-
1
-
-
0033831984
-
Geochemical and biological aspects of sulfide mineral dissolution: lessons from Iron Mountain, California
-
Edwards KJ, Bond PL, Druschel GK, McGuire MM, Hamers RJ, Banfield JF. 2000. Geochemical and biological aspects of sulfide mineral dissolution: lessons from Iron Mountain, California. Chem. Geol. 169:383-397.
-
(2000)
Chem. Geol.
, vol.169
, pp. 383-397
-
-
Edwards, K.J.1
Bond, P.L.2
Druschel, G.K.3
McGuire, M.M.4
Hamers, R.J.5
Banfield, J.F.6
-
2
-
-
0037212781
-
Biomineralization of metalcontaining ores and concentrates
-
Rawlings DE, Dew D, du Plessis C. 2003. Biomineralization of metalcontaining ores and concentrates. Trends Biotechnol. 21:38-44.
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 38-44
-
-
Rawlings, D.E.1
Dew, D.2
Du Plessis, C.3
-
3
-
-
33847195791
-
The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia
-
Rawlings DE, Johnson DB. 2007. The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia. Microbiology 153:315-324.
-
(2007)
Microbiology
, vol.153
, pp. 315-324
-
-
Rawlings, D.E.1
Johnson, D.B.2
-
4
-
-
0033754225
-
Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems
-
Bond PL, Druschel GK, Banfield JF. 2000. Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems. Appl. Environ. Microbiol. 66:4962-4971.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4962-4971
-
-
Bond, P.L.1
Druschel, G.K.2
Banfield, J.F.3
-
5
-
-
0037447834
-
Microbial communities in acid mine drainage
-
Baker BJ, Banfield JF. 2003. Microbial communities in acid mine drainage. FEMS Microbiol. Ecol. 44:139-152.
-
(2003)
FEMS Microbiol. Ecol.
, vol.44
, pp. 139-152
-
-
Baker, B.J.1
Banfield, J.F.2
-
6
-
-
19144366548
-
Acid mine drainage biogeochemistry at Iron Mountain, California
-
doi:10.1186/1467-4866-5-13
-
Druschel GK, Baker BJ, Gihring TM, Banfield JF. 2004. Acid mine drainage biogeochemistry at Iron Mountain, California. Geochem. Trans. 5:13. doi:10.1186/1467-4866-5-13.
-
(2004)
Geochem. Trans.
, vol.5
, pp. 13
-
-
Druschel, G.K.1
Baker, B.J.2
Gihring, T.M.3
Banfield, J.F.4
-
7
-
-
0036151760
-
Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40°C
-
Coram NJ, Rawlings DE. 2002. Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40°C. Appl. Environ. Microbiol. 68:838-845.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 838-845
-
-
Coram, N.J.1
Rawlings, D.E.2
-
8
-
-
0034026744
-
Leptospirillum gen. nov. (ex Markosyan 1972), nom. rev.
-
including Leptospirillum ferrooxidans sp. nov. (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al 1992)
-
Hippe H. 2000. Leptospirillum gen. nov. (ex Markosyan 1972), nom. rev., including Leptospirillum ferrooxidans sp. nov. (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al 1992). Int. J. Syst. Evol. Microbiol. 50:501-503.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 501-503
-
-
Hippe, H.1
-
9
-
-
26844447711
-
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp
-
Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. 2005. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Appl. Environ. Microbiol. 71:6319-6324.
-
(2005)
nov. from an acidophilic microbial community. Appl. Environ. Microbiol.
, vol.71
, pp. 6319-6324
-
-
Tyson, G.W.1
Lo, I.2
Baker, B.J.3
Allen, E.E.4
Hugenholtz, P.5
Banfield, J.F.6
-
10
-
-
33846086061
-
Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste
-
Diaby N, Dold B, Pfeifer HR, Holliger C, Johnson DB, Hallberg KB. 2007. Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste. Environ. Microbiol. 9:298-307.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 298-307
-
-
Diaby, N.1
Dold, B.2
Pfeifer, H.R.3
Holliger, C.4
Johnson, D.B.5
Hallberg, K.B.6
-
11
-
-
34848812544
-
Microbial populations in acid mineral bioleaching systems of Tong Shankou copper mine, China
-
Xie X, Xiao S, He Z, Liu J, Qiu G. 2007. Microbial populations in acid mineral bioleaching systems of Tong Shankou copper mine, China. J. Appl. Microbiol. 103:1227-1238.
-
(2007)
J. Appl. Microbiol.
, vol.103
, pp. 1227-1238
-
-
Xie, X.1
Xiao, S.2
He, Z.3
Liu, J.4
Qiu, G.5
-
12
-
-
35748965835
-
Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Rio Tinto (SW, Spain)
-
Garcia-Moyano A, Gonzalez-Toril E, Aguilera A, Amils R. 2007. Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Rio Tinto (SW, Spain). Syst. Appl. Microbiol. 30:601-614.
-
(2007)
Syst. Appl. Microbiol.
, vol.30
, pp. 601-614
-
-
Garcia-Moyano, A.1
Gonzalez-Toril, E.2
Aguilera, A.3
Amils, R.4
-
13
-
-
72449208472
-
Microbial diversity and genetic response to stress conditions of extremophilic bacteria isolated from the Escondida copper mine
-
Galleguillos PA, Hallberg KB, Johnson DB. 2009. Microbial diversity and genetic response to stress conditions of extremophilic bacteria isolated from the Escondida copper mine. Adv. Materials Res. 71-73:55-58.
-
(2009)
Adv. Materials Res.
, vol.71-73
, pp. 55-58
-
-
Galleguillos, P.A.1
Hallberg, K.B.2
Johnson, D.B.3
-
14
-
-
6344285446
-
Nitrogen fixation in acidophile ironoxidizing bacteria: the nif regulon of Leptospirillum ferrooxidans
-
Parro V, Moreno-Paz M. 2004. Nitrogen fixation in acidophile ironoxidizing bacteria: the nif regulon of Leptospirillum ferrooxidans. Res. Microbiol. 155:703-709.
-
(2004)
Res. Microbiol.
, vol.155
, pp. 703-709
-
-
Parro, V.1
Moreno-Paz, M.2
-
15
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF. 2007. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446:537- 541.
-
(2007)
Nature
, vol.446
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
Verberkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
DiBartolo, G.6
Tyson, G.W.7
Allen, E.E.8
Ram, R.J.9
Detter, J.C.10
Richardson, P.11
Thelen, M.P.12
Hettich, R.L.13
Banfield, J.F.14
-
16
-
-
67649576309
-
Community genomic and proteomic analyses of chemoautotrophic ironoxidizing "Leptospirillum rubarum" (group II) and "Leptospirillum ferrodiazotrophum" (group III) bacteria in acid mine drainage biofilms
-
Goltsman DSA, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF. 2009. Community genomic and proteomic analyses of chemoautotrophic ironoxidizing "Leptospirillum rubarum" (group II) and "Leptospirillum ferrodiazotrophum" (group III) bacteria in acid mine drainage biofilms. Appl. Environ. Microbiol. 75:4599-4615.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 4599-4615
-
-
Goltsman, D.S.A.1
Denef, V.J.2
Singer, S.W.3
VerBerkmoes, N.C.4
Lefsrud, M.5
Mueller, R.S.6
Dick, G.J.7
Sun, C.L.8
Wheeler, K.E.9
Zemla, A.10
Baker, B.J.11
Hauser, L.12
Land, M.13
Shah, M.B.14
Thelen, M.P.15
Hettich, R.L.16
Banfield, J.F.17
-
17
-
-
48349103531
-
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
-
doi:10.1371/journal.pbio.0060177
-
Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF. 2008. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol. 6:e177. doi:10.1371/journal.pbio.0060177.
-
(2008)
PLoS Biol.
, vol.6
-
-
Simmons, S.L.1
Dibartolo, G.2
Denef, V.J.3
Goltsman, D.S.4
Thelen, M.P.5
Banfield, J.F.6
-
18
-
-
84555194881
-
Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation
-
Mi S, Song J, Lin J, Che Y, Zheng H, Lin J. 2011. Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation. J. Microbiol. 49:890-901.
-
(2011)
J. Microbiol.
, vol.49
, pp. 890-901
-
-
Mi, S.1
Song, J.2
Lin, J.3
Che, Y.4
Zheng, H.5
Lin, J.6
-
19
-
-
84866324305
-
Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan
-
Fujimura R, Sato Y, Nishizawa T, Oshima K, Kim SW, Hattori M, Kamijo T, Ohta H. 2012. Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan. J. Bacteriol. 194:4122-4123.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4122-4123
-
-
Fujimura, R.1
Sato, Y.2
Nishizawa, T.3
Oshima, K.4
Kim, S.W.5
Hattori, M.6
Kamijo, T.7
Ohta, H.8
-
20
-
-
58549114486
-
Natural acidophilic biofilm communities reflect distinct organismal and functional organization
-
Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF. 2009. Natural acidophilic biofilm communities reflect distinct organismal and functional organization. ISME J. 3:266-270.
-
(2009)
ISME J
, vol.3
, pp. 266-270
-
-
Wilmes, P.1
Remis, J.P.2
Hwang, M.3
Auer, M.4
Thelen, M.P.5
Banfield, J.F.6
-
21
-
-
84860160394
-
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids
-
Denef VJ, Banfield JF. 2012. In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science 336:462- 466.
-
(2012)
Science
, vol.336
, pp. 462-466
-
-
Denef, V.J.1
Banfield, J.F.2
-
22
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. 2004. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
23
-
-
77349126360
-
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
-
Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. 2010. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proc. Natl. Acad. Sci. U. S. A. 107:2383-2390.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 2383-2390
-
-
Denef, V.J.1
Kalnejais, L.H.2
Mueller, R.S.3
Wilmes, P.4
Baker, B.J.5
Thomas, B.C.6
VerBerkmoes, N.C.7
Hettich, R.L.8
Banfield, J.F.9
-
24
-
-
79961036057
-
Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community
-
Mueller RS, Dill BD, Pan C, Belnap CP, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. 2011. Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environ. Microbiol. 13:2279-2292.
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 2279-2292
-
-
Mueller, R.S.1
Dill, B.D.2
Pan, C.3
Belnap, C.P.4
Thomas, B.C.5
VerBerkmoes, N.C.6
Hettich, R.L.7
Banfield, J.F.8
-
25
-
-
77954846383
-
Environmental transcriptome analysis reveals physiological differences between biofilm and planktonic modes of life of the iron oxidizing bacteria Leptospirillum spp
-
doi: 10.1186/1471-2164-11-404
-
Moreno-Paz M, Gomez MJ, Arcas A, Parro V. 2010. Environmental transcriptome analysis reveals physiological differences between biofilm and planktonic modes of life of the iron oxidizing bacteria Leptospirillum spp. in their natural microbial community. BMC Genomics 11:404. doi: 10.1186/1471-2164-11-404.
-
(2010)
in their natural microbial community. BMC Genomics
, vol.11
, pp. 404
-
-
Moreno-Paz, M.1
Gomez, M.J.2
Arcas, A.3
Parro, V.4
-
26
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, II, Shah M, Hettich RL, Banfield JF. 2005. Community proteomics of a natural microbial biofilm. Science 308:1915-1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
Verberkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake, R.C.6
Shah, M.7
Hettich, R.L.8
Banfield, J.F.9
-
27
-
-
33750699996
-
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
-
Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP. 2006. Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40:303-311.
-
(2006)
Methods
, vol.40
, pp. 303-311
-
-
Florens, L.1
Carozza, M.J.2
Swanson, S.K.3
Fournier, M.4
Coleman, M.K.5
Workman, J.L.6
Washburn, M.P.7
-
28
-
-
77953272819
-
Ecological distribution and population physiology defined by proteomics in a natural microbial community
-
doi:10.1038/msb.2010.30
-
Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P, Smith RL, Nordstrom DK, McCleskey RB, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. 2010. Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol. Syst. Biol. 6:374. doi:10.1038/msb.2010.30.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 374
-
-
Mueller, R.S.1
Denef, V.J.2
Kalnejais, L.H.3
Suttle, K.B.4
Thomas, B.C.5
Wilmes, P.6
Smith, R.L.7
Nordstrom, D.K.8
McCleskey, R.B.9
Shah, M.B.10
Verberkmoes, N.C.11
Hettich, R.L.12
Banfield, J.F.13
-
29
-
-
0036134231
-
Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization
-
Hugenholtz P, Tyson GW, Blackall LL. 2002. Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization. Methods Mol. Biol. 179:29-42.
-
(2002)
Methods Mol. Biol.
, vol.179
, pp. 29-42
-
-
Hugenholtz, P.1
Tyson, G.W.2
Blackall, L.L.3
-
30
-
-
44449133775
-
Virus population dynamics and acquired virus resistance in natural microbial communities
-
Andersson AF, Banfield JF. 2008. Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320: 1047-1050.
-
(2008)
Science
, vol.320
, pp. 1047-1050
-
-
Andersson, A.F.1
Banfield, J.F.2
-
31
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
doi:10.1186/gb-2009-10-8-r85
-
Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. 2009. Community-wide analysis of microbial genome sequence signatures. Genome Biol. 10:R85. doi:10.1186/gb-2009-10-8-r85.
-
(2009)
Genome Biol.
, vol.10
-
-
Dick, G.J.1
Andersson, A.F.2
Baker, B.J.3
Simmons, S.L.4
Thomas, B.C.5
Yelton, A.P.6
Banfield, J.F.7
-
32
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
33
-
-
77950063427
-
Cultivation and quantitative proteomic analyses of acidophilic microbial communities
-
Belnap CP, Pan C, VerBerkmoes NC, Power ME, Samatova NF, Carver RL, Hettich RL, Banfield JF. 2010. Cultivation and quantitative proteomic analyses of acidophilic microbial communities. ISME J. 4:520- 530.
-
(2010)
ISME J.
, vol.4
, pp. 520-530
-
-
Belnap, C.P.1
Pan, C.2
VerBerkmoes, N.C.3
Power, M.E.4
Samatova, N.F.5
Carver, R.L.6
Hettich, R.L.7
Banfield, J.F.8
-
34
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA
-
doi:10.1093/nar/gkp596
-
Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, Lehrach H, Soldatov A. 2009. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37:e123. doi:10.1093/nar/gkp596.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Parkhomchuk, D.1
Borodina, T.2
Amstislavskiy, V.3
Banaru, M.4
Hallen, L.5
Krobitsch, S.6
Lehrach, H.7
Soldatov, A.8
-
35
-
-
79956041561
-
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
-
doi:10 .1186/gb-2011-12-5-r44
-
Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. 2011. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol. 12:R44. doi:10 .1186/gb-2011-12-5-r44.
-
(2011)
Genome Biol.
, vol.12
-
-
Miller, C.S.1
Baker, B.J.2
Thomas, B.C.3
Singer, S.W.4
Banfield, J.F.5
-
36
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Unit 11.7. doi:10.1002/0471250953.bi1107s32
-
Langmead B. 2010. Aligning short sequencing reads with Bowtie. Curr. Protoc. Bioinformatics Chapter 11:Unit 11.7. doi:10.1002/0471250953 .bi1107s32.
-
(2010)
Curr. Protoc. Bioinformatics Chapter
, vol.11
-
-
Langmead, B.1
-
37
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar Buchner, A.6
Lai, T.7
Steppi, S.8
Jobb, G.9
Forster, W.10
Brettske, I.11
Gerber, S.12
Ginhart, A.W.13
Gross, O.14
Grumann, S.15
Hermann, S.16
Jost, R.17
Konig, A.18
Liss, T.19
Lussmann, R.20
May, M.21
Nonhoff, B.22
Reichel, B.23
Strehlow, R.24
Stamatakis, A.25
Stuckmann, N.26
Vilbig, A.27
Lenke, M.28
Ludwig, T.29
Bode, A.30
Schleifer, K.H.31
more..
-
38
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc. 4:363-371.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
39
-
-
77954299402
-
3DLigandSite: predicting ligand-binding sites using similar structures
-
Wass MN, Kelley LA, Sternberg MJ. 2010. 3DLigandSite: predicting ligand-binding sites using similar structures. Nucleic Acids Res. 38: W469-W473.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Wass, M.N.1
Kelley, L.A.2
Sternberg, M.J.3
-
41
-
-
9444225935
-
Java Treeview- extensible visualization of microarray data
-
Saldanha AJ. 2004. Java Treeview- extensible visualization of microarray data. Bioinformatics 20:3246-3248.
-
(2004)
Bioinformatics
, vol.20
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
42
-
-
77952691194
-
Enigmatic, ultrasmall, uncultivated Archaea
-
Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF. 2010. Enigmatic, ultrasmall, uncultivated Archaea. Proc. Natl. Acad. Sci. U. S. A. 107:8806-8811.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 8806-8811
-
-
Baker, B.J.1
Comolli, L.R.2
Dick, G.J.3
Hauser, L.J.4
Hyatt, D.5
Dill, B.D.6
Land, M.L.7
Verberkmoes, N.C.8
Hettich, R.L.9
Banfield, J.F.10
-
43
-
-
72049114963
-
Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology
-
Kosman DJ. 2010. Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology. J. Biol. Inorg. Chem. 15:15-28.
-
(2010)
J. Biol. Inorg. Chem.
, vol.15
, pp. 15-28
-
-
Kosman, D.J.1
-
44
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV. 2011. Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol. 9:467-477.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
Vander Oost, J.11
Koonin, E.V.12
-
45
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P. 2007. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
48
-
-
84870851163
-
Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities
-
Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. 2012. Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Appl. Environ. Microbiol. 78: 8321-8330.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 8321-8330
-
-
Justice, N.B.1
Pan, C.2
Mueller, R.3
Spaulding, S.E.4
Shah, V.5
Sun, C.L.6
Yelton, A.P.7
Miller, C.S.8
Thomas, B.C.9
Shah, M.10
VerBerkmoes, N.11
Hettich, R.12
Banfield, J.F.13
-
49
-
-
33947302827
-
Taxonomic parameters revisited: tarnished gold standards
-
Stackebrandt E, Ebers J. 2006. Taxonomic parameters revisited: tarnished gold standards. Microbiology Today 33:152-155.
-
(2006)
Microbiology Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
50
-
-
0036202033
-
Anaerobic respiration using Fe(3+), S(0), and H(2) in the chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans
-
Ohmura N, Sasaki K, Matsumoto N, Saiki H. 2002. Anaerobic respiration using Fe(3+), S(0), and H(2) in the chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans. J. Bacteriol. 184:2081-2087.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2081-2087
-
-
Ohmura, N.1
Sasaki, K.2
Matsumoto, N.3
Saiki, H.4
-
51
-
-
79955973710
-
Micron-scale Fe2+/Fe3+, intermediate sulfurspecies and O2 gradients across the biofilm-solution-sediment interface control biofilm organization
-
Ma S, Banfield JF. 2011. Micron-scale Fe2+/Fe3+, intermediate sulfurspecies and O2 gradients across the biofilm-solution-sediment interface control biofilm organization. Geochim. Cosmochim. Acta 75:3568-3580.
-
(2011)
Geochim. Cosmochim. Acta
, vol.75
, pp. 3568-3580
-
-
Ma, S.1
Banfield, J.F.2
-
52
-
-
43449096010
-
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community
-
Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP. 2008. Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. ISME J. 2:542-550.
-
(2008)
ISME J.
, vol.2
, pp. 542-550
-
-
Jeans, C.1
Singer, S.W.2
Chan, C.S.3
Verberkmoes, N.C.4
Shah, M.5
Hettich, R.L.6
Banfield, J.F.7
Thelen, M.P.8
-
53
-
-
84855653203
-
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
-
Bonnefoy V, Holmes DS. 2012. Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments. Environ. Microbiol. 14:1597-1611.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 1597-1611
-
-
Bonnefoy, V.1
Holmes, D.S.2
-
54
-
-
47749144837
-
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community
-
Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP. 2008. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Appl. Environ. Microbiol. 74:4454-4462.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 4454-4462
-
-
Singer, S.W.1
Chan, C.S.2
Zemla, A.3
VerBerkmoes, N.C.4
Hwang, M.5
Hettich, R.L.6
Banfield, J.F.7
Thelen, M.P.8
-
55
-
-
84871718604
-
In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an obligatory intermediate in the aerobic iron respiratory chain
-
doi:10.3389/fmicb.2012.00136
-
Blake RC, II, Griff MN. 2012. In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an obligatory intermediate in the aerobic iron respiratory chain. Front. Microbiol. 3:136. doi:10.3389/fmicb.2012.00136.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 136
-
-
Blake, R.C.1
Griff, M.N.2
-
56
-
-
78149359126
-
Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
-
Cardenas JP, Valdes J, Quatrini R, Duarte F, Holmes DS. 2010. Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms. Appl. Microbiol. Biotechnol. 88:605-620.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.88
, pp. 605-620
-
-
Cardenas, J.P.1
Valdes, J.2
Quatrini, R.3
Duarte, F.4
Holmes, D.S.5
|