메뉴 건너뛰기




Volumn 585, Issue 7, 2011, Pages 1072-1076

Compound microsatellites in complete Escherichia coli genomes

Author keywords

Comparative genomics; Compound microsatellite; Escherichia coli; Microsatellite; Simple sequence repeat

Indexed keywords

COMPOUND MICROSATELLITE; MICROSATELLITE; REPETITIVE DNA; UNCLASSIFIED DRUG;

EID: 79953236839     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2011.03.005     Document Type: Article
Times cited : (38)

References (23)
  • 1
    • 69249238007 scopus 로고    scopus 로고
    • Similar distribution of simple sequence repeats in diverse completed human immunodeficiency virus type 1 genomes
    • M. Chen, Z. Tan, J. Jiang, M. Li, H. Chen, G. Shen, and R. Yu Similar distribution of simple sequence repeats in diverse completed human immunodeficiency virus type 1 genomes FEBS Lett. 583 2009 2959 2963
    • (2009) FEBS Lett. , vol.583 , pp. 2959-2963
    • Chen, M.1    Tan, Z.2    Jiang, J.3    Li, M.4    Chen, H.5    Shen, G.6    Yu, R.7
  • 2
    • 77957230850 scopus 로고    scopus 로고
    • Comprehensive analysis of simple sequence repeats in pre-miRNAs
    • M. Chen, Z. Tan, G. Zeng, and J. Peng Comprehensive analysis of simple sequence repeats in pre-miRNAs Mol. Biol. Evol. 27 2010 2227 2232
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2227-2232
    • Chen, M.1    Tan, Z.2    Zeng, G.3    Peng, J.4
  • 3
    • 33846074290 scopus 로고    scopus 로고
    • InSatDb: A microsatellite database of fully sequenced insect genomes
    • S. Archak, E. Meduri, P.S. Kumar, and J. Nagaraju InSatDb: a microsatellite database of fully sequenced insect genomes Nucleic Acids Res. 35 2007 D36 D39
    • (2007) Nucleic Acids Res. , vol.35
    • Archak, S.1    Meduri, E.2    Kumar, P.S.3    Nagaraju, J.4
  • 4
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Surveys and analysis
    • DOI 10.1101/gr.10.7.967
    • G. Toth, Z. Gaspari, and J. Jurka Microsatellites in different eukaryotic genomes: survey and analysis Genome Res. 10 2000 967 981 (Pubitemid 30608632)
    • (2000) Genome Research , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 5
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Y. Kashi, and D.G. King Simple sequence repeats as advantageous mutators in evolution Trends Genet. 22 2006 253 259
    • (2006) Trends Genet. , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 6
    • 46449113997 scopus 로고    scopus 로고
    • The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases
    • DOI 10.1101/gr.070409.107
    • K. Usdin The biological effects of simple tandem repeats: lessons from the repeat expansion diseases Genome Res. 18 2008 1011 1019 (Pubitemid 351931152)
    • (2008) Genome Research , vol.18 , Issue.7 , pp. 1011-1019
    • Usdin, K.1
  • 10
    • 0033951367 scopus 로고    scopus 로고
    • Selection against frameshift mutations limits microsatellite expansion in coding DNA
    • D. Metzgar, J. Bytof, and C. Wills Selection against frameshift mutations limits microsatellite expansion in coding DNA Genome Res. 10 2000 72 80 (Pubitemid 30095257)
    • (2000) Genome Research , vol.10 , Issue.1 , pp. 72-80
    • Metzgar, D.1    Bytof, J.2    Wills, C.3
  • 11
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • DOI 10.1038/nrg1348
    • H. Ellegren Microsatellites: simple sequences with complex evolution Nat. Rev. Genet. 5 2004 435 445 (Pubitemid 38915410)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.6 , pp. 435-445
    • Ellegren, H.1
  • 12
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • DOI 10.1093/molbev/msi057
    • H. Karaoglu, C.M. Lee, and W. Meyer Survey of simple sequence repeats in completed fungal genomes Mol. Biol. Evol. 22 2005 639 649 (Pubitemid 40299513)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.3 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.Y.2    Meyer, W.3
  • 13
    • 0033972529 scopus 로고    scopus 로고
    • Simple sequence repeats in Escherichia coli: Abundance, distribution, composition, and polymorphism
    • R. Gur-Arie, C.J. Cohen, Y. Eitan, L. Shelef, E.M. Hallerman, and Y. Kashi Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism Genome Res. 10 2000 62 71 (Pubitemid 30095256)
    • (2000) Genome Research , vol.10 , Issue.1 , pp. 62-71
    • Gur-Arie, R.1    Cohen, C.J.2    Eitan, Y.3    Shelef, L.4    Hallerman, E.M.5    Kashi, Y.6
  • 14
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function, and evolution
    • DOI 10.1093/molbev/msh073
    • Y.C. Li, A.B. Korol, T. Fahima, and E. Nevo Microsatellites within genes: structure, function, and evolution Mol. Biol. Evol. 21 2004 991 1007 (Pubitemid 38658207)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.6 , pp. 991-1007
    • Li, Y.-C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 15
    • 60849108929 scopus 로고    scopus 로고
    • Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites
    • R. Kofler, C. Schlotterer, E. Luschutzky, and T. Lelley Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites BMC Genomics 9 2008 612
    • (2008) BMC Genomics , vol.9 , pp. 612
    • Kofler, R.1    Schlotterer, C.2    Luschutzky, E.3    Lelley, T.4
  • 16
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n·(dG-dT)n polymorphisms
    • J.L. Weber Informativeness of human (dC-dA)n·(dG-dT)n polymorphisms Genomics 7 1990 524 530
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 17
    • 0344980236 scopus 로고    scopus 로고
    • Compound microsatellite repeats: Practical and theoretical features
    • DOI 10.1101/gr.9.9.830
    • L.N. Bull, C.R. Pabon-Pena, and N.B. Freimer Compound microsatellite repeats: practical and theoretical features Genome Res. 9 1999 830 838 (Pubitemid 29488441)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 830-838
    • Bull, L.N.1    Pabon-Pena, C.R.2    Freimer, N.B.3
  • 18
    • 0034952363 scopus 로고    scopus 로고
    • Escherichia coli strains colonising the gastrointestinal tract protect germfree mice against Salmonella typhimurium infection
    • DOI 10.1136/gut.49.1.47
    • S. Hudault, J. Guignot, and A.L. Servin Escherichia coli strains colonising the gastrointestinal tract protect germfree mice against Salmonella typhimurium infection Gut 49 2001 47 55 (Pubitemid 32601879)
    • (2001) Gut , vol.49 , Issue.1 , pp. 47-55
    • Hudault, S.1    Guignot, J.2    Servin, A.L.3
  • 19
    • 3843116530 scopus 로고    scopus 로고
    • Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917
    • DOI 10.1128/JB.186.16.5432-5441.2004
    • L. Grozdanov, C. Raasch, J. Schulze, U. Sonnenborn, G. Gottschalk, J. Hacker, and U. Dobrindt Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917 J. Bacteriol. 186 2004 5432 5441 (Pubitemid 39038145)
    • (2004) Journal of Bacteriology , vol.186 , Issue.16 , pp. 5432-5441
    • Grozdanov, L.1    Raasch, C.2    Schulze, J.3    Sonnenborn, U.4    Gottschalk, G.5    Hacker, J.6    Dobrindt, U.7
  • 20
    • 34447313409 scopus 로고    scopus 로고
    • IMEx: Imperfect microsatellite extractor
    • DOI 10.1093/bioinformatics/btm097
    • S.B. Mudunuri, and H.A. Nagarajaram IMEx: imperfect microsatellite extractor Bioinformatics 23 2007 1181 1187 (Pubitemid 47050532)
    • (2007) Bioinformatics , vol.23 , Issue.10 , pp. 1181-1187
    • Mudunuri, S.B.1    Nagarajaram, H.A.2
  • 21
    • 0036021704 scopus 로고    scopus 로고
    • Genome size and the accumulation of simple sequence repeats: Implications of new data from genome sequencing projects
    • DOI 10.1023/A:1016028332006
    • J.M. Hancock Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects Genetica 115 2002 93 103 (Pubitemid 34842173)
    • (2002) Genetica , vol.115 , Issue.1 , pp. 93-103
    • Hancock, J.M.1
  • 22
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • M. Morgante, M. Hanafey, and W. Powell Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes Nat. Genet. 30 2002 194 200
    • (2002) Nat. Genet. , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 23
    • 0033551777 scopus 로고    scopus 로고
    • Genetic instabilities in (CTG.CAG) repeats occur by recombination
    • J.P. Jakupciak, and R.D. Wells Genetic instabilities in (CTG.CAG) repeats occur by recombination J. Biol. Chem. 274 1999 23468 23479
    • (1999) J. Biol. Chem. , vol.274 , pp. 23468-23479
    • Jakupciak, J.P.1    Wells, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.