Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

Acta Crystallographica Section D: Biological Crystallography

Volumn 69, Issue 6, 2013, Pages 925-933

  Simonetti, Angelita ^a   Marzi, Stefano ^a,b   Fabbretti, Attilio ^c   Hazemann, Isabelle ^a   Jenner, Lasse ^a   Urzhumtsev, Alexandre ^a,d   Gualerzi, Claudio O ^c   Klaholz, Bruno P ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

^b INST DE BIOL MOLEC ET CELLULAIRE   (France)

^c UNIVERSITY OF CAMERINO   (Italy)

^d UNIVERSITÉ DE LORRAINE   (France)

Author keywords

GDP; GTP; Thermus thermophilus; translation initiation factor 2

Indexed keywords

GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATE; INITIATION FACTOR 2;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; METABOLISM; THERMUS THERMOPHILUS; TRANSLATION INITIATION FACTOR 2; X RAY DIFFRACTION;

GDP; GTP; THERMUS THERMOPHILUS; TRANSLATION INITIATION FACTOR 2;

GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATE; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PROKARYOTIC INITIATION FACTOR-2; THERMUS THERMOPHILUS; X-RAY DIFFRACTION;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; THERMUS THERMOPHILUS;

EID: 84878313058     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444913006422     Document Type: Article

References (30)

1. Afonine, P. V., Echols, N., Grosse-Kunstleve, R. W., Headd, J. J., Moriarty, N. W., Mustyakimov, M., Terwilliger, T., Urzhumtsev, A., Zwart, P. H. & Adams, P. D. (2012). Acta Cryst. D68, 352-367.
2. Antoun, A., Pavlov, M. Y., Lovmar, M. & Ehrenberg, M. (2006). EMBO J. 25, 2539-2550.
3. Bourne, H. R., Sanders, D. A. & McCormick, F. (1991). Nature (London), 349, 117-127.
4. Brünger, A. T. (1992). Nature (London), 355, 472-475.
5. Cool, R. H. & Parmeggiani, A. (1991). Biochemistry, 30, 362-366.
6. Daviter, T., Wieden, H. J. & Rodnina, M. V. (2003). J. Mol. Biol. 332, 689-699.
7. DeLano, W. L. (2002). PyMOL. http://www.pymol.org.
8. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
9. Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L., Wang, C., Cheng, Z., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J. & Song, H. (2007). Cell, 129, 929-941.
10. Grigoriadou, C., Marzi, S., Kirillov, S., Gualerzi, C. O. & Cooperman, B. S. (2007). J. Mol. Biol. 373, 562-572.
11. Gualerzi, C. O., Brandi, L., Caserta, E., Garofalo, C., Lammi, M., La Teana, A., Petrelli, D., Spurio, R., Tomsic, J. & Pon, C. L. (2001). Cold Spring Harbor Symp. Quant. Biol. 66, 363-376.
12. Guenneugues, M., Caserta, E., Brandi, L., Spurio, R., Meunier, S., Pon, C. L., Boelens, R. & Gualerzi, C. O. (2000). EMBO J. 19, 5233-5240.
13. Hendrickson, W. A., Horton, J. R. & LeMaster, D. M. (1990). EMBO J. 9, 1665-1672.
14. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
15. Laurberg, M., Kristensen, O., Martemyanov, K., Gudkov, A. T., Nagaev, I., Hughes, D. & Liljas, A. (2000). J. Mol. Biol. 303, 593-603.
16. Luchin, S., Putzer, H., Hershey, J. W., Cenatiempo, Y., Grunberg-Manago, M. & Laalami, S. (1999). J. Biol. Chem. 274, 6074-6079.
17. Marshall, R. A., Aitken, C. E. & Puglisi, J. D. (2009). Mol. Cell, 35, 37-47.
18. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F. & Nyborg, J. (1995). Science, 270, 1464-1472.
19. Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449-457.
20. Pape, T. & Schneider, T. R. (2004). J. Appl. Cryst. 37, 843-844.
21. Pavlov, M. Y., Zorzet, A., Andersson, D. I. & Ehrenberg, M. (2011). EMBO J. 30, 289-301.
22. Pestova, T. V., Lomakin, I. B., Lee, J. H., Choi, S. K., Dever, T. E. & Hellen, C. U. T. (2000). Nature (London), 403, 332-335.
23. Roll-Mecak, A., Cao, C., Dever, T. E. & Burley, S. K. (2000). Cell, 103, 781-792.
24. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
25. Simonetti, A., Marzi, S., Myasnikov, A. G., Fabbretti, A., Yusupov, M., Gualerzi, C. O. & Klaholz, B. P. (2008). Nature (London), 455, 416-420.
26. Szkaradkiewicz, K., Zuleeg, T., Limmer, S. & Sprinzl, M. (2000). Eur. J. Biochem. 267, 4290-4299.
27. Thompson, J. & Dahlberg, A. E. (2004). Nucleic Acids Res. 32, 5954-5961.
28. Tomsic, J., Vitali, L. A., Daviter, T., Savelsbergh, A., Spurio, R., Striebeck, P., Wintermeyer, W., Rodnina, M. V. & Gualerzi, C. O. (2000). EMBO J. 19, 2127-2136.
29. Tsai, A., Petrov, A., Marshall, R. A., Korlach, J., Uemura, S. & Puglisi, J. D. (2012). Nature (London), 487, 390-393.
30. Wienk, H., Tishchenko, E., Belardinelli, R., Tomaselli, S., Dongre, R., Spurio, R., Folkers, G. E., Gualerzi, C. O. & Boelens, R. (2012). J. Biol. Chem. 287, 10922-10932.