메뉴 건너뛰기




Volumn 583, Issue 17, 2009, Pages 2959-2963

Similar distribution of simple sequence repeats in diverse completed Human Immunodeficiency Virus Type 1 genomes

Author keywords

Human Immunodeficiency Virus Type 1; Microsatellite; Simple sequence repeat

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENOMIC INSTABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; MICROSATELLITE INSTABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RELATIVE DENSITY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SIMPLE SEQUENCE REPEAT; UNINDEXED SEQUENCE; VIRUS GENOME;

EID: 69249238007     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2009.08.004     Document Type: Article
Times cited : (50)

References (31)
  • 1
    • 39849087537 scopus 로고    scopus 로고
    • Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
    • Kim T.S., Booth J.G., Gauch Jr. H.G., Sun Q., Park J., Lee Y.H., and Lee K. Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genomics 9 (2008) 31
    • (2008) BMC Genomics , vol.9 , pp. 31
    • Kim, T.S.1    Booth, J.G.2    Gauch Jr., H.G.3    Sun, Q.4    Park, J.5    Lee, Y.H.6    Lee, K.7
  • 2
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: structure, function, and evolution
    • Li Y.C., Korol A.B., Fahima T., and Nevo E. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 21 (2004) 991-1007
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 3
    • 33845888782 scopus 로고    scopus 로고
    • Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intercoding regions
    • Rajendrakumar P., Biswal A.K., Balachandran S.M., Srinivasarao K., and Sundaram R.M. Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intercoding regions. Bioinformatics 23 (2007) 1-4
    • (2007) Bioinformatics , vol.23 , pp. 1-4
    • Rajendrakumar, P.1    Biswal, A.K.2    Balachandran, S.M.3    Srinivasarao, K.4    Sundaram, R.M.5
  • 5
    • 0033782605 scopus 로고    scopus 로고
    • Computational and experimental characterization of physically clustered simple sequence repeats in plants
    • Cardle L., Ramsay L., Milbourne D., Macaulay M., Marshall D., and Waugh R. Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156 (2000) 847-854
    • (2000) Genetics , vol.156 , pp. 847-854
    • Cardle, L.1    Ramsay, L.2    Milbourne, D.3    Macaulay, M.4    Marshall, D.5    Waugh, R.6
  • 6
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • Toth G., Gaspari Z., and Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 10 (2000) 967-981
    • (2000) Genome Res. , vol.10 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 7
    • 0033972529 scopus 로고    scopus 로고
    • Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism
    • Gur-Arie R., Cohen C.J., Eitan Y., Shelef L., Hallerman E.M., and Kashi Y. Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res. 10 (2000) 62-71
    • (2000) Genome Res. , vol.10 , pp. 62-71
    • Gur-Arie, R.1    Cohen, C.J.2    Eitan, Y.3    Shelef, L.4    Hallerman, E.M.5    Kashi, Y.6
  • 8
    • 34347209094 scopus 로고    scopus 로고
    • Simple sequence repeats in prokaryotic genomes
    • Mrazek J., Guo X., and Shah A. Simple sequence repeats in prokaryotic genomes. Proc. Natl. Acad. Sci. USA 104 (2007) 8472-8477
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 8472-8477
    • Mrazek, J.1    Guo, X.2    Shah, A.3
  • 9
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • Karaoglu H., Lee C.M., and Meyer W. Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 22 (2005) 639-649
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.2    Meyer, W.3
  • 10
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti M.V., Ranjekar P.K., and Gupta V.S. Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 18 (2001) 1161-1167
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 11
    • 56949108250 scopus 로고    scopus 로고
    • Embryonic nervous system genes predominate in searches for dinucleotide simple sequence repeats flanked by conserved sequences
    • Riley D.E., and Krieger J.N. Embryonic nervous system genes predominate in searches for dinucleotide simple sequence repeats flanked by conserved sequences. Gene 429 (2009) 74-79
    • (2009) Gene , vol.429 , pp. 74-79
    • Riley, D.E.1    Krieger, J.N.2
  • 12
    • 56949101938 scopus 로고    scopus 로고
    • UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements
    • Riley D.E., and Krieger J.N. UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements. Gene 429 (2009) 80-86
    • (2009) Gene , vol.429 , pp. 80-86
    • Riley, D.E.1    Krieger, J.N.2
  • 13
    • 52449094233 scopus 로고    scopus 로고
    • Short tandem repeats in human exons: a target for disease mutations
    • Madsen B.E., Villesen P., and Wiuf C. Short tandem repeats in human exons: a target for disease mutations. BMC Genomics 9 (2008) 410
    • (2008) BMC Genomics , vol.9 , pp. 410
    • Madsen, B.E.1    Villesen, P.2    Wiuf, C.3
  • 15
    • 38649113914 scopus 로고    scopus 로고
    • SAT, a flexible and optimized Web application for SSR marker development
    • Dereeper A., Argout X., Billot C., Rami J.F., and Ruiz M. SAT, a flexible and optimized Web application for SSR marker development. BMC Bioinformatics 8 (2007) 465
    • (2007) BMC Bioinformatics , vol.8 , pp. 465
    • Dereeper, A.1    Argout, X.2    Billot, C.3    Rami, J.F.4    Ruiz, M.5
  • 16
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh S., DeClerck G., Lukashova A., Lipovich L., Cartinhour S., and McCouch S. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11 (2001) 1441-1452
    • (2001) Genome Res. , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 17
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as a source of quantitative genetic variation
    • Kashi Y., King D., and Soller M. Simple sequence repeats as a source of quantitative genetic variation. Trends Genet. 13 (1997) 74-78
    • (1997) Trends Genet. , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Soller, M.3
  • 18
    • 0037462979 scopus 로고    scopus 로고
    • Shortening of microsatellite deoxy(CA) repeats involved in GL331-induced down-regulation of matrix metalloproteinase-9 gene expression
    • Huang T.S., Lee C.C., Chang A.C., Lin S., Chao C.C., Jou Y.S., Chu Y.W., Wu C.W., and Whang-Peng J. Shortening of microsatellite deoxy(CA) repeats involved in GL331-induced down-regulation of matrix metalloproteinase-9 gene expression. Biochem. Biophys. Res. Commun. 300 (2003) 901-907
    • (2003) Biochem. Biophys. Res. Commun. , vol.300 , pp. 901-907
    • Huang, T.S.1    Lee, C.C.2    Chang, A.C.3    Lin, S.4    Chao, C.C.5    Jou, Y.S.6    Chu, Y.W.7    Wu, C.W.8    Whang-Peng, J.9
  • 19
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: simple sequence sequences with complex evolution
    • Ellegren H. Microsatellites: simple sequence sequences with complex evolution. Nat. Rev. Genet. 5 (2004) 435-445
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 21
    • 0036268538 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 2
    • Reeves J.D., and Doms R.W. Human immunodeficiency virus type 2. J. Gen. Virol. 83 (2002) 1253-1265
    • (2002) J. Gen. Virol. , vol.83 , pp. 1253-1265
    • Reeves, J.D.1    Doms, R.W.2
  • 22
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • Morgante M., Hanafey M., and Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 30 (2002) 194-200
    • (2002) Nat. Genet. , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 23
    • 0036021704 scopus 로고    scopus 로고
    • Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects
    • Hancock J.M. Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects. Genetica 115 (2002) 93-103
    • (2002) Genetica , vol.115 , pp. 93-103
    • Hancock, J.M.1
  • 24
    • 0032539711 scopus 로고    scopus 로고
    • Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
    • Field D., and Wills C. Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc. Natl. Acad. Sci. USA 95 (1998) 1647-1652
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1647-1652
    • Field, D.1    Wills, C.2
  • 25
    • 46449113997 scopus 로고    scopus 로고
    • The biological effects of simple tandem repeats: lessons from the repeat expansion diseases
    • Usdin K. The biological effects of simple tandem repeats: lessons from the repeat expansion diseases. Genome Res. 18 (2008) 1011-1019
    • (2008) Genome Res. , vol.18 , pp. 1011-1019
    • Usdin, K.1
  • 26
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y., and King D.G. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 22 (2006) 253-259
    • (2006) Trends Genet. , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 28
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • Lagercrantz U., Ellegren H., and Andersson L. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic. Acids Res. 21 (1993) 1111-1115
    • (1993) Nucleic. Acids Res. , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Andersson, L.3
  • 29
    • 0030210005 scopus 로고    scopus 로고
    • Mating structure and nestmate relatedness in a communal bee, Andrena jacobi (Hymenoptera, Andrenidae), using microsatellites
    • Paxton R.J., Thoren M.P.A., Tengo J., Estoup A., and Pamilo P. Mating structure and nestmate relatedness in a communal bee, Andrena jacobi (Hymenoptera, Andrenidae), using microsatellites. Mol. Ecol. 5 (1996) 511-519
    • (1996) Mol. Ecol. , vol.5 , pp. 511-519
    • Paxton, R.J.1    Thoren, M.P.A.2    Tengo, J.3    Estoup, A.4    Pamilo, P.5
  • 30
    • 0030808252 scopus 로고    scopus 로고
    • Microsatellite instability in yeast: dependence on the length of the microsatellite
    • Wierdl M., Dominska M., and Petes T.D. Microsatellite instability in yeast: dependence on the length of the microsatellite. Genetics 146 (1997) 769-779
    • (1997) Genetics , vol.146 , pp. 769-779
    • Wierdl, M.1    Dominska, M.2    Petes, T.D.3
  • 31
    • 17344380921 scopus 로고    scopus 로고
    • Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide underrepresentation
    • Harr B., and Schlötterer C. Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide underrepresentation. Genetics 155 (2000) 1213-1220
    • (2000) Genetics , vol.155 , pp. 1213-1220
    • Harr, B.1    Schlötterer, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.