-
1
-
-
84876996023
-
Occurrence and analysis of imperfect microsatellites in diverse potyvirus genomes
-
(1)
-
Alam C.M., George B., Sharfuddin C., Jain S.K., Chakraborty S. Occurrence and analysis of imperfect microsatellites in diverse potyvirus genomes. Gene 2013, 521(2):238-244. (1).
-
(2013)
Gene
, vol.521
, Issue.2
, pp. 238-244
-
-
Alam, C.M.1
George, B.2
Sharfuddin, C.3
Jain, S.K.4
Chakraborty, S.5
-
3
-
-
0036072745
-
Tandem repeats in protein coding regions of primate genes
-
Borstnik B., Pumpernik D. Tandem repeats in protein coding regions of primate genes. Genome Res. 2002, 12:909-915.
-
(2002)
Genome Res.
, vol.12
, pp. 909-915
-
-
Borstnik, B.1
Pumpernik, D.2
-
4
-
-
0344980236
-
Compound microsatellite repeats: practical and theoretical features
-
Bull L.N., Pabon-Pena C.R., Freimer N.B. Compound microsatellite repeats: practical and theoretical features. Genome Res. 1999, 9:830-838.
-
(1999)
Genome Res.
, vol.9
, pp. 830-838
-
-
Bull, L.N.1
Pabon-Pena, C.R.2
Freimer, N.B.3
-
6
-
-
69249238007
-
Similar distribution of simple sequence repeats in diverse completed human immunodeficiency virus type 1 genomes
-
Chen M., et al. Similar distribution of simple sequence repeats in diverse completed human immunodeficiency virus type 1 genomes. FEBS Lett. 2009, 583:2959-2963.
-
(2009)
FEBS Lett.
, vol.583
, pp. 2959-2963
-
-
Chen, M.1
-
7
-
-
79953236839
-
Compound microsatellites in complete Escherichia coli genomes
-
Chen M., et al. Compound microsatellites in complete Escherichia coli genomes. FEBS Lett. 2011, 585:1072-1076.
-
(2011)
FEBS Lett.
, vol.585
, pp. 1072-1076
-
-
Chen, M.1
-
8
-
-
84865357766
-
Differential distribution of compound microsatellites in various human immunodeficiency virus type 1 complete genomes
-
Chen M., Tan Z., Zeng G., Zhuotong Z. Differential distribution of compound microsatellites in various human immunodeficiency virus type 1 complete genomes. Infect. Genet. Evol. 2012, 12:1452-1457.
-
(2012)
Infect. Genet. Evol.
, vol.12
, pp. 1452-1457
-
-
Chen, M.1
Tan, Z.2
Zeng, G.3
Zhuotong, Z.4
-
9
-
-
33646560923
-
Characterization of mononucleotide repeats in sequenced prokaryotic genomes
-
Coenye T., Vandamme P. Characterization of mononucleotide repeats in sequenced prokaryotic genomes. DNA Res. 2005, 12:221-233.
-
(2005)
DNA Res.
, vol.12
, pp. 221-233
-
-
Coenye, T.1
Vandamme, P.2
-
10
-
-
62749123509
-
Utilization of microsatellite polymorphism for differentiating herpes simplex virus type 1 strains
-
Deback C., et al. Utilization of microsatellite polymorphism for differentiating herpes simplex virus type 1 strains. J. Clin. Microbiol. 2009, 47:533-540.
-
(2009)
J. Clin. Microbiol.
, vol.47
, pp. 533-540
-
-
Deback, C.1
-
11
-
-
25844506224
-
Therapeutic development for triplet repeat expansion diseases
-
Di Prospero N.A., Fischbeck K.A. Therapeutic development for triplet repeat expansion diseases. Nat. Rev. Genet. 2005, 6:756-765.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 756-765
-
-
Di Prospero, N.A.1
Fischbeck, K.A.2
-
12
-
-
10744226741
-
Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species
-
Dieringer D., Schlotterer C. Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Res. 2003, 13:2242-2251.
-
(2003)
Genome Res.
, vol.13
, pp. 2242-2251
-
-
Dieringer, D.1
Schlotterer, C.2
-
13
-
-
33745056327
-
Tandem repeat copy number variation in protein-coding regions of the human genes
-
Dushlaine C.T.O., Edwards R.J., Park S.D., Shields D.C. Tandem repeat copy number variation in protein-coding regions of the human genes. Genome Biol. 2005, 6(8):R69.
-
(2005)
Genome Biol.
, vol.6
, Issue.8
-
-
Dushlaine, C.T.O.1
Edwards, R.J.2
Park, S.D.3
Shields, D.C.4
-
14
-
-
3042782819
-
Microsatellites: simple sequences with complex evolution
-
Ellegren H. Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 2004, 5:435-445.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
15
-
-
70449701942
-
Sense from sequence reads: methods for alignment and assembly
-
Flicek P., Birney E. Sense from sequence reads: methods for alignment and assembly. Nat. Methods 2009, 6(Suppl. 11):S6-S12.
-
(2009)
Nat. Methods
, vol.6
, Issue.SUPPL. 11
-
-
Flicek, P.1
Birney, E.2
-
16
-
-
84878261708
-
Differential distribution and occurrence of simple sequence repeats in diverse geminivirus genomes
-
George B., Mashhood A.C., Jain S.K., Sharfuddin C., Chakraborty S. Differential distribution and occurrence of simple sequence repeats in diverse geminivirus genomes. Virus Genes 2012, 45:556-566.
-
(2012)
Virus Genes
, vol.45
, pp. 556-566
-
-
George, B.1
Mashhood, A.C.2
Jain, S.K.3
Sharfuddin, C.4
Chakraborty, S.5
-
17
-
-
77956122421
-
Potyviruses and the digital revolution
-
Gibbs A.J., Ohshima K. Potyviruses and the digital revolution. Annu. Rev. Phytopathol. 2010, 48:205-223.
-
(2010)
Annu. Rev. Phytopathol.
, vol.48
, pp. 205-223
-
-
Gibbs, A.J.1
Ohshima, K.2
-
18
-
-
0033972529
-
Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism
-
Gur-Arie R., Cohen C.J., Eitan Y. Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res. 2000, 10:62-71.
-
(2000)
Genome Res.
, vol.10
, pp. 62-71
-
-
Gur-Arie, R.1
Cohen, C.J.2
Eitan, Y.3
-
19
-
-
34547526440
-
Genomic distribution of simple sequence repeats in Brassica rapa
-
Hong C. Genomic distribution of simple sequence repeats in Brassica rapa. Mol. Cells 2007, 3:349-356.
-
(2007)
Mol. Cells
, vol.3
, pp. 349-356
-
-
Hong, C.1
-
20
-
-
2542449016
-
Repetitive sequences that shape the human transcriptome
-
Jasinska A., Krzyzosiak W.J. Repetitive sequences that shape the human transcriptome. FEBS Lett. 2004, 567:136-141.
-
(2004)
FEBS Lett.
, vol.567
, pp. 136-141
-
-
Jasinska, A.1
Krzyzosiak, W.J.2
-
21
-
-
0032133324
-
High-resolution mapping of crossovers in human sperm defines a minisatellite-associated recombination hotspot
-
Jeffreys J., Murray J., Neumann R. High-resolution mapping of crossovers in human sperm defines a minisatellite-associated recombination hotspot. Mol. Cells 1998, 2:267-273.
-
(1998)
Mol. Cells
, vol.2
, pp. 267-273
-
-
Jeffreys, J.1
Murray, J.2
Neumann, R.3
-
22
-
-
14544279926
-
Survey of simple sequence repeats in completed fungal genomes
-
Karaoglu H., Lee C.M., Meyer W. Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 2005, 22:639-649.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 639-649
-
-
Karaoglu, H.1
Lee, C.M.2
Meyer, W.3
-
23
-
-
33646130830
-
Simple sequence repeats as advantageous mutators in evolution
-
Kashi Y., King D.G. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 2006, 22:253-259.
-
(2006)
Trends Genet.
, vol.22
, pp. 253-259
-
-
Kashi, Y.1
King, D.G.2
-
24
-
-
38049048656
-
The genome-wide determinants of human and chimpanzee microsatellite evolution
-
Kelkar Y.D., Tyekucheva S., Chiaromonte F., Makova K.D. The genome-wide determinants of human and chimpanzee microsatellite evolution. Genome Res. 2008, 18:30-38.
-
(2008)
Genome Res.
, vol.18
, pp. 30-38
-
-
Kelkar, Y.D.1
Tyekucheva, S.2
Chiaromonte, F.3
Makova, K.D.4
-
25
-
-
39849087537
-
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
-
Kim T.S., et al. Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genomics 2008, 9:31.
-
(2008)
BMC Genomics
, vol.9
, pp. 31
-
-
Kim, T.S.1
-
26
-
-
84859101602
-
-
Elsevier, San Diego
-
King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. Virus taxonomy: classification and nomenclature of viruses. Ninth Report of the International Committee on Taxonomy of Viruses 2012, Elsevier, San Diego.
-
(2012)
Virus taxonomy: classification and nomenclature of viruses. Ninth Report of the International Committee on Taxonomy of Viruses
-
-
King, A.M.Q.1
Adams, M.J.2
Carstens, E.B.3
Lefkowitz, E.J.4
-
27
-
-
60849108929
-
Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites
-
Kofler R., Schlotterer C., Luschutzky E., Lelley T. Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites. BMC Genomics 2008, 9:612.
-
(2008)
BMC Genomics
, vol.9
, pp. 612
-
-
Kofler, R.1
Schlotterer, C.2
Luschutzky, E.3
Lelley, T.4
-
28
-
-
77749296117
-
Genome update: the 1000th genome - a cautionary tale
-
Lagesen K., Ussery D.W., Wassenaar T.M. Genome update: the 1000th genome - a cautionary tale. Microbiology 2010, 156:603-608.
-
(2010)
Microbiology
, vol.156
, pp. 603-608
-
-
Lagesen, K.1
Ussery, D.W.2
Wassenaar, T.M.3
-
29
-
-
2442701496
-
Microsatellites within genes: structure, function, and evolution
-
Li Y.C., Korol A.B., Fahima T., Nevo E. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 2004, 21:991-1007.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 991-1007
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Nevo, E.4
-
30
-
-
0033951367
-
Selection against frameshift mutations limits microsatellite expansion in coding DNA
-
Metzgar D., Bytof J., Wills C. Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res. 2000, 10:72-80.
-
(2000)
Genome Res.
, vol.10
, pp. 72-80
-
-
Metzgar, D.1
Bytof, J.2
Wills, C.3
-
31
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante M., Hanatey M., Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 2002, 30:194-200.
-
(2002)
Nat. Genet.
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanatey, M.2
Powell, W.3
-
33
-
-
34447313409
-
IMEx: imperfect microsatellite extractor
-
Mudunuri S.B., Nagarajaram H.A. IMEx: imperfect microsatellite extractor. Bioinformatics 2007, 23:1181-1187.
-
(2007)
Bioinformatics
, vol.23
, pp. 1181-1187
-
-
Mudunuri, S.B.1
Nagarajaram, H.A.2
-
34
-
-
0029656131
-
Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers
-
Nagy P.D., Burjarski J.J. Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers. J. Virol. 1996, 70:415-426.
-
(1996)
J. Virol.
, vol.70
, pp. 415-426
-
-
Nagy, P.D.1
Burjarski, J.J.2
-
36
-
-
13844272319
-
Human cytomegalovirus (HCMV) short tandem repeats analysis in congenital infection
-
Picone O., Ville Y., Costa J.M., Rouzioux C., Leruez-Ville M. Human cytomegalovirus (HCMV) short tandem repeats analysis in congenital infection. J. Clin. Virol. 2005, 32:254-256.
-
(2005)
J. Clin. Virol.
, vol.32
, pp. 254-256
-
-
Picone, O.1
Ville, Y.2
Costa, J.M.3
Rouzioux, C.4
Leruez-Ville, M.5
-
37
-
-
58149161724
-
Genome and proteome annotation: organization, interpretation and integration
-
Reeves G.A., Talavera D., Thornton J.M. Genome and proteome annotation: organization, interpretation and integration. J. R. Soc. Interface 2009, 6:129-147.
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 129-147
-
-
Reeves, G.A.1
Talavera, D.2
Thornton, J.M.3
-
38
-
-
0035475642
-
Dynamic mutations: a decade of unstable expanded repeats in human genetic disease
-
Richards R.I. Dynamic mutations: a decade of unstable expanded repeats in human genetic disease. Hum. Mol. Genet. 2001, 10:2187-2194.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 2187-2194
-
-
Richards, R.I.1
-
39
-
-
0036567071
-
Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?
-
Rocha E.P., Matic I., Taddei F. Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?. Nucleic Acids Res. 2002, 30:1886-1894.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1886-1894
-
-
Rocha, E.P.1
Matic, I.2
Taddei, F.3
-
41
-
-
13644260107
-
Mutations in turnip mosaic virus genomes that have adapted to Raphanus sativus
-
Tan Z., Gibbs A.J., Tomitaka Y., Sanchez F., Ponz F., Ohshima K. Mutations in turnip mosaic virus genomes that have adapted to Raphanus sativus. J. Gen. Virol. 2005, 86:501-510.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 501-510
-
-
Tan, Z.1
Gibbs, A.J.2
Tomitaka, Y.3
Sanchez, F.4
Ponz, F.5
Ohshima, K.6
-
42
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
Tóth G., Gáspári Z., Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 2000, 10:967-981.
-
(2000)
Genome Res.
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
43
-
-
46449113997
-
The biological effects of simple tandem repeats: lessons from the repeat expansion diseases
-
Usdin K. The biological effects of simple tandem repeats: lessons from the repeat expansion diseases. Genome Res. 2008, 18:1011-1019.
-
(2008)
Genome Res.
, vol.18
, pp. 1011-1019
-
-
Usdin, K.1
-
44
-
-
0033865403
-
Minisatellites: mutability and genome architecture
-
Vergnaud G., Denoeud F. Minisatellites: mutability and genome architecture. Genome Res. 2000, 10:899-907.
-
(2000)
Genome Res.
, vol.10
, pp. 899-907
-
-
Vergnaud, G.1
Denoeud, F.2
-
45
-
-
0025157834
-
Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms
-
Weber J.L. Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms. Genomics 1990, 7:524-530.
-
(1990)
Genomics
, vol.7
, pp. 524-530
-
-
Weber, J.L.1
-
46
-
-
80053384207
-
Microsatellites in different potyvirus genomes: survey and analysis
-
Xiangyan Z., et al. Microsatellites in different potyvirus genomes: survey and analysis. Gene 2011, 488:52-56.
-
(2011)
Gene
, vol.488
, pp. 52-56
-
-
Xiangyan, Z.1
-
47
-
-
70849089012
-
Sequence characteristics of potato virus Y recombinants
-
Xiaojun Hu., Alexander V.K., Celeste J.B., Jim H.L. Sequence characteristics of potato virus Y recombinants. J. Gen. Virol. 2009, 90:3033-3041.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 3033-3041
-
-
Xiaojun, H.1
Alexander, V.K.2
Celeste, J.B.3
Jim, H.L.4
-
48
-
-
84865485469
-
Coevolution between simple sequence repeats (SSRs) and virus genome size
-
Zhao X., et al. Coevolution between simple sequence repeats (SSRs) and virus genome size. BMC Genomics 2012, 13:435.
-
(2012)
BMC Genomics
, vol.13
, pp. 435
-
-
Zhao, X.1
|