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Volumn 9, Issue 9, 2013, Pages

From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells

Author keywords

[No Author keywords available]

Indexed keywords

CYTOLOGY; DIAGNOSIS; DISEASES; GENE EXPRESSION; LEARNING SYSTEMS; TUMORS;

EID: 84884697284     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003215     Document Type: Article
Times cited : (29)

References (38)
  • 1
    • 17644427718 scopus 로고    scopus 로고
    • Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
    • Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP, (2005) Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data. Science 308: 523-529.
    • (2005) Science , vol.308 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 3
    • 79955750055 scopus 로고    scopus 로고
    • Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
    • Bendall SC, Simonds EF, Qiu P, Amir ED, Krutzik PO, et al. (2011) Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum. Science 332: 687-696.
    • (2011) Science , vol.332 , pp. 687-696
    • Bendall, S.C.1    Simonds, E.F.2    Qiu, P.3    Amir, E.D.4    Krutzik, P.O.5
  • 4
    • 79955780615 scopus 로고    scopus 로고
    • Flow Cytometry, Amped Up
    • Benoist C, Hacohen N, (2011) Flow Cytometry, Amped Up. Science 332: 677-678.
    • (2011) Science , vol.332 , pp. 677-678
    • Benoist, C.1    Hacohen, N.2
  • 5
    • 84874418509 scopus 로고    scopus 로고
    • Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution
    • Sen A, Rothenberg ME, Mukherjee G, Feng N, Kalisky T, et al. (2012) Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution. Proc Natl Acad Sci USA 109: 20667-20672.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 20667-20672
    • Sen, A.1    Rothenberg, M.E.2    Mukherjee, G.3    Feng, N.4    Kalisky, T.5
  • 6
    • 84869095801 scopus 로고    scopus 로고
    • Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity
    • MacArthur BD, Sevilla A, Lenz M, Müller F-J, Schuldt BM, et al. (2012) Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity. Nature Cell Biol 14: 1139-1147.
    • (2012) Nature Cell Biol , vol.14 , pp. 1139-1147
    • MacArthur, B.D.1    Sevilla, A.2    Lenz, M.3    Müller, F.-J.4    Schuldt, B.M.5
  • 7
    • 79960629184 scopus 로고    scopus 로고
    • Label-free bond-selective imaging by listening to vibrationally excited molecules
    • Wang H-W, Chai N, Wang P, Hu S, Dou W, et al. (2011) Label-free bond-selective imaging by listening to vibrationally excited molecules. Phys Rev Lett 106: 238106.
    • (2011) Phys Rev Lett , vol.106 , pp. 238106
    • Wang, H.-W.1    Chai, N.2    Wang, P.3    Hu, S.4    Dou, W.5
  • 9
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S, (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-547.
    • (2008) Nature , vol.453 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 10
    • 77952474987 scopus 로고    scopus 로고
    • Cellular Heterogeneity: Do differences make a difference
    • Altschuler SJ, Wu LF, (2010) Cellular Heterogeneity: Do differences make a difference? Cell 141: 559-563.
    • (2010) Cell , vol.141 , pp. 559-563
    • Altschuler, S.J.1    Wu, L.F.2
  • 11
    • 33845286555 scopus 로고    scopus 로고
    • Human laminopathies: nuclei gone genetically awry
    • Capell BC, Collins FS, (2006) Human laminopathies: nuclei gone genetically awry. Nat Rev Genet 7: 940-952.
    • (2006) Nat Rev Genet , vol.7 , pp. 940-952
    • Capell, B.C.1    Collins, F.S.2
  • 15
    • 84863446004 scopus 로고    scopus 로고
    • Automated image analysis of nuclear shape: What can we learn from a prematurely aged cell
    • Driscoll MK, Albanese JL, Xiong Z-M, Mailman M, Losert W, et al. (2012) Automated image analysis of nuclear shape: What can we learn from a prematurely aged cell? Aging 4 (2): 119-132.
    • (2012) Aging , vol.4 , Issue.2 , pp. 119-132
    • Driscoll, M.K.1    Albanese, J.L.2    Xiong, Z.-M.3    Mailman, M.4    Losert, W.5
  • 18
    • 77956565464 scopus 로고    scopus 로고
    • Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data
    • Qian Y, Wei C, Lee FE-H, Campbell J, Halliley J, et al. (2010) Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data. Cytometry B Clin Cytom 78 (suppl. 1): S69-S82.
    • (2010) Cytometry B Clin Cytom , vol.78 , Issue.SUPPL. 1
    • Qian, Y.1    Wei, C.2    Lee, F.E.-H.3    Campbell, J.4    Halliley, J.5
  • 20
    • 84861477707 scopus 로고    scopus 로고
    • Inferring phenotypic properties from single-cell characteristics
    • Qiu P, (2012) Inferring phenotypic properties from single-cell characteristics. PLoS ONE 7 (5): e37038.
    • (2012) PLoS ONE , vol.7 , Issue.5
    • Qiu, P.1
  • 21
    • 84865139571 scopus 로고    scopus 로고
    • flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding
    • Ge Y, Sealfon SC, (2012) flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding. Bioinformatics 28: 2052-2058.
    • (2012) Bioinformatics , vol.28 , pp. 2052-2058
    • Ge, Y.1    Sealfon, S.C.2
  • 22
    • 84859246989 scopus 로고    scopus 로고
    • Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
    • Aghaeepour N, Chattopadhyay PK, Ganesan A, O'Neill K, Zare H, et al. (2012) Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays. Bioinformatics 28: 1009-1016.
    • (2012) Bioinformatics , vol.28 , pp. 1009-1016
    • Aghaeepour, N.1    Chattopadhyay, P.K.2    Ganesan, A.3    O'Neill, K.4    Zare, H.5
  • 23
    • 84855257738 scopus 로고    scopus 로고
    • Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma
    • Zare H, Bashashati A, Kridel R, Aghaeepour N, Haffari G, et al. (2012) Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma. Am J Clin Pathol 137: 75-85.
    • (2012) Am J Clin Pathol , vol.137 , pp. 75-85
    • Zare, H.1    Bashashati, A.2    Kridel, R.3    Aghaeepour, N.4    Haffari, G.5
  • 24
    • 84874666550 scopus 로고    scopus 로고
    • Critical assessment of automated flow cytometry data analysis techniques
    • Hoos H, et al. (2013), The FlowCAP Consortium
    • Aghaeepour N, Finak G, (2013) The FlowCAP Consortium The DREAM Consortium (2013) Hoos H, et al. (2013) Critical assessment of automated flow cytometry data analysis techniques. Nature Methods 10 (3): 228-238.
    • (2013) Nature Methods , vol.10 , Issue.3 , pp. 228-238
    • Aghaeepour, N.1    Finak, G.2
  • 27
    • 38049046550 scopus 로고    scopus 로고
    • Central and local limit theorems for RNA structures
    • Jin EY, Reidys CM, (2008) Central and local limit theorems for RNA structures. J Theor Biol 250 (3): 547-559.
    • (2008) J Theor Biol , vol.250 , Issue.3 , pp. 547-559
    • Jin, E.Y.1    Reidys, C.M.2
  • 30
    • 24644520772 scopus 로고    scopus 로고
    • Inhibiting farnesylation of progerin prevents the characteristic nuclear blebbing of Hutchinson-Gilford progeria syndrome
    • Capell BC, Erdos MR, Madigan JP, Fiordalisi JJ, Varga R, et al. (2005) Inhibiting farnesylation of progerin prevents the characteristic nuclear blebbing of Hutchinson-Gilford progeria syndrome. Proc Natl Acad Sci USA 102 (36): 12879-84.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.36 , pp. 12879-12884
    • Capell, B.C.1    Erdos, M.R.2    Madigan, J.P.3    Fiordalisi, J.J.4    Varga, R.5
  • 31
    • 34247356070 scopus 로고    scopus 로고
    • A lamin A protein isoform overexpressed in Hutchinson-Gilford progeria syndrome interferes with mitosis in progeria and normal cells
    • Cao K, Capell BC, Erdos MR, Djabali K, Collins FS, (2007) A lamin A protein isoform overexpressed in Hutchinson-Gilford progeria syndrome interferes with mitosis in progeria and normal cells. Proc Natl Acad Sci USA 104 (12): 4949-54.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.12 , pp. 4949-4954
    • Cao, K.1    Capell, B.C.2    Erdos, M.R.3    Djabali, K.4    Collins, F.S.5
  • 32
    • 79959776029 scopus 로고    scopus 로고
    • Rapamycin reverses cellular phenotypes and enhances mutant protein clearance in Hutchinson-Gilford progeria syndrome cells
    • Cao K, Graziotto JJ, Blair CD, Mazzulli JR, Erdos MR, et al. (2011) Rapamycin reverses cellular phenotypes and enhances mutant protein clearance in Hutchinson-Gilford progeria syndrome cells. Sci Transl Med 3 (89): 89ra58.
    • (2011) Sci Transl Med , vol.3 , Issue.89
    • Cao, K.1    Graziotto, J.J.2    Blair, C.D.3    Mazzulli, J.R.4    Erdos, M.R.5
  • 33
    • 82955227518 scopus 로고    scopus 로고
    • MCAM-expressing CD4+ T cells in Peripheral Blood Secrete IL-17A and are Significantly Elevated in Inflammatory Autoimmune Diseases
    • Dagur PK, Biancotto A, Wei L, Sen HN, Yao M, et al. (2011) MCAM-expressing CD4+ T cells in Peripheral Blood Secrete IL-17A and are Significantly Elevated in Inflammatory Autoimmune Diseases. J Autoimmun 37 (4): 319-327.
    • (2011) J Autoimmun , vol.37 , Issue.4 , pp. 319-327
    • Dagur, P.K.1    Biancotto, A.2    Wei, L.3    Sen, H.N.4    Yao, M.5
  • 35
    • 67449113503 scopus 로고    scopus 로고
    • CD27 expression on CD4+ T cells differentiates effector from regulatory T cell subsets in the lung
    • Mack DG, Lanham AM, Palmer BE, Maier LA, Fontenot AP, (2009) CD27 expression on CD4+ T cells differentiates effector from regulatory T cell subsets in the lung. J Immunol 182 (11): 7317-24.
    • (2009) J Immunol , vol.182 , Issue.11 , pp. 7317-7324
    • Mack, D.G.1    Lanham, A.M.2    Palmer, B.E.3    Maier, L.A.4    Fontenot, A.P.5
  • 36
    • 84878013708 scopus 로고    scopus 로고
    • Th22, but not Th17 Might be a Good Index to Predict the Tissue Involvement of Systemic Lupus Erythematosus
    • Yang XY, Wang HY, Zhao XY, Wang LJ, Lv QH, et al. (2013) Th22, but not Th17 Might be a Good Index to Predict the Tissue Involvement of Systemic Lupus Erythematosus. J Clin Immunol 33 (4): 767-74.
    • (2013) J Clin Immunol , vol.33 , Issue.4 , pp. 767-774
    • Yang, X.Y.1    Wang, H.Y.2    Zhao, X.Y.3    Wang, L.J.4    Lv, Q.H.5
  • 37
    • 84867578049 scopus 로고    scopus 로고
    • Circulating CD4+ CD25brightFOXP3+ regulatory T-cells are significantly reduced in bullous pemphigoid patients
    • Quaglino P, Antiga E, Comessatti A, Caproni M, Nardò T, et al. (2012) Circulating CD4+ CD25brightFOXP3+ regulatory T-cells are significantly reduced in bullous pemphigoid patients. Arch Dermatol Res 304 (8): 639-645.
    • (2012) Arch Dermatol Res , vol.304 , Issue.8 , pp. 639-645
    • Quaglino, P.1    Antiga, E.2    Comessatti, A.3    Caproni, M.4    Nardò, T.5
  • 38
    • 82455201061 scopus 로고    scopus 로고
    • Central nervous system recruitment of effector memory CD8+ T lymphocytes during neuroinflammation is dependent on α4 integrin
    • Ifergan I, Kebir H, Alvarez JI, Marceau G, Bernard M, et al. (2011) Central nervous system recruitment of effector memory CD8+ T lymphocytes during neuroinflammation is dependent on α4 integrin. Brain 134 (Pt 12): 3560-3577.
    • (2011) Brain , vol.134 , Issue.PART 12 , pp. 3560-3577
    • Ifergan, I.1    Kebir, H.2    Alvarez, J.I.3    Marceau, G.4    Bernard, M.5


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