-
1
-
-
0342264747
-
Late events of translation initiation in bacteria: A kinetic analysis
-
Tomsic J, et al. (2000) Late events of translation initiation in bacteria: A kinetic analysis. EMBO J 19(9):2127-2136.
-
(2000)
EMBO J
, vol.19
, Issue.9
, pp. 2127-2136
-
-
Tomsic, J.1
-
2
-
-
34748843156
-
A quantitative kinetic scheme for 70 S translation initiation complex formation
-
Grigoriadou C, Marzi S, Kirillov S, Gualerzi CO, Cooperman BS (2007) A quantitative kinetic scheme for 70 S translation initiation complex formation. J Mol Biol 373(3): 562-572.
-
(2007)
J Mol Biol
, vol.373
, Issue.3
, pp. 562-572
-
-
Grigoriadou, C.1
Marzi, S.2
Kirillov, S.3
Gualerzi, C.O.4
Cooperman, B.S.5
-
3
-
-
52149112910
-
Structure of the 30S translation initiation complex
-
Simonetti A, et al. (2008) Structure of the 30S translation initiation complex. Nature 455(7211):416-420.
-
(2008)
Nature
, vol.455
, Issue.7211
, pp. 416-420
-
-
Simonetti, A.1
-
4
-
-
59349113762
-
A structural view of translation initiation in bacteria
-
Simonetti A, et al. (2009) A structural view of translation initiation in bacteria. Cell Mol Life Sci 66(3):423-436.
-
(2009)
Cell Mol Life Sci
, vol.66
, Issue.3
, pp. 423-436
-
-
Simonetti, A.1
-
5
-
-
66549108297
-
Structure-function insights into prokaryotic and eukaryotic translation initiation
-
Myasnikov AG, Simonetti A, Marzi S, Klaholz BP (2009) Structure-function insights into prokaryotic and eukaryotic translation initiation. Curr Opin Struct Biol 19(3): 300-309.
-
(2009)
Curr Opin Struct Biol
, vol.19
, Issue.3
, pp. 300-309
-
-
Myasnikov, A.G.1
Simonetti, A.2
Marzi, S.3
Klaholz, B.P.4
-
6
-
-
77950371305
-
The ribosome-bound initiation factor 2 recruits initiator tRNA to the 30S initiation complex
-
Milon P, et al. (2010) The ribosome-bound initiation factor 2 recruits initiator tRNA to the 30S initiation complex. EMBO Rep 11(4):312-316.
-
(2010)
EMBO Rep
, vol.11
, Issue.4
, pp. 312-316
-
-
Milon, P.1
-
7
-
-
67649646602
-
GTP hydrolysis by IF2 guides progression of the ribosome into elongation
-
Marshall RA, Aitken CE, Puglisi JD (2009) GTP hydrolysis by IF2 guides progression of the ribosome into elongation. Mol Cell 35(1):37-47.
-
(2009)
Mol Cell
, vol.35
, Issue.1
, pp. 37-47
-
-
Marshall, R.A.1
Aitken, C.E.2
Puglisi, J.D.3
-
8
-
-
28544446738
-
Conformational transition of initiation factor 2 from the GTP-to GDP-bound state visualized on the ribosome
-
Myasnikov AG, et al. (2005) Conformational transition of initiation factor 2 from the GTP-to GDP-bound state visualized on the ribosome. Nat Struct Mol Biol 12(12): 1145-1149.
-
(2005)
Nat Struct Mol Biol
, vol.12
, Issue.12
, pp. 1145-1149
-
-
Myasnikov, A.G.1
-
9
-
-
20444365142
-
The cryo-EM structure of a translation initiation complex from Escherichia coli
-
Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J (2005) The cryo-EM structure of a translation initiation complex from Escherichia coli. Cell 121(5):703-712.
-
(2005)
Cell
, vol.121
, Issue.5
, pp. 703-712
-
-
Allen, G.S.1
Zavialov, A.2
Gursky, R.3
Ehrenberg, M.4
Frank, J.5
-
10
-
-
79960917084
-
The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli
-
Julián P, et al. (2011) The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli. PLoS Biol 9(7):e1001095.
-
(2011)
PLoS Biol
, vol.9
, Issue.7
-
-
Julián, P.1
-
11
-
-
84878313058
-
Structure of the protein core of translation initiation factor.in apo, GTP-bound and GDP-bound forms
-
Simonetti A, et al.(2013) Structure of the protein core of translation initiation factor in apo, GTP-bound and GDP-bound forms. Acta Crystallogr D Biol Crystallogr 69(Pt 6):925-933.
-
(2013)
Acta Crystallogr D Biol Crystallogr
, vol.69
, Issue.PART 6
, pp. 925-933
-
-
Simonetti, A.1
-
12
-
-
84884645185
-
Initiation factor 2 crystal structure reveals a different domain organization from eukaryotic initiation factor 5B and mechanism among translational GTPases
-
Eiler D, Lin J, Simonetti A, Klaholz BP, Steitz TA (2013) Initiation factor 2 crystal structure reveals a different domain organization from eukaryotic initiation factor 5B and mechanism among translational GTPases. Proc Natl Acad Sci USA 110:15662-15667.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 15662-15667
-
-
Eiler, D.1
Lin, J.2
Simonetti, A.3
Klaholz, B.P.4
Steitz, T.A.5
-
13
-
-
0038182530
-
A conserved structural motif at the N terminus of bacterial translation initiation factor IF2
-
Laursen BS, Mortensen KK, Sperling-Petersen HU, Hoffman DW (2003) A conserved structural motif at the N terminus of bacterial translation initiation factor IF2. J Biol Chem 278(18):16320-16328.
-
(2003)
J Biol Chem
, vol.278
, Issue.18
, pp. 16320-16328
-
-
Laursen, B.S.1
Mortensen, K.K.2
Sperling-Petersen, H.U.3
Hoffman, D.W.4
-
14
-
-
10244226778
-
Testing the conservation of the translational machinery over evolution in diverse environments: Assaying Thermus thermophilus ribosomes and initiation factors in a coupled transcription-translation system from Escherichia coli
-
Thompson J, Dahlberg AE (2004) Testing the conservation of the translational machinery over evolution in diverse environments: Assaying Thermus thermophilus ribosomes and initiation factors in a coupled transcription- translation system from Escherichia coli. Nucleic Acids Res 32(19):5954-5961.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.19
, pp. 5954-5961
-
-
Thompson, J.1
Dahlberg, A.E.2
-
15
-
-
0345169163
-
Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution
-
Koch MH, Vachette P, Svergun DI (2003) Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution. Q Rev Biophys 36(2):147-227.
-
(2003)
Q Rev Biophys
, vol.36
, Issue.2
, pp. 147-227
-
-
Koch, M.H.1
Vachette, P.2
Svergun, D.I.3
-
16
-
-
70349316826
-
Combined sampler robot and high-performance liquid chromatography: A fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamline
-
David G, Perez J (2009) Combined sampler robot and high-performance liquid chromatography: A fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamline. J Appl Cryst 42:892-900.
-
(2009)
J Appl Cryst
, vol.42
, pp. 892-900
-
-
David, G.1
Perez, J.2
-
17
-
-
62649139615
-
DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
-
Franke D, Svergun D (2009) DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering. J Appl Cryst 42:342-346.
-
(2009)
J Appl Cryst
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.2
-
18
-
-
82055161782
-
DADIMODO: A program for refining the structure of multidomain proteins and complexes against small-angle scattering data and NMR-derived restraints
-
Evrard G, Mareuil F, Bontemps F, Sizun C, Perez J (2011) DADIMODO: A program for refining the structure of multidomain proteins and complexes against small-angle scattering data and NMR-derived restraints. J Appl Cryst 44:1264-1271.
-
(2011)
J Appl Cryst
, vol.44
, pp. 1264-1271
-
-
Evrard, G.1
Mareuil, F.2
Bontemps, F.3
Sizun, C.4
Perez, J.5
-
19
-
-
0034678924
-
Structure of the fMet-tRNA(fMet)-binding domain of B. Stearothermophilus initiation factor IF2
-
Meunier S, et al. (2000) Structure of the fMet-tRNA(fMet)-binding domain of B. stearothermophilus initiation factor IF2. EMBO J 19(8):1918-1926.
-
(2000)
EMBO J
, vol.19
, Issue.8
, pp. 1918-1926
-
-
Meunier, S.1
-
20
-
-
0034703718
-
X-Ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding
-
Roll-Mecak A, Cao C, Dever TE, Burley SK (2000) X-Ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding. Cell 103(5):781-792.
-
(2000)
Cell
, vol.103
, Issue.5
, pp. 781-792
-
-
Roll-Mecak, A.1
Cao, C.2
Dever, T.E.3
Burley, S.K.4
-
21
-
-
84859508471
-
Structural dynamics of bacterial translation initiation factor IF2
-
Wienk H, et al. (2012) Structural dynamics of bacterial translation initiation factor IF2. J Biol Chem 287(14):10922-10932.
-
(2012)
J Biol Chem
, vol.287
, Issue.14
, pp. 10922-10932
-
-
Wienk, H.1
-
22
-
-
0346493093
-
The translation initiation functions of IF2: Targets for thiostrepton inhibition
-
Brandi L, et al. (2004) The translation initiation functions of IF2: Targets for thiostrepton inhibition. J Mol Biol 335(4):881-894.
-
(2004)
J Mol Biol
, vol.335
, Issue.4
, pp. 881-894
-
-
Brandi, L.1
-
23
-
-
84879136335
-
Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes
-
Davydov II, et al. (2013) Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes. Nat Commun 4:1387.
-
(2013)
Nat Commun
, vol.4
, pp. 1387
-
-
Davydov, I.I.1
-
24
-
-
21244465843
-
Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation
-
Diaconu M, et al. (2005) Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation. Cell 121(7):991-1004.
-
(2005)
Cell
, vol.121
, Issue.7
, pp. 991-1004
-
-
Diaconu, M.1
-
25
-
-
70350602056
-
The structure of the ribosome with elongation factor G trapped in the posttranslocational state
-
Gao YG, et al. (2009) The structure of the ribosome with elongation factor G trapped in the posttranslocational state. Science 326(5953):694-699.
-
(2009)
Science
, vol.326
, Issue.5953
, pp. 694-699
-
-
Gao, Y.G.1
-
26
-
-
0015720610
-
Dependence of initiation factor IF-2 activity on proteins L7 and L12 from Escherichia coli 50 S ribosomes
-
Fakunding JL, Traut RR, Hershey JW (1973) Dependence of initiation factor IF-2 activity on proteins L7 and L12 from Escherichia coli 50 S ribosomes. J Biol Chem 248(24): 8555-8559.
-
(1973)
J Biol Chem
, vol.248
, Issue.24
, pp. 8555-8559
-
-
Fakunding, J.L.1
Traut, R.R.2
Hershey, J.W.3
-
27
-
-
0017035617
-
Cross-linking of initiation factor IF2 to proteins L7/L12 in 70 S ribosomes of Escherichia coli
-
Heimark RL, Hershey JW, Traut RR (1976) Cross-linking of initiation factor IF2 to proteins L7/L12 in 70 S ribosomes of Escherichia coli. J Biol Chem 251(24):7779-7784.
-
(1976)
J Biol Chem
, vol.251
, Issue.24
, pp. 7779-7784
-
-
Heimark, R.L.1
Hershey, J.W.2
Traut, R.R.3
-
28
-
-
33751532962
-
The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain
-
Helgstrand M, et al. (2007) The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain. J Mol Biol 365(2): 468-479.
-
(2007)
J Mol Biol
, vol.365
, Issue.2
, pp. 468-479
-
-
Helgstrand, M.1
-
29
-
-
77953082717
-
The ribosomal stalk plays a key role in IF2-mediated association of the ribosomal subunits
-
Huang C, Mandava CS, Sanyal S (2010) The ribosomal stalk plays a key role in IF2-mediated association of the ribosomal subunits. J Mol Biol 399(1):145-153.
-
(2010)
J Mol Biol
, vol.399
, Issue.1
, pp. 145-153
-
-
Huang, C.1
Mandava, C.S.2
Sanyal, S.3
-
30
-
-
84863393350
-
Bacterial ribosome requires multiple L12 dimers for efficient initiation and elongation of protein synthesis involving IF2 and EF-G
-
Mandava CS, et al. (2012) Bacterial ribosome requires multiple L12 dimers for efficient initiation and elongation of protein synthesis involving IF2 and EF-G. Nucleic Acids Res 40(5):2054-2064.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.5
, pp. 2054-2064
-
-
Mandava, C.S.1
-
31
-
-
0032544922
-
Binding of Escherichia coli initiation factor IF2 to 30S ribosomal subunits: A functional role for the N-terminus of the factor
-
Moreno JM, Kildsgaard J, Siwanowicz I, Mortensen KK, Sperling-Petersen HU (1998) Binding of Escherichia coli initiation factor IF2 to 30S ribosomal subunits: a functional role for the N-terminus of the factor. Biochem Biophys Res Commun 252(2):465-471.
-
(1998)
Biochem Biophys Res Commun
, vol.252
, Issue.2
, pp. 465-471
-
-
Moreno, J.M.1
Kildsgaard, J.2
Siwanowicz, I.3
Mortensen, K.K.4
Sperling-Petersen, H.U.5
-
32
-
-
33748314478
-
Translation initiation factor IF2 interacts with the 30 S ribosomal subunit via two separate binding sites
-
Caserta E, et al. (2006) Translation initiation factor IF2 interacts with the 30 S ribosomal subunit via two separate binding sites. J Mol Biol 362(4):787-799.
-
(2006)
J Mol Biol
, vol.362
, Issue.4
, pp. 787-799
-
-
Caserta, E.1
-
33
-
-
74649084177
-
Ribosomal interaction of Bacillus stearothermophilus translation initiation factor IF2: Characterization of the active sites
-
Caserta E, et al. (2010) Ribosomal interaction of Bacillus stearothermophilus translation initiation factor IF2: Characterization of the active sites. J Mol Biol 396(1): 118-129.
-
(2010)
J Mol Biol
, vol.396
, Issue.1
, pp. 118-129
-
-
Caserta, E.1
-
34
-
-
56749096848
-
Translation initiation factor IF1 of B. Stearothermophilus and T. Thermophilus substitute for E. Coli IF1 in vivo and in vitro without a direct IF1-IF2 interaction
-
Kapralou S, et al. (2008) Translation initiation factor IF1 of B. stearothermophilus and T. thermophilus substitute for E. Coli IF1 in vivo and in vitro without a direct IF1-IF2 interaction. Mol Microbiol 70:1368-1377.
-
(2008)
Mol Microbiol
, vol.70
, pp. 1368-1377
-
-
Kapralou, S.1
-
35
-
-
0025744585
-
A severely truncated form of translational initiation factor 2 supports growth of Escherichia coli
-
Laalami S, Putzer H, Plumbridge JA, Grunberg-Manago M (1991) A severely truncated form of translational initiation factor 2 supports growth of Escherichia coli. J Mol Biol 220(2):335-349.
-
(1991)
J Mol Biol
, vol.220
, Issue.2
, pp. 335-349
-
-
Laalami, S.1
Putzer, H.2
Plumbridge, J.A.3
Grunberg-Manago, M.4
-
36
-
-
1542378898
-
Visualization of release factor 3 on the ribosome during termination of protein synthesis
-
Klaholz BP, Myasnikov AG, van Heel M (2004) Visualization of release factor 3 on the ribosome during termination of protein synthesis. Nature 427(6977):862-865.
-
(2004)
Nature
, vol.427
, Issue.6977
, pp. 862-865
-
-
Klaholz, B.P.1
Myasnikov, A.G.2
Van Heel, M.3
-
37
-
-
84857183093
-
Structure of the full human RXR/VDR nuclear receptor heterodimer complex with its DR3 target DNA
-
Orlov I, Rochel N, Moras D, Klaholz BP (2012) Structure of the full human RXR/VDR nuclear receptor heterodimer complex with its DR3 target DNA. EMBO J 31(2):291-300.
-
(2012)
EMBO J
, vol.31
, Issue.2
, pp. 291-300
-
-
Orlov, I.1
Rochel, N.2
Moras, D.3
Klaholz, B.P.4
-
38
-
-
0029916485
-
A new generation of the IMAGIC image processing system
-
van Heel M, Harauz G, Orlova EV, Schmidt R, Schatz M (1996) A new generation of the IMAGIC image processing system. J Struct Biol 116(1):17-24.
-
(1996)
J Struct Biol
, vol.116
, Issue.1
, pp. 17-24
-
-
Van Heel, M.1
Harauz, G.2
Orlova, E.V.3
Schmidt, R.4
Schatz, M.5
-
39
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: Semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128(1):82-97.
-
(1999)
J Struct Biol
, vol.128
, Issue.1
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
40
-
-
0043122907
-
PipeAlign: A new toolkit for protein family analysis
-
Plewniak F, et al. (2003) PipeAlign: A new toolkit for protein family analysis. Nucleic Acids Res 31(13):3829-3832.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3829-3832
-
-
Plewniak, F.1
|