메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS METHODS; BIOLOGICAL EXPERIMENTS; DEVELOPMENT STAGES; DIFFERENT STAGES; DIFFERENTIALLY EXPRESSED GENE; GENE REGULATORY NETWORKS; RNA INTERFERENCE; TRANSCRIPTOME DATUM;

EID: 84884302416     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-278     Document Type: Article
Times cited : (19)

References (59)
  • 1
    • 46249096804 scopus 로고    scopus 로고
    • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    • 10.1038/nature07002, 18488015
    • Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bahler J. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008, 453(7199):1239-1243. 10.1038/nature07002, 18488015.
    • (2008) Nature , vol.453 , Issue.7199 , pp. 1239-1243
    • Wilhelm, B.T.1    Marguerat, S.2    Watt, S.3    Schubert, F.4    Wood, V.5    Goodhead, I.6    Penkett, C.J.7    Rogers, J.8    Bahler, J.9
  • 3
    • 57349168544 scopus 로고    scopus 로고
    • Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain
    • 10.1371/journal.pone.0003839, 2585789, 19052635
    • Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG. Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PloS one 2008, 3(12):e3839. 10.1371/journal.pone.0003839, 2585789, 19052635.
    • (2008) PloS one , vol.3 , Issue.12
    • Wang, X.1    Sun, Q.2    McGrath, S.D.3    Mardis, E.R.4    Soloway, P.D.5    Clark, A.G.6
  • 4
    • 66449129109 scopus 로고    scopus 로고
    • Large-scale mRNA sequencing determines global regulation of RNA editing during brain development
    • 10.1101/gr.089409.108, 2694479, 19420382
    • Wahlstedt H, Daniel C, Enstero M, Ohman M. Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. Genome Res 2009, 19(6):978-986. 10.1101/gr.089409.108, 2694479, 19420382.
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 978-986
    • Wahlstedt, H.1    Daniel, C.2    Enstero, M.3    Ohman, M.4
  • 5
  • 6
    • 33846400424 scopus 로고    scopus 로고
    • Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
    • 10.1371/journal.pbio.0050008, 1764438, 17214507
    • Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS biology 2007, 5(1):e8. 10.1371/journal.pbio.0050008, 1764438, 17214507.
    • (2007) PLoS biology , vol.5 , Issue.1
    • Faith, J.J.1    Hayete, B.2    Thaden, J.T.3    Mogno, I.4    Wierzbowski, J.5    Cottarel, G.6    Kasif, S.7    Collins, J.J.8    Gardner, T.S.9
  • 7
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    • 10.1038/ng1165, 12740579
    • Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003, 34(2):166-176. 10.1038/ng1165, 12740579.
    • (2003) Nat Genet , vol.34 , Issue.2 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'er, D.4    Botstein, D.5    Koller, D.6    Friedman, N.7
  • 8
    • 84865531378 scopus 로고    scopus 로고
    • Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells
    • 10.1186/1471-2164-13-437, 3563468, 22938179
    • Zhu M, Deng X, Joshi T, Xu D, Stacey G, Cheng J. Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells. BMC Genomics 2012, 13:437. 10.1186/1471-2164-13-437, 3563468, 22938179.
    • (2012) BMC Genomics , vol.13 , pp. 437
    • Zhu, M.1    Deng, X.2    Joshi, T.3    Xu, D.4    Stacey, G.5    Cheng, J.6
  • 14
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • 10.1093/bioinformatics/btq057, 2844994, 20147302
    • Wu TD, Nacu S. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 2010, 26(7):873-881. 10.1093/bioinformatics/btq057, 2844994, 20147302.
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2
  • 16
    • 75949111391 scopus 로고    scopus 로고
    • Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection
    • 10.1104/pp.109.148379, 2815892, 19933387
    • Libault M, Farmer A, Brechenmacher L, Drnevich J, Langley RJ, Bilgin DD, Radwan O, Neece DJ, Clough SJ, May GD, et al. Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol 2010, 152(2):541-552. 10.1104/pp.109.148379, 2815892, 19933387.
    • (2010) Plant Physiol , vol.152 , Issue.2 , pp. 541-552
    • Libault, M.1    Farmer, A.2    Brechenmacher, L.3    Drnevich, J.4    Langley, R.J.5    Bilgin, D.D.6    Radwan, O.7    Neece, D.J.8    Clough, S.J.9    May, G.D.10
  • 17
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • 10.1093/bioinformatics/btp616, 2796818, 19910308
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26(1):139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 18
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • 10.1093/bioinformatics/btp612, 19855105
    • Wang L, Feng Z, Wang X, Wang X, Zhang X. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 2010, 26(1):136-138. 10.1093/bioinformatics/btp612, 19855105.
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Wang, X.4    Zhang, X.5
  • 19
    • 60149110901 scopus 로고    scopus 로고
    • Module networks revisited: computational assessment and prioritization of model predictions
    • 10.1093/bioinformatics/btn658, 19136553
    • Joshi A, De Smet R, Marchal K, Van de Peer Y, Michoel T. Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 2009, 25(4):490-496. 10.1093/bioinformatics/btn658, 19136553.
    • (2009) Bioinformatics , vol.25 , Issue.4 , pp. 490-496
    • Joshi, A.1    De Smet, R.2    Marchal, K.3    Van de Peer, Y.4    Michoel, T.5
  • 20
    • 11244318119 scopus 로고    scopus 로고
    • Minreg: inferring an active regulator set
    • 10.1093/bioinformatics/18.suppl_1.S258, 12169555
    • Pe'er D, Regev A, Tanay A. Minreg: inferring an active regulator set. Bioinformatics 2002, 18(Suppl 1):S258-S267. 10.1093/bioinformatics/18.suppl_1.S258, 12169555.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL 1
    • Pe'er, D.1    Regev, A.2    Tanay, A.3
  • 21
    • 0036366689 scopus 로고    scopus 로고
    • Combining location and expression data for principled discovery of genetic regulatory network models
    • Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Combining location and expression data for principled discovery of genetic regulatory network models. Pac Symp Biocomput 2002, 437-449.
    • (2002) Pac Symp Biocomput , pp. 437-449
    • Hartemink, A.J.1    Gifford, D.K.2    Jaakkola, T.S.3    Young, R.A.4
  • 22
    • 0001138328 scopus 로고
    • " Algorithm AS 136: a k-means clustering algorithm"
    • Hartigan JA, Wong MA. " Algorithm AS 136: a k-means clustering algorithm" . J R Stat Soc: Ser C: Appl Stat 1979, 28(1):100-108.
    • (1979) J R Stat Soc: Ser C: Appl Stat , vol.28 , Issue.1 , pp. 100-108
    • Hartigan, J.A.1    Wong, M.A.2
  • 23
    • 77951941264 scopus 로고    scopus 로고
    • MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8
    • 10.1093/bioinformatics/btq058, 2844995, 20150411
    • Wang Z, Eickholt J, Cheng J. MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics 2010, 26(7):882-888. 10.1093/bioinformatics/btq058, 2844995, 20150411.
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 882-888
    • Wang, Z.1    Eickholt, J.2    Cheng, J.3
  • 24
    • 79953032790 scopus 로고    scopus 로고
    • A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny
    • 10.1371/journal.pone.0017906, 3063783, 21455299
    • Wang Z, Zhang XC, Le MH, Xu D, Stacey G, Cheng J. A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny. PloS one 2011, 6(3):e17906. 10.1371/journal.pone.0017906, 3063783, 21455299.
    • (2011) PloS one , vol.6 , Issue.3
    • Wang, Z.1    Zhang, X.C.2    Le, M.H.3    Xu, D.4    Stacey, G.5    Cheng, J.6
  • 25
    • 84885209138 scopus 로고    scopus 로고
    • Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks
    • Wang Z, Cao R, Cheng J. Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks. BMC Bioinforma 2013, 14(S3):S3.
    • (2013) BMC Bioinforma , vol.14 , Issue.S3
    • Wang, Z.1    Cao, R.2    Cheng, J.3
  • 27
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • 3245120, 22102590, UniProt C
    • UniProt C Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 2012, 40:D71-D75. 3245120, 22102590, UniProt C.
    • (2012) Nucleic Acids Res , vol.40
  • 28
    • 0033524422 scopus 로고    scopus 로고
    • Isolation of a cytokinin gene, ZOG1, encoding zeatin O-glucosyltransferase from Phaseolus lunatus
    • 10.1073/pnas.96.1.284, 15131, 9874810
    • Martin RC, Mok MC, Mok DW. Isolation of a cytokinin gene, ZOG1, encoding zeatin O-glucosyltransferase from Phaseolus lunatus. Proc Natl Acad Sci U S A 1999, 96(1):284-289. 10.1073/pnas.96.1.284, 15131, 9874810.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.1 , pp. 284-289
    • Martin, R.C.1    Mok, M.C.2    Mok, D.W.3
  • 29
    • 0035826722 scopus 로고    scopus 로고
    • A maize cytokinin gene encoding an O-glucosyltransferase specific to cis-zeatin
    • 10.1073/pnas.101128798, 33314, 11331778
    • Martin RC, Mok MC, Habben JE, Mok DW. A maize cytokinin gene encoding an O-glucosyltransferase specific to cis-zeatin. Proc Natl Acad Sci U S A 2001, 98(10):5922-5926. 10.1073/pnas.101128798, 33314, 11331778.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.10 , pp. 5922-5926
    • Martin, R.C.1    Mok, M.C.2    Habben, J.E.3    Mok, D.W.4
  • 30
    • 33846693324 scopus 로고    scopus 로고
    • A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis
    • 10.1126/science.1132514, 17110535
    • Murray JD, Karas BJ, Sato S, Tabata S, Amyot L, Szczyglowski K. A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis. Science 2007, 315(5808):101-104. 10.1126/science.1132514, 17110535.
    • (2007) Science , vol.315 , Issue.5808 , pp. 101-104
    • Murray, J.D.1    Karas, B.J.2    Sato, S.3    Tabata, S.4    Amyot, L.5    Szczyglowski, K.6
  • 31
    • 33846709825 scopus 로고    scopus 로고
    • A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis
    • 10.1126/science.1132397, 17110537
    • Tirichine L, Sandal N, Madsen LH, Radutoiu S, Albrektsen AS, Sato S, Asamizu E, Tabata S, Stougaard J. A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis. Science 2007, 315(5808):104-107. 10.1126/science.1132397, 17110537.
    • (2007) Science , vol.315 , Issue.5808 , pp. 104-107
    • Tirichine, L.1    Sandal, N.2    Madsen, L.H.3    Radutoiu, S.4    Albrektsen, A.S.5    Sato, S.6    Asamizu, E.7    Tabata, S.8    Stougaard, J.9
  • 32
    • 84857937365 scopus 로고    scopus 로고
    • Nodule numbers are governed by interaction between CLE peptides and cytokinin signaling
    • 10.1111/j.1365-313X.2011.04881.x, 22168914
    • Mortier V, De Wever E, Vuylsteke M, Holsters M, Goormachtig S. Nodule numbers are governed by interaction between CLE peptides and cytokinin signaling. Plant J 2012, 70(3):367-376. 10.1111/j.1365-313X.2011.04881.x, 22168914.
    • (2012) Plant J , vol.70 , Issue.3 , pp. 367-376
    • Mortier, V.1    De Wever, E.2    Vuylsteke, M.3    Holsters, M.4    Goormachtig, S.5
  • 33
    • 33750972586 scopus 로고    scopus 로고
    • The Medicago truncatula CRE1 cytokinin receptor regulates lateral root development and early symbiotic interaction with Sinorhizobium meliloti
    • 10.1105/tpc.106.043778, 1626621, 17028204
    • Gonzalez-Rizzo S, Crespi M, Frugier F. The Medicago truncatula CRE1 cytokinin receptor regulates lateral root development and early symbiotic interaction with Sinorhizobium meliloti. Plant Cell 2006, 18(10):2680-2693. 10.1105/tpc.106.043778, 1626621, 17028204.
    • (2006) Plant Cell , vol.18 , Issue.10 , pp. 2680-2693
    • Gonzalez-Rizzo, S.1    Crespi, M.2    Frugier, F.3
  • 35
    • 34447506667 scopus 로고    scopus 로고
    • Quantifying similarity between motifs
    • 10.1186/gb-2007-8-2-r24, 1852410, 17324271
    • Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Quantifying similarity between motifs. Genome Biol 2007, 8(2):R24. 10.1186/gb-2007-8-2-r24, 1852410, 17324271.
    • (2007) Genome Biol , vol.8 , Issue.2
    • Gupta, S.1    Stamatoyannopoulos, J.A.2    Bailey, T.L.3    Noble, W.S.4
  • 36
    • 77956587485 scopus 로고    scopus 로고
    • The salt- and drought-inducible poplar GRAS protein SCL7 confers salt and drought tolerance in Arabidopsis thaliana
    • 10.1093/jxb/erq217, 2935874, 20616154
    • Ma HS, Liang D, Shuai P, Xia XL, Yin WL. The salt- and drought-inducible poplar GRAS protein SCL7 confers salt and drought tolerance in Arabidopsis thaliana. J Exp Bot 2010, 61(14):4011-4019. 10.1093/jxb/erq217, 2935874, 20616154.
    • (2010) J Exp Bot , vol.61 , Issue.14 , pp. 4011-4019
    • Ma, H.S.1    Liang, D.2    Shuai, P.3    Xia, X.L.4    Yin, W.L.5
  • 37
    • 20544441300 scopus 로고    scopus 로고
    • NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription
    • 10.1126/science.1111025, 15961669
    • Smit P, Raedts J, Portyanko V, Debelle F, Gough C, Bisseling T, Geurts R. NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription. Science 2005, 308(5729):1789-1791. 10.1126/science.1111025, 15961669.
    • (2005) Science , vol.308 , Issue.5729 , pp. 1789-1791
    • Smit, P.1    Raedts, J.2    Portyanko, V.3    Debelle, F.4    Gough, C.5    Bisseling, T.6    Geurts, R.7
  • 39
    • 20544474319 scopus 로고    scopus 로고
    • Nodulation signaling in legumes requires NSP2, a member of the GRAS family of transcriptional regulators
    • 10.1126/science.1110951, 15961668
    • Kalo P, Gleason C, Edwards A, Marsh J, Mitra RM, Hirsch S, Jakab J, Sims S, Long SR, Rogers J, et al. Nodulation signaling in legumes requires NSP2, a member of the GRAS family of transcriptional regulators. Science 2005, 308(5729):1786-1789. 10.1126/science.1110951, 15961668.
    • (2005) Science , vol.308 , Issue.5729 , pp. 1786-1789
    • Kalo, P.1    Gleason, C.2    Edwards, A.3    Marsh, J.4    Mitra, R.M.5    Hirsch, S.6    Jakab, J.7    Sims, S.8    Long, S.R.9    Rogers, J.10
  • 40
    • 33845624616 scopus 로고    scopus 로고
    • Lotus japonicus nodulation requires two GRAS domain regulators, one of which is functionally conserved in a non-legume
    • 10.1104/pp.106.089508, 1676053, 17071642
    • Heckmann AB, Lombardo F, Miwa H, Perry JA, Bunnewell S, Parniske M, Wang TL, Downie JA. Lotus japonicus nodulation requires two GRAS domain regulators, one of which is functionally conserved in a non-legume. Plant Physiol 2006, 142(4):1739-1750. 10.1104/pp.106.089508, 1676053, 17071642.
    • (2006) Plant Physiol , vol.142 , Issue.4 , pp. 1739-1750
    • Heckmann, A.B.1    Lombardo, F.2    Miwa, H.3    Perry, J.A.4    Bunnewell, S.5    Parniske, M.6    Wang, T.L.7    Downie, J.A.8
  • 41
    • 77956942005 scopus 로고    scopus 로고
    • Function of GRAS proteins in root nodule symbiosis is retained in homologs of a non-legume, rice
    • 10.1093/pcp/pcq124, 20719766
    • Yokota K, Soyano T, Kouchi H, Hayashi M. Function of GRAS proteins in root nodule symbiosis is retained in homologs of a non-legume, rice. Plant Cell Physiol 2010, 51(9):1436-1442. 10.1093/pcp/pcq124, 20719766.
    • (2010) Plant Cell Physiol , vol.51 , Issue.9 , pp. 1436-1442
    • Yokota, K.1    Soyano, T.2    Kouchi, H.3    Hayashi, M.4
  • 42
    • 0028155769 scopus 로고
    • The flavonoid biosynthetic pathway in plants: Function and evolution
    • Koes RE, Francesca Quattrocchio MJN. The flavonoid biosynthetic pathway in plants: Function and evolution. BioEssays 1994, 16(2):123-132.
    • (1994) BioEssays , vol.16 , Issue.2 , pp. 123-132
    • Koes, R.E.1    Francesca Quattrocchio, M.J.N.2
  • 43
    • 0034048249 scopus 로고    scopus 로고
    • Plant GRAS and metazoan STATs: one family?
    • 10.1002/(SICI)1521-1878(200006)22:6<573::AID-BIES10>3.0.CO;2-H, 10842311
    • Richards DE, Richards DE, Peng J, Harberd NP. Plant GRAS and metazoan STATs: one family?. Bioessays 2000, 22(6):573-577. 10.1002/(SICI)1521-1878(200006)22:6<573::AID-BIES10>3.0.CO;2-H, 10842311.
    • (2000) Bioessays , vol.22 , Issue.6 , pp. 573-577
    • Richards, D.E.1    Richards, D.E.2    Peng, J.3    Harberd, N.P.4
  • 44
    • 84886398874 scopus 로고    scopus 로고
    • Nodulation signaling in legumes depends on an NSP1-NSP2 complex
    • Nancy AE. Nodulation signaling in legumes depends on an NSP1-NSP2 complex. Plant Cell 2009, 21(2):367.
    • (2009) Plant Cell , vol.21 , Issue.2 , pp. 367
    • Nancy, A.E.1
  • 46
    • 79956208081 scopus 로고    scopus 로고
    • Arginine Decarboxylase expression, polyamines biosynthesis and reactive oxygen species during organogenic nodule formation in hop
    • 10.4161/psb.6.2.14503, 3121987, 21415599
    • Fortes AM, Costa J, Santos F, Segui-Simarro JM, Palme K, Altabella T, Tiburcio AF, Pais MS. Arginine Decarboxylase expression, polyamines biosynthesis and reactive oxygen species during organogenic nodule formation in hop. Plant Signal Behav 2011, 6(2):258-269. 10.4161/psb.6.2.14503, 3121987, 21415599.
    • (2011) Plant Signal Behav , vol.6 , Issue.2 , pp. 258-269
    • Fortes, A.M.1    Costa, J.2    Santos, F.3    Segui-Simarro, J.M.4    Palme, K.5    Altabella, T.6    Tiburcio, A.F.7    Pais, M.S.8
  • 48
    • 70350645175 scopus 로고    scopus 로고
    • MicroRNAs in the rhizobia legume symbiosis
    • 10.1104/pp.109.144345, 2773061, 19789286
    • Simon SA, Meyers BC, Sherrier DJ. MicroRNAs in the rhizobia legume symbiosis. Plant Physiology 2009, 151(3):1002-1008. 10.1104/pp.109.144345, 2773061, 19789286.
    • (2009) Plant Physiology , vol.151 , Issue.3 , pp. 1002-1008
    • Simon, S.A.1    Meyers, B.C.2    Sherrier, D.J.3
  • 49
    • 0011128014 scopus 로고
    • Physiology of the legume nodule and its response to stress
    • Wash KB. Physiology of the legume nodule and its response to stress. Soil Biol Biochem 1995, 27:637-655.
    • (1995) Soil Biol Biochem , vol.27 , pp. 637-655
    • Wash, K.B.1
  • 50
    • 41649088015 scopus 로고    scopus 로고
    • Enhancement in leghemoglobin content of root nodules by exclusion of solar UV-A and UV-B radiation in soybean
    • Chouhan S, Chauhan K, Kataria S, Guruprasad KN. Enhancement in leghemoglobin content of root nodules by exclusion of solar UV-A and UV-B radiation in soybean. J Plant Biol 2008, 51(2):132-138.
    • (2008) J Plant Biol , vol.51 , Issue.2 , pp. 132-138
    • Chouhan, S.1    Chauhan, K.2    Kataria, S.3    Guruprasad, K.N.4
  • 51
    • 0042284991 scopus 로고    scopus 로고
    • Hydratases involved in nitrile conversion: screening, characterization and application
    • Yamada H, Shimizu S, Kobayashi M. Hydratases involved in nitrile conversion: screening, characterization and application. Chemical Rec 2001, 1(2):152-161.
    • (2001) Chemical Rec , vol.1 , Issue.2 , pp. 152-161
    • Yamada, H.1    Shimizu, S.2    Kobayashi, M.3
  • 53
    • 0036087169 scopus 로고    scopus 로고
    • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
    • 10.1093/nar/30.1.268, 99153, 11752312
    • Gough J, Chothia C. SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. Nucleic Acids Res 2002, 30(1):268-272. 10.1093/nar/30.1.268, 99153, 11752312.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 268-272
    • Gough, J.1    Chothia, C.2
  • 54
    • 70450195786 scopus 로고    scopus 로고
    • GRAS-domain transcription factors that regulate plant development
    • 10.4161/psb.4.8.9176, 2801379, 19820314
    • Hirsch S, Oldroyd GE. GRAS-domain transcription factors that regulate plant development. Plant Signal Behav 2009, 4(8):698-700. 10.4161/psb.4.8.9176, 2801379, 19820314.
    • (2009) Plant Signal Behav , vol.4 , Issue.8 , pp. 698-700
    • Hirsch, S.1    Oldroyd, G.E.2
  • 55
    • 64749101372 scopus 로고    scopus 로고
    • GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula
    • 10.1105/tpc.108.064501, 2660633, 19252081
    • Hirsch S, Kim J, Munoz A, Heckmann AB, Downie JA, Oldroyd GE. GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula. Plant cell 2009, 21(2):545-557. 10.1105/tpc.108.064501, 2660633, 19252081.
    • (2009) Plant cell , vol.21 , Issue.2 , pp. 545-557
    • Hirsch, S.1    Kim, J.2    Munoz, A.3    Heckmann, A.B.4    Downie, J.A.5    Oldroyd, G.E.6
  • 56
    • 84886398874 scopus 로고    scopus 로고
    • Nodulation signaling in legumes depends on an NSP1-NSP2 complex
    • Eckardt NA. Nodulation signaling in legumes depends on an NSP1-NSP2 complex. Plant cell 2009, 21(2):367.
    • (2009) Plant cell , vol.21 , Issue.2 , pp. 367
    • Eckardt, N.A.1
  • 57
    • 60149110901 scopus 로고    scopus 로고
    • Module networks revisited: computational assessment and prioritization of model predictions
    • 10.1093/bioinformatics/btn658, 19136553
    • Joshi A, De Smet R, Marchal K, Van de Peer Y, Michoel T. Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 2009, 25(4):490-496. 10.1093/bioinformatics/btn658, 19136553.
    • (2009) Bioinformatics , vol.25 , Issue.4 , pp. 490-496
    • Joshi, A.1    De Smet, R.2    Marchal, K.3    Van de Peer, Y.4    Michoel, T.5
  • 58
    • 44649141367 scopus 로고    scopus 로고
    • Coordinating nodule morphogenesis with rhizobial infection in legumes
    • 10.1146/annurev.arplant.59.032607.092839, 18444906
    • Oldroyd GE, Downie JA. Coordinating nodule morphogenesis with rhizobial infection in legumes. Annu Rev Plant Biol 2008, 59:519-546. 10.1146/annurev.arplant.59.032607.092839, 18444906.
    • (2008) Annu Rev Plant Biol , vol.59 , pp. 519-546
    • Oldroyd, G.E.1    Downie, J.A.2
  • 59
    • 0023664060 scopus 로고
    • A small family of nodule specific genes from soybean
    • 10.1093/nar/15.4.1507, 340564, 3822835
    • Sandal NN, Bojsen K, Marcker KA. A small family of nodule specific genes from soybean. Nucleic Acids Res 1987, 15:1507-1519. 10.1093/nar/15.4.1507, 340564, 3822835.
    • (1987) Nucleic Acids Res , vol.15 , pp. 1507-1519
    • Sandal, N.N.1    Bojsen, K.2    Marcker, K.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.