, pp. 75-85
-
-
Zare, H.1
Bashashati, A.2
Kridel, R.3
Aghaeepour, N.4
Haffari, G.5
-
24
-
-
84874666550
-
Critical assessment of automated flow cytometry data analysis techniques
-
Hoos H, et al. (2013), The FlowCAP Consortium
-
Aghaeepour N, Finak G, (2013) The FlowCAP Consortium The DREAM Consortium (2013) Hoos H, et al. (2013) Critical assessment of automated flow cytometry data analysis techniques. Nature Methods 10 (3): 228-238.
-
(2013)
Nature Methods
, vol.10
, Issue.3
, pp. 228-238
-
-
Aghaeepour, N.1
Finak, G.2
-
27
-
-
38049046550
-
Central and local limit theorems for RNA structures
-
Jin EY, Reidys CM, (2008) Central and local limit theorems for RNA structures. J Theor Biol 250 (3): 547-559.
-
(2008)
J Theor Biol
, vol.250
, Issue.3
, pp. 547-559
-
-
Jin, E.Y.1
Reidys, C.M.2
-
30
-
-
24644520772
-
Inhibiting farnesylation of progerin prevents the characteristic nuclear blebbing of Hutchinson-Gilford progeria syndrome
-
Capell BC, Erdos MR, Madigan JP, Fiordalisi JJ, Varga R, et al. (2005) Inhibiting farnesylation of progerin prevents the characteristic nuclear blebbing of Hutchinson-Gilford progeria syndrome. Proc Natl Acad Sci USA 102 (36): 12879-84.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.36
, pp. 12879-12884
-
-
Capell, B.C.1
Erdos, M.R.2
Madigan, J.P.3
Fiordalisi, J.J.4
Varga, R.5
-
31
-
-
34247356070
-
A lamin A protein isoform overexpressed in Hutchinson-Gilford progeria syndrome interferes with mitosis in progeria and normal cells
-
Cao K, Capell BC, Erdos MR, Djabali K, Collins FS, (2007) A lamin A protein isoform overexpressed in Hutchinson-Gilford progeria syndrome interferes with mitosis in progeria and normal cells. Proc Natl Acad Sci USA 104 (12): 4949-54.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.12
, pp. 4949-4954
-
-
Cao, K.1
Capell, B.C.2
Erdos, M.R.3
Djabali, K.4
Collins, F.S.5
-
32
-
-
79959776029
-
Rapamycin reverses cellular phenotypes and enhances mutant protein clearance in Hutchinson-Gilford progeria syndrome cells
-
Cao K, Graziotto JJ, Blair CD, Mazzulli JR, Erdos MR, et al. (2011) Rapamycin reverses cellular phenotypes and enhances mutant protein clearance in Hutchinson-Gilford progeria syndrome cells. Sci Transl Med 3 (89): 89ra58.
-
(2011)
Sci Transl Med
, vol.3
, Issue.89
-
-
Cao, K.1
Graziotto, J.J.2
Blair, C.D.3
Mazzulli, J.R.4
Erdos, M.R.5
-
33
-
-
82955227518
-
MCAM-expressing CD4+ T cells in Peripheral Blood Secrete IL-17A and are Significantly Elevated in Inflammatory Autoimmune Diseases
-
Dagur PK, Biancotto A, Wei L, Sen HN, Yao M, et al. (2011) MCAM-expressing CD4+ T cells in Peripheral Blood Secrete IL-17A and are Significantly Elevated in Inflammatory Autoimmune Diseases. J Autoimmun 37 (4): 319-327.
-
(2011)
J Autoimmun
, vol.37
, Issue.4
, pp. 319-327
-
-
Dagur, P.K.1
Biancotto, A.2
Wei, L.3
Sen, H.N.4
Yao, M.5
-
35
-
-
67449113503
-
CD27 expression on CD4+ T cells differentiates effector from regulatory T cell subsets in the lung
-
Mack DG, Lanham AM, Palmer BE, Maier LA, Fontenot AP, (2009) CD27 expression on CD4+ T cells differentiates effector from regulatory T cell subsets in the lung. J Immunol 182 (11): 7317-24.
-
(2009)
J Immunol
, vol.182
, Issue.11
, pp. 7317-7324
-
-
Mack, D.G.1
Lanham, A.M.2
Palmer, B.E.3
Maier, L.A.4
Fontenot, A.P.5
-
36
-
-
84878013708
-
Th22, but not Th17 Might be a Good Index to Predict the Tissue Involvement of Systemic Lupus Erythematosus
-
Yang XY, Wang HY, Zhao XY, Wang LJ, Lv QH, et al. (2013) Th22, but not Th17 Might be a Good Index to Predict the Tissue Involvement of Systemic Lupus Erythematosus. J Clin Immunol 33 (4): 767-74.
-
(2013)
J Clin Immunol
, vol.33
, Issue.4
, pp. 767-774
-
-
Yang, X.Y.1
Wang, H.Y.2
Zhao, X.Y.3
Wang, L.J.4
Lv, Q.H.5
-
37
-
-
84867578049
-
Circulating CD4+ CD25brightFOXP3+ regulatory T-cells are significantly reduced in bullous pemphigoid patients
-
Quaglino P, Antiga E, Comessatti A, Caproni M, Nardò T, et al. (2012) Circulating CD4+ CD25brightFOXP3+ regulatory T-cells are significantly reduced in bullous pemphigoid patients. Arch Dermatol Res 304 (8): 639-645.
-
(2012)
Arch Dermatol Res
, vol.304
, Issue.8
, pp. 639-645
-
-
Quaglino, P.1
Antiga, E.2
Comessatti, A.3
Caproni, M.4
Nardò, T.5
-
38
-
-
82455201061
-
Central nervous system recruitment of effector memory CD8+ T lymphocytes during neuroinflammation is dependent on α4 integrin
-
Ifergan I, Kebir H, Alvarez JI, Marceau G, Bernard M, et al. (2011) Central nervous system recruitment of effector memory CD8+ T lymphocytes during neuroinflammation is dependent on α4 integrin. Brain 134 (Pt 12): 3560-3577.
-
(2011)
Brain
, vol.134
, Issue.PART 12
, pp. 3560-3577
-
-
Ifergan, I.1
Kebir, H.2
Alvarez, J.I.3
Marceau, G.4
Bernard, M.5
|