-
1
-
-
85011884428
-
A bacterial canker of Corylus avellana in Greece
-
doi:10.1111/j.1439-0434.1979.tb01540.x
-
Psallidas PG, Panagopoulos CG, (1979) A bacterial canker of Corylus avellana in Greece. Phytopath Z 94: 103-111. doi:10.1111/j.1439-0434.1979.tb01540.x.
-
(1979)
Phytopath Z
, vol.94
, pp. 103-111
-
-
Psallidas, P.G.1
Panagopoulos, C.G.2
-
2
-
-
84986947180
-
Pseudomonas syringae pv. avellanae, pathovar nov., the bacterium causing canker disease on Corylus avellana
-
doi:10.1111/j.1365-3059.1993.tb01512.x
-
Psallidas PG, (1993) Pseudomonas syringae pv. avellanae, pathovar nov., the bacterium causing canker disease on Corylus avellana. Plant Pathol 42: 358-363. doi:10.1111/j.1365-3059.1993.tb01512.x.
-
(1993)
Plant Pathol
, vol.42
, pp. 358-363
-
-
Psallidas, P.G.1
-
3
-
-
85011841442
-
Severe outbreak of Pseudomonas syringae pv. avellanae on hazelnut in Italy
-
doi:10.1111/j.1439-0434.1994.tb00177.x
-
Scortichini M, Tropiano FG, (1994) Severe outbreak of Pseudomonas syringae pv. avellanae on hazelnut in Italy. J Phytopathol 140: 65-70. doi:10.1111/j.1439-0434.1994.tb00177.x.
-
(1994)
J Phytopathol
, vol.140
, pp. 65-70
-
-
Scortichini, M.1
Tropiano, F.G.2
-
4
-
-
0030479052
-
Reclassification of Pseudomonas syringae pv. avellanae as Pseudomonas avellanae (spec. nov.), the bacterium causing canker of hazelnut (Corylus avellana L.)
-
doi:10.1016/S0723-2020(96)80030-0
-
Janse JD, Rossi MP, Angelucci L, Scortichini M, Derks JHJ, et al. (1996) Reclassification of Pseudomonas syringae pv. avellanae as Pseudomonas avellanae (spec. nov.), the bacterium causing canker of hazelnut (Corylus avellana L.). Syst Appl Microbiol 19: 589-595. doi:10.1016/S0723-2020(96)80030-0.
-
(1996)
Syst Appl Microbiol
, vol.19
, pp. 589-595
-
-
Janse, J.D.1
Rossi, M.P.2
Angelucci, L.3
Scortichini, M.4
Derks, J.H.J.5
-
5
-
-
0032900419
-
DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959)
-
doi:10.1099/00207713-49-2-469
-
Gardan L, Shafik H, Belouin S, Broch R, Grimont F, et al. (1999) DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959). Int J Syst Bacteriol 49Pt 2: 469-478 doi:10.1099/00207713-49-2-469. PubMed: 10319466.
-
(1999)
Int J Syst Bacteriol
, vol.49
-
-
Gardan, L.1
Shafik, H.2
Belouin, S.3
Broch, R.4
Grimont, F.5
-
6
-
-
0036096063
-
Genetic relatedness among Pseudomonas avellanae, P. syringae pv. theae and P. s. pv. actinidiae, and their identification
-
Scortichini M, Marchesi U, Di Prospero P, (2002) Genetic relatedness among Pseudomonas avellanae, P. syringae pv. theae and P. s. pv. actinidiae, and their identification. Eur J Plant Pathol 108: 269-278.
-
(2002)
Eur J Plant Pathol
, vol.108
, pp. 269-278
-
-
Scortichini, M.1
Marchesi, U.2
Di Prospero, P.3
-
7
-
-
84856265610
-
Molecular and phenotypic variability among Pseudomonas avellanae, P. syringae pv. actinidiae and P. syringae pv. theae: the genomospecies 8 sensu Gardan et al
-
Ferrante P, Scortichini M, (2011) Molecular and phenotypic variability among Pseudomonas avellanae, P. syringae pv. actinidiae and P. syringae pv. theae: the genomospecies 8 sensu Gardan et al. 1999. J Plant Pathol 93: 659-666.
-
(2011)
J Plant Pathol
, vol.93
, pp. 659-666
-
-
Ferrante, P.1
Scortichini, M.2
-
8
-
-
0000511058
-
Differentiation of Pseudomonas avellanae strains from Greece and Italy by rep-PCR genomic fingerprinting
-
doi:10.1111/j.1439-0434.1998.tb04774.x
-
Scortichini M, Dettori MT, Rossi MP, Marchesi U, Palombi MA, (1998) Differentiation of Pseudomonas avellanae strains from Greece and Italy by rep-PCR genomic fingerprinting. J Phytopathol 146: 417-420. doi:10.1111/j.1439-0434.1998.tb04774.x.
-
(1998)
J Phytopathol
, vol.146
, pp. 417-420
-
-
Scortichini, M.1
Dettori, M.T.2
Rossi, M.P.3
Marchesi, U.4
Palombi, M.A.5
-
9
-
-
0002378510
-
Phenotypic characterization of Pseudomonas avellanae (Psallidas) Janseet al. and occurrence of colony variants
-
Scortichini M, Angelucci L, (1999) Phenotypic characterization of Pseudomonas avellanae (Psallidas) Janseet al. and occurrence of colony variants. J Plant Pathol 81: 55-61.
-
(1999)
J Plant Pathol
, vol.81
, pp. 55-61
-
-
Scortichini, M.1
Angelucci, L.2
-
10
-
-
33646703066
-
Evidence for separate origins of the two Pseudomonas avellanae lineages
-
doi:10.1111/j.1365-3059.2006.01352.x
-
Scortichini M, Natalini E, Marchesi U, (2006) Evidence for separate origins of the two Pseudomonas avellanae lineages. Plant Pathol 55: 451-457. doi:10.1111/j.1365-3059.2006.01352.x.
-
(2006)
Plant Pathol
, vol.55
, pp. 451-457
-
-
Scortichini, M.1
Natalini, E.2
Marchesi, U.3
-
11
-
-
34249048120
-
Convergent evolution of phytopathogenic pseudomonads onto hazelnut
-
doi:10.1099/mic.0.2006/001545-0
-
Wang PW, Morgan RL, Scortichini M, Guttman DS, (2007) Convergent evolution of phytopathogenic pseudomonads onto hazelnut. Microbiology 153: 2067-2073. doi:10.1099/mic.0.2006/001545-0. PubMed: 17600051.
-
(2007)
Microbiology
, vol.153
, pp. 2067-2073
-
-
Wang, P.W.1
Morgan, R.L.2
Scortichini, M.3
Guttman, D.S.4
-
12
-
-
0033865962
-
Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence
-
doi:10.1099/00207713-50-4-1563
-
Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H, (2000) Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50Pt Aprel: 1563-1589 doi:10.1099/00207713-50-4-1563. PubMed: 10939664.
-
(2000)
Int J Syst Evol Microbiol Pt Aprel
, vol.50
, pp. 1563-1589
-
-
Anzai, Y.1
Kim, H.2
Park, J.Y.3
Wakabayashi, H.4
Oyaizu, H.5
-
13
-
-
55449109855
-
Nonmedical: Pseudomonas
-
New York, Springer Verlag
-
Moore ERB, Tindall BJ, Martins Dos Santos VAP, Pieper DH, Ramos J-L, et al. (2006) Nonmedical: Pseudomonas. In: Dworkin M, eds. The Prokaryotes, vol 6, Proteobacteria: gamma subclass. New York: Springer Verlag. pp. pp. 21-28.
-
(2006)
The Prokaryotes, Vol 6, Proteobacteria: Gamma Subclass
, pp. 21-28
-
-
Dworkin, M.1
-
14
-
-
34247352001
-
Plant pathogenic Pseudomonas species
-
Dordrecht: Springer Verlag
-
Ho{double acute}fte M, De Vos P, (2006) Plant pathogenic Pseudomonas species. In: Gnanamanickam SS, eds. Plant-associated bacteria. Dordrecht: Springer Verlag. pp. pp. 507-533.
-
(2006)
Plant-Associated Bacteria
, pp. 507-533
-
-
Gnanamanickam, S.S.1
-
15
-
-
77955516907
-
DNA sequence-based analysis of the Pseudomonas species
-
Mulet M, Lalucat J, García-Valdés E, (2010) DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol 12: 1513-1530. PubMed: 20192968.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1513-1530
-
-
Mulet, M.1
Lalucat, J.2
García-Valdés, E.3
-
16
-
-
79960028477
-
Multilocus sequence typing of Pseudomonas syringae sensu lato confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley
-
doi:10.1094/PHYTO-11-10-0318
-
Bull CT, Clarke CR, Cai R, Vinatzer BA, Jardini TM, et al. (2011) Multilocus sequence typing of Pseudomonas syringae sensu lato confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley. Phytopathology 101: 847-858. doi:10.1094/PHYTO-11-10-0318. PubMed: 21323469.
-
(2011)
Phytopathology
, vol.101
, pp. 847-858
-
-
Bull, C.T.1
Clarke, C.R.2
Cai, R.3
Vinatzer, B.A.4
Jardini, T.M.5
-
17
-
-
79952898543
-
Variation in conservation of the cluster for biosynthesis of the phytotoxin phaseolotoxin in Pseudomonas syringae suggests at least two events of horizontal acquisition
-
doi:10.1016/j.resmic.2010.10.011
-
Murillo J, Bardaji L, Navarro de la Fuente L, Führer ME, Aguilera S, et al. (2011) Variation in conservation of the cluster for biosynthesis of the phytotoxin phaseolotoxin in Pseudomonas syringae suggests at least two events of horizontal acquisition. Res Microbiol 162: 253-261. doi:10.1016/j.resmic.2010.10.011. PubMed: 21187143.
-
(2011)
Res Microbiol
, vol.162
, pp. 253-261
-
-
Murillo, J.1
Bardaji, L.2
Navarro de la Fuente, L.3
Führer, M.E.4
Aguilera, S.5
-
18
-
-
84861217053
-
The mbo operon is specific and essential for biosynthesis of mangotoxin in Pseudomonas syringae
-
doi:10.1371/journal.pone.0036709
-
Carrión VJ, Arrebola E, Cazorla FM, Murillo J, de Vicente A, (2012) The mbo operon is specific and essential for biosynthesis of mangotoxin in Pseudomonas syringae. PLOS ONE 7: e36709. doi:10.1371/journal.pone.0036709. PubMed: 22615797.
-
(2012)
PLOS ONE
, vol.7
-
-
Carrión, V.J.1
Arrebola, E.2
Cazorla, F.M.3
Murillo, J.4
de Vicente, A.5
-
19
-
-
84874517965
-
Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China
-
doi:10.1371/journal.pone.0057464
-
Butler MI, Stockwell PA, Black MA, Day RC, Lamont IL, et al. (2013) Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLOS ONE 8: e57464. doi:10.1371/journal.pone.0057464. PubMed: 23555547.
-
(2013)
PLOS ONE
, vol.8
-
-
Butler, M.I.1
Stockwell, P.A.2
Black, M.A.3
Day, R.C.4
Lamont, I.L.5
-
20
-
-
84875518633
-
Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots
-
doi:10.1371/journal.pone.0059366
-
Sarris PF, Trantas EA, Baltrus DA, Bull CT, Wechter WP, et al. (2013) Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots. PLOS ONE 8: e59366. doi:10.1371/journal.pone.0059366. PubMed: 23555661.
-
(2013)
PLOS ONE
, vol.8
-
-
Sarris, P.F.1
Trantas, E.A.2
Baltrus, D.A.3
Bull, C.T.4
Wechter, W.P.5
-
21
-
-
0036407157
-
What are bacterial species?
-
doi:10.1146/annurev.micro.56.012302.160634
-
Cohan FM, (2002) What are bacterial species? Annu Rev Microbiol 56: 457-487. doi:10.1146/annurev.micro.56.012302.160634. PubMed: 12142474.
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
22
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, Kämpfer P, et al. (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52: 1043-1047. PubMed: 12054223.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.4
Kämpfer, P.5
-
23
-
-
23944437942
-
Opinion: Re-evaluating prokaryotic species
-
doi:10.1038/nrmicro1236
-
Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, et al. (2005) Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol 3: 733-739. doi:10.1038/nrmicro1236. PubMed: 16138101.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
-
24
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
doi:10.1073/pnas.0906412106
-
Richter M, Rosselló-Móra R, (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126-19131. doi:10.1073/pnas.0906412106. PubMed: 19855009.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
25
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
doi:10.1073/pnas.0409727102
-
Konstantinidis KT, Tiedje JM, (2005) Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 102: 2567-2572. doi:10.1073/pnas.0409727102. PubMed: 15701695.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
26
-
-
33846555715
-
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
-
doi:10.1099/ijs.0.64483-0
-
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, et al. (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57: 81-91. doi:10.1099/ijs.0.64483-0. PubMed: 17220447.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 81-91
-
-
Goris, J.1
Konstantinidis, K.T.2
Klappenbach, J.A.3
Coenye, T.4
Vandamme, P.5
-
27
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267. PubMed: 16221896.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
28
-
-
3042637206
-
Using consensus networks to visualize contradictory evidence for species phylogeny
-
doi:10.1093/molbev/msh145
-
Holland BR, Huber KT, Moulton V, Lockhart PJ, (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Mol Biol Evol 21: 1459-1461. doi:10.1093/molbev/msh145. PubMed: 15084681.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1459-1461
-
-
Holland, B.R.1
Huber, K.T.2
Moulton, V.3
Lockhart, P.J.4
-
29
-
-
27444438599
-
The microbial pan-genome
-
doi:10.1016/j.gde.2005.09.006
-
Medini D, Donati C, Tettelin H, Masignani V, Rappuoli R, (2005) The microbial pan-genome. Curr Opin Genet Dev 15: 589-594. doi:10.1016/j.gde.2005.09.006. PubMed: 16185861.
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 589-594
-
-
Medini, D.1
Donati, C.2
Tettelin, H.3
Masignani, V.4
Rappuoli, R.5
-
30
-
-
55049125445
-
Comparative genomics: the bacterial pan-genome
-
doi:10.1016/j.mib.2008.09.006
-
Tettelin H, Riley D, Cattuto C, Medini D, (2008) Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol 11: 472-477. doi:10.1016/j.mib.2008.09.006. PubMed: 19086349.
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 472-477
-
-
Tettelin, H.1
Riley, D.2
Cattuto, C.3
Medini, D.4
-
31
-
-
79960944810
-
Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates
-
Baltrus DA, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, et al. (2011) Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLOS Pathog 7: e1002132. PubMed: 21799664.
-
(2011)
PLOS Pathog
, vol.7
-
-
Baltrus, D.A.1
Nishimura, M.T.2
Romanchuk, A.3
Chang, J.H.4
Mukhtar, M.S.5
-
32
-
-
23944467456
-
Which species concept for pathogenic bacteria? An E-Debate
-
doi:10.1016/j.meegid.2004.03.004
-
Godreuil S, Cohan F, Shah H, Tibayrenc M, (2005) Which species concept for pathogenic bacteria? An E-Debate. Infect Genet Evol 5: 375-387. doi:10.1016/j.meegid.2004.03.004. PubMed: 16168944.
-
(2005)
Infect Genet Evol
, vol.5
, pp. 375-387
-
-
Godreuil, S.1
Cohan, F.2
Shah, H.3
Tibayrenc, M.4
-
33
-
-
77950951407
-
The impact of genomic approaches on our understanding of diversity and taxonomy of plant pathogenic bacteria
-
Norfolk: Caister Academic Press
-
Vinatzer BA, Bull CT, (2009) The impact of genomic approaches on our understanding of diversity and taxonomy of plant pathogenic bacteria. In: Jackson RW, eds. Plant Pathogenic bacteria. Genomics and molecular biology. Norfolk: Caister Academic Press. pp. pp. 37-61.
-
(2009)
Plant Pathogenic Bacteria. Genomics and Molecular Biology
, pp. 37-61
-
-
Jackson, R.W.1
-
34
-
-
0035174578
-
The species concept for prokaryotes
-
doi:10.1111/j.1574-6976.2001.tb00571.x
-
Rosselló-Mora R, Amann R, (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25: 39-67. doi:10.1111/j.1574-6976.2001.tb00571.x. PubMed: 11152940.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 39-67
-
-
Rosselló-Mora, R.1
Amann, R.2
-
35
-
-
0000770675
-
International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
doi:10.1099/00207713-37-4-463
-
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, et al. (1987) International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464. doi:10.1099/00207713-37-4-463.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
-
36
-
-
0028028182
-
Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
doi:10.1099/00207713-44-4-846
-
Stackebrandt E, Goebel BM, (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849. doi:10.1099/00207713-44-4-846.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
37
-
-
0026585263
-
How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
-
doi:10.1099/00207713-42-1-166
-
Fox GE, Wisotzkey JD, Jurtshuk P Jr., (1992) How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42: 166-170. doi:10.1099/00207713-42-1-166. PubMed: 1371061.
-
(1992)
Int J Syst Bacteriol
, vol.42
, pp. 166-170
-
-
Fox, G.E.1
Wisotzkey, J.D.2
Jurtshuk Jr., P.3
-
38
-
-
34548696115
-
16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls
-
doi:10.1128/JCM.01228-07
-
Janda JM, Abbott SL, (2007) 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls. J Clin Microbiol 45: 2761-2764. doi:10.1128/JCM.01228-07. PubMed: 17626177.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 2761-2764
-
-
Janda, J.M.1
Abbott, S.L.2
-
39
-
-
59249089471
-
Organized genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organized genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLOS Genet 5: e1000344.
-
(2009)
PLOS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
40
-
-
42549143433
-
Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theilleria
-
Kuo CH, Kissinger JC, (2008) Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theilleria. BMC Evol Biol 11: 108.
-
(2008)
BMC Evol Biol
, vol.11
, pp. 108
-
-
Kuo, C.H.1
Kissinger, J.C.2
-
41
-
-
15944379273
-
Towards a prokaryotic genomic taxonomy
-
Coenye T, Gevers D, Van de Peer Y, Vandamme P, Swings J, (2005) Towards a prokaryotic genomic taxonomy. FEMS Microbiol Rev 29: 147-167. PubMed: 15808739.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 147-167
-
-
Coenye, T.1
Gevers, D.2
Van de Peer, Y.3
Vandamme, P.4
Swings, J.5
-
42
-
-
84872836707
-
Defining bacterial species in the genomic era: Insights from the genus Acinetobacter
-
doi:10.1186/1471-2180-12-302
-
Chan JZ, Halachev MR, Loman NJ, Constantinidou C, Pallen MJ, (2012) Defining bacterial species in the genomic era: Insights from the genus Acinetobacter. BMC Microbiol 12: 302. doi:10.1186/1471-2180-12-302. PubMed: 23259572.
-
(2012)
BMC Microbiol
, vol.12
, pp. 302
-
-
Chan, J.Z.1
Halachev, M.R.2
Loman, N.J.3
Constantinidou, C.4
Pallen, M.J.5
-
43
-
-
81755184030
-
Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species
-
doi:10.1371/journal.pone.0027297
-
Marcelletti S, Ferrante P, Petriccione M, Firrao G, Scortichini M, (2011) Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species. PLOS ONE 6: e27297. doi:10.1371/journal.pone.0027297. PubMed: 22132095.
-
(2011)
PLOS ONE
, vol.6
-
-
Marcelletti, S.1
Ferrante, P.2
Petriccione, M.3
Firrao, G.4
Scortichini, M.5
-
44
-
-
33947402753
-
Discrimination of Pseudomonas syringae isolates from sweet and wild cherry using rep-PCR
-
doi:10.1007/s10658-007-9107-y
-
Vicente J, Roberts S, (2007) Discrimination of Pseudomonas syringae isolates from sweet and wild cherry using rep-PCR. Eur J Plant Pathol 117: 383-392. doi:10.1007/s10658-007-9107-y.
-
(2007)
Eur J Plant Pathol
, vol.117
, pp. 383-392
-
-
Vicente, J.1
Roberts, S.2
-
45
-
-
67349150734
-
Genetic analyses of Pseudomonas syringae isolated from Belgian fruit orchards reveal genetic variability and isolate-host relationships within the pathovar syringae, and help identify both races of the pathovar morsprunorum
-
doi:10.1007/s10658-008-9406-y
-
Gilbert V, Legros F, Maraite H, Bultreys A, (2009) Genetic analyses of Pseudomonas syringae isolated from Belgian fruit orchards reveal genetic variability and isolate-host relationships within the pathovar syringae, and help identify both races of the pathovar morsprunorum. Eur J Plant Pathol 124: 199-218. doi:10.1007/s10658-008-9406-y.
-
(2009)
Eur J Plant Pathol
, vol.124
, pp. 199-218
-
-
Gilbert, V.1
Legros, F.2
Maraite, H.3
Bultreys, A.4
-
46
-
-
79955164137
-
Characterization and genetic diversity of Pseudomonas syringae from stone fruits and hazelnut using repetitive-PCR and MLST
-
Kaluzna M, Ferrante P, Sobiczewski P, Scortichini M, (2010) Characterization and genetic diversity of Pseudomonas syringae from stone fruits and hazelnut using repetitive-PCR and MLST. J Plant Pathol 92: 781-787.
-
(2010)
J Plant Pathol
, vol.92
, pp. 781-787
-
-
Kaluzna, M.1
Ferrante, P.2
Sobiczewski, P.3
Scortichini, M.4
-
47
-
-
79952078375
-
Rapid phylogenetic identification of members of the Pseudomonas syringae species complex using the rpoD locus
-
doi:10.1111/j.1365-3059.2010.02366.x
-
Parkinson N, Bryant R, Bew J, Elphinstone J, (2011) Rapid phylogenetic identification of members of the Pseudomonas syringae species complex using the rpoD locus. Plant Pathol 60: 338-344. doi:10.1111/j.1365-3059.2010.02366.x.
-
(2011)
Plant Pathol
, vol.60
, pp. 338-344
-
-
Parkinson, N.1
Bryant, R.2
Bew, J.3
Elphinstone, J.4
-
48
-
-
0004320741
-
-
Washington, USA, American Society for Microbiology
-
Lapage SP, Sneath PHA, Lessel EF, Skerman VBD, Seeliger HPR, et al. (1992) International code of nomenclature of bacteria 1990. Revision bacteriological code. Washington, USA: American Society for Microbiology.
-
(1992)
International Code of Nomenclature of Bacteria 1990
-
-
Lapage, S.P.1
Sneath, P.H.A.2
Lessel, E.F.3
Skerman, V.B.D.4
Seeliger, H.P.R.5
-
49
-
-
77749329604
-
Demystifying the nomenclature of bacterial plant pathogens
-
Bull CT, De Boer SH, Denny TP, Firrao, Fischer-Le Saux M, et al. (2008) Demystifying the nomenclature of bacterial plant pathogens. J Plant Pathol 90: 403-417.
-
(2008)
J Plant Pathol
, vol.90
, pp. 403-417
-
-
Bull, C.T.1
De Boer, S.H.2
Denny, T.P.3
Firrao4
Fischer-Le Saux, M.5
-
50
-
-
0842323724
-
Should names reflect the evolution of bacterial species?
-
doi:10.1099/ijs.0.02782-0
-
Dellaglio F, Felis GE, Germond JE, (2004) Should names reflect the evolution of bacterial species? Int J Syst Evol Microbiol 54: 279-281. doi:10.1099/ijs.0.02782-0. PubMed: 14742494.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 279-281
-
-
Dellaglio, F.1
Felis, G.E.2
Germond, J.E.3
-
51
-
-
0038338576
-
Genetic diversity, presence of syrB gene, host preference and virulence of Pseudomonas syringae pv. syringae strains from woody and herbaceous host plants
-
doi:10.1046/j.1365-3059.2003.00860.x
-
Scortichini M, Marchesi U, Dettori M, Rossi MP, (2003) Genetic diversity, presence of syrB gene, host preference and virulence of Pseudomonas syringae pv. syringae strains from woody and herbaceous host plants. Plant Pathol 52: 277-286. doi:10.1046/j.1365-3059.2003.00860.x.
-
(2003)
Plant Pathol
, vol.52
, pp. 277-286
-
-
Scortichini, M.1
Marchesi, U.2
Dettori, M.3
Rossi, M.P.4
-
52
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
doi:10.1093/bioinformatics/btm009
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL, (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679. doi:10.1093/bioinformatics/btm009. PubMed: 17237039.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
53
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
doi:10.1186/gb-2004-5-6-p12
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5: R12. doi:10.1186/gb-2004-5-6-p12. PubMed: 14759262.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
-
54
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
doi:10.1101/gr.2289704
-
Darling AC, Mau B, Blattner FR, Perna NT, (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403. doi:10.1101/gr.2289704. PubMed: 15231754.
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
55
-
-
5344244656
-
-
R Development Core Team, Vienna, R Foundation for Statistical Computing, Available
-
R Development Core Team (2008) R: a language and environment for statistical computing. Vienna: R Foundation for Statistical Computing. Available: http://www.R-project.org.
-
(2008)
R: A Language and Environment for Statistical Computing
-
-
-
56
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
doi:10.1080/10635150390235520
-
Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704. doi:10.1080/10635150390235520. PubMed: 14530136.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
57
-
-
0034849408
-
MRBAYES: bayesian inference of phylogenetic trees
-
doi:10.1093/bioinformatics/17.8.754
-
Huelsenbeck JP, Ronquist F, (2001) MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. doi:10.1093/bioinformatics/17.8.754. PubMed: 11524383.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
58
-
-
84864453108
-
jModelTest 2: more models, new heuristics and parallel computing
-
doi:10.1038/nmeth.2111
-
Darriba D, Taboada GL, Doallo R, Posada D, (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772. doi:10.1038/nmeth.2111. PubMed: 22847109.
-
(2012)
Nat Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
59
-
-
79954529507
-
ProtTest 3: fast selection of best-fit models of protein evolution
-
doi:10.1093/bioinformatics/btr088
-
Darriba D, Taboada GL, Doallo R, Posada D, (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165. doi:10.1093/bioinformatics/btr088. PubMed: 21335321.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
60
-
-
0141626909
-
detecting putative orthologs
-
doi:10.1093/bioinformatics/btg213
-
Wall DP, Fraser HB, Hirsh AE, (2003) detecting putative orthologs. Bioinformatics 19: 1710-1711. doi:10.1093/bioinformatics/btg213. PubMed: 15593400.
-
(2003)
Bioinformatics
, vol.19
, pp. 1710-1711
-
-
Wall, D.P.1
Fraser, H.B.2
Hirsh, A.E.3
-
61
-
-
34247324752
-
BranchClust: a phylogenetic algorithm for selecting gene families
-
doi:10.1186/1471-2105-8-120
-
Poptsova MS, Gogarten JP, (2007) BranchClust: a phylogenetic algorithm for selecting gene families. BMC Bioinformatics 8: 120. doi:10.1186/1471-2105-8-120. PubMed: 17425803.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 120
-
-
Poptsova, M.S.1
Gogarten, J.P.2
-
62
-
-
1542347067
-
Neighbor-net: An agglomerative method for the construction of phylogenetic networks
-
Bryant D, Moulton V, (2004) Neighbor-net: An agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21: 255-265. PubMed: 14660700.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
63
-
-
14744273276
-
Constructing splits graphs
-
doi:10.1109/TCBB.2004.27
-
Dress AW, Huson DH, (2004) Constructing splits graphs. IEEE/ACM Trans Comput Biol Bioinform 1: 109-115. doi:10.1109/TCBB.2004.27. PubMed: 17048386.
-
(2004)
IEEE/ACM Trans Comput Biol Bioinform
, vol.1
, pp. 109-115
-
-
Dress, A.W.1
Huson, D.H.2
|