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Volumn 31, Issue 13, 2003, Pages 3829-3832

PipeAlign: A new toolkit for protein family analysis

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 0043122907     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg518     Document Type: Article
Times cited : (106)

References (14)
  • 1
    • 0035972742 scopus 로고    scopus 로고
    • Multiple alignment of complete sequences (MACS) in the post-genomic era
    • Lecompte,O., Thompson,J.D., Plewniak,F., Thierry,J. and Poch,O. (2001) Multiple alignment of complete sequences (MACS) in the post-genomic era. Gene, 270, 17-30.
    • (2001) Gene , vol.270 , pp. 17-30
    • Lecompte, O.1    Thompson, J.D.2    Plewniak, F.3    Thierry, J.4    Poch, O.5
  • 2
    • 0033675717 scopus 로고    scopus 로고
    • Ballast: Blast post-processing based on locally conserved segments
    • Plewniak,F., Thompson,J.D. and Poch,O. (2000) Ballast: blast post-processing based on locally conserved segments. Bioinformatics, 9, 750-759.
    • (2000) Bioinformatics , vol.9 , pp. 750-759
    • Plewniak, F.1    Thompson, J.D.2    Poch, O.3
  • 4
    • 0034255358 scopus 로고    scopus 로고
    • DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
    • Thompson,J.D., Plewniak,F., Thierry,J. and Poch,O. (2000) DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Res., 15, 2919-2926.
    • (2000) Nucleic Acids Res. , vol.15 , pp. 2919-2926
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.3    Poch, O.4
  • 5
    • 0038391401 scopus 로고    scopus 로고
    • RASCAL: Rapid scanning and correction of multiple sequence alignment programs
    • in press
    • Thompson,J.D., Plewniak,F., Thierry,J. and Poch,O. (2003) RASCAL: Rapid scanning and correction of multiple sequence alignment programs. Bioinformatics, in press.
    • (2003) Bioinformatics
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.3    Poch, O.4
  • 6
    • 0035824873 scopus 로고    scopus 로고
    • Towards a reliable objective function for multiple sequence alignments
    • Thompson,J.D., Plewniak,F., Ripp,R., Thierry,J.C. and Poch,O. (2001) Towards a reliable objective function for multiple sequence alignments. J. Mol. Biol., 4, 937-951.
    • (2001) J. Mol. Biol. , vol.4 , pp. 937-951
    • Thompson, J.D.1    Plewniak, F.2    Ripp, R.3    Thierry, J.C.4    Poch, O.5
  • 7
    • 0034897827 scopus 로고    scopus 로고
    • Secator: A program for inferring protein subfamilies from phylogenetic trees
    • Wicker,N., Perrin,G.R., Thierry,J.C. and Poch,O. (2001) Secator: a program for inferring protein subfamilies from phylogenetic trees. Mol. Biol. Evol., 8, 1435-1441.
    • (2001) Mol. Biol. Evol. , vol.8 , pp. 1435-1441
    • Wicker, N.1    Perrin, G.R.2    Thierry, J.C.3    Poch, O.4
  • 8
    • 0037106541 scopus 로고    scopus 로고
    • Density of points clustering, application to transcriptomic data analysis
    • Wicker,N., Dembele,D., Raffelsberger,W. and Poch,O. (2002) Density of points clustering, application to transcriptomic data analysis. Nucleic Acids Res., 18, 3992-4000.
    • (2002) Nucleic Acids Res. , vol.18 , pp. 3992-4000
    • Wicker, N.1    Dembele, D.2    Raffelsberger, W.3    Poch, O.4
  • 9
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 1, 45-48.
    • (2000) Nucleic Acids Res. , vol.1 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 13
    • 0037115872 scopus 로고    scopus 로고
    • Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale
    • Lecompte,O., Ripp,R., Thierry,J.C., Moras,D. and Poch,O. (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res., 24, 5382-5390.
    • (2002) Nucleic Acids Res. , vol.24 , pp. 5382-5390
    • Lecompte, O.1    Ripp, R.2    Thierry, J.C.3    Moras, D.4    Poch, O.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.