-
1
-
-
0035189927
-
Embryo-derived stem cells: Of mice and men
-
DOI 10.1146/annurev.cellbio.17.1.435
-
Smith, A.G. Embryo-derived stem cells: of mice and men. Annu. Rev. Cell Dev. Biol. 17, 435-462 (2001). (Pubitemid 33096183)
-
(2001)
Annual Review of Cell and Developmental Biology
, vol.17
, pp. 435-462
-
-
Smith, A.G.1
-
2
-
-
66049117813
-
Naive and primed pluripotent states
-
Nichols, J. & Smith, A. Naive and primed pluripotent states. Cell Stem Cell 4, 487-492 (2009).
-
(2009)
Cell Stem Cell
, vol.4
, pp. 487-492
-
-
Nichols, J.1
Smith, A.2
-
3
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
Loh, Y.-H. et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat. Genet. 38, 431-440 (2006).
-
(2006)
Nat. Genet
, vol.38
, pp. 431-440
-
-
Loh, Y.-H.1
-
4
-
-
79958252915
-
Chromatin connections to pluripotency and cellular reprogramming
-
Orkin, S.H. & Hochedlinger, K. Chromatin connections to pluripotency and cellular reprogramming. Cell 145, 835-850 (2011).
-
(2011)
Cell
, vol.145
, pp. 835-850
-
-
Orkin, S.H.1
Hochedlinger, K.2
-
5
-
-
40749104852
-
An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
-
DOI 10.1016/j.cell.2008.02.039, PII S0092867408003280
-
Kim, J., Chu, J., Shen, X., Wang, J. & Orkin, S.H. An extended transcriptional network for pluripotency of embryonic stem cells. Cell 132, 1049-1061 (2008). (Pubitemid 351381745)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 1049-1061
-
-
Kim, J.1
Chu, J.2
Shen, X.3
Wang, J.4
Orkin, S.H.5
-
6
-
-
44649117905
-
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
-
DOI 10.1016/j.cell.2008.04.043, PII S009286740800617X
-
Chen, X. et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133, 1106-1117 (2008). (Pubitemid 351787745)
-
(2008)
Cell
, vol.133
, Issue.6
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.-H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque, G.19
Sung, W.-K.20
Clarke, N.D.21
Wei, C.-L.22
Ng, H.-H.23
more..
-
7
-
-
79952660821
-
Control of the embryonic stem cell state
-
Young, R.A. Control of the embryonic stem cell state. Cell 144, 940-954 (2011).
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
8
-
-
84871683601
-
Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency
-
Hansson, J. et al. Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency. Cell Rep. 2, 1579-1592 (2012).
-
(2012)
Cell Rep
, vol.2
, pp. 1579-1592
-
-
Hansson, J.1
-
9
-
-
84871586080
-
A molecular roadmap of reprogramming somatic cells into iPS cells
-
Polo, J.M. et al. A molecular roadmap of reprogramming somatic cells into iPS cells. Cell 151, 1617-1632 (2012).
-
(2012)
Cell
, vol.151
, pp. 1617-1632
-
-
Polo, J.M.1
-
10
-
-
42649126705
-
A Hierarchical Network Controls Protein Translation during Murine Embryonic Stem Cell Self-Renewal and Differentiation
-
DOI 10.1016/j.stem.2008.03.013, PII S1934590908001276
-
Sampath, P. et al. A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation. Cell Stem Cell 2, 448-460 (2008). (Pubitemid 351598082)
-
(2008)
Cell Stem Cell
, vol.2
, Issue.5
, pp. 448-460
-
-
Sampath, P.1
Pritchard, D.K.2
Pabon, L.3
Reinecke, H.4
Schwartz, S.M.5
Morris, D.R.6
Murry, C.E.7
-
11
-
-
70450160004
-
Systems-level dynamic analyses of fate change in murine embryonic stem cells
-
Lu, R. et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462, 358-362 (2009).
-
(2009)
Nature
, vol.462
, pp. 358-362
-
-
Lu, R.1
-
12
-
-
5044229348
-
Molecular mechanisms of translational control
-
DOI 10.1038/nrm1488
-
Gebauer, F. & Hentze, M.W. Molecular mechanisms of translational control. Nat. Rev. Mol. Cell Biol. 5, 827-835 (2004). (Pubitemid 39336276)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.10
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.W.2
-
13
-
-
40449092963
-
Trading translation with RNA-binding proteins
-
DOI 10.1261/rna.848208
-
Abaza, I. & Gebauer, F. Trading translation with RNA-binding proteins. RNA 14, 404-409 (2008). (Pubitemid 351397804)
-
(2008)
RNA
, vol.14
, Issue.3
, pp. 404-409
-
-
Abaza, I.1
Gebauer, F.2
-
14
-
-
44449166478
-
RNA-binding proteins and post-transcriptional gene regulation
-
Glisovic, T., Bachorik, J.L., Yong, J. & Dreyfuss, G. RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett. 582, 1977-1986 (2008).
-
(2008)
FEBS Lett
, vol.582
, pp. 1977-1986
-
-
Glisovic, T.1
Bachorik, J.L.2
Yong, J.3
Dreyfuss, G.4
-
15
-
-
79954989654
-
Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression
-
Kishore, S., Luber, S. & Zavolan, M. Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression. Brief. Funct. Genomics 9, 391-404 (2010).
-
(2010)
Brief. Funct. Genomics
, vol.9
, pp. 391-404
-
-
Kishore, S.1
Luber, S.2
Zavolan, M.3
-
16
-
-
77958594113
-
Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae
-
Tsvetanova, N.G., Klass, D.M., Salzman, J. & Brown, P.O. Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae. PLoS ONE 5, e12671 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Tsvetanova, N.G.1
Klass, D.M.2
Salzman, J.3
Brown, P.O.4
-
17
-
-
78649736872
-
A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes
-
Scherrer, T., Mittal, N., Janga, S.C. & Gerber, A.P. A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes. PLoS ONE 5, e15499 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Scherrer, T.1
Mittal, N.2
Janga, S.C.3
Gerber, A.P.4
-
18
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello, A. et al. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149, 1393-1406 (2012).
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
-
19
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz, A.G. et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 46, 674-690 (2012).
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
-
21
-
-
84872051030
-
Global analysis of yeast mRNPs
-
Mitchell, S.F., Jain, S., She, M. & Parker, R. Global analysis of yeast mRNPs. Nat. Struct. Mol. Biol. 20, 127-133 (2013).
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 127-133
-
-
Mitchell, S.F.1
Jain, S.2
She, M.3
Parker, R.4
-
22
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
König, J. et al. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat. Struct. Mol. Biol. 17, 909-915 (2010).
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 909-915
-
-
König, J.1
-
23
-
-
84936744064
-
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
-
Sugimoto, Y. et al. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions. Genome Biol. 13, R67 (2012).
-
(2012)
Genome Biol
, vol.13
-
-
Sugimoto, Y.1
-
24
-
-
66149121109
-
Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains
-
Lau, C.-K., Bachorik, J.L. & Dreyfuss, G. Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains. Nat. Struct. Mol. Biol. 16, 486-491 (2009).
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 486-491
-
-
Lau, C.-K.1
Bachorik, J.L.2
Dreyfuss, G.3
-
25
-
-
33847795359
-
Intrinsic disorder and functional proteomics
-
DOI 10.1529/biophysj.106.094045
-
Radivojac, P. et al. Intrinsic disorder and functional proteomics. Biophys. J. 92, 1439-1456 (2007). (Pubitemid 46393458)
-
(2007)
Biophysical Journal
, vol.92
, Issue.5
, pp. 1439-1456
-
-
Radivojac, P.1
Iakoucheva, L.M.2
Oldfield, C.J.3
Obradovic, Z.4
Uversky, V.N.5
Dunker, A.K.6
-
26
-
-
3442902456
-
The role of structural disorder in the function of RNA and protein chaperones
-
DOI 10.1096/fj.04-1584rev
-
Tompa, P. & Csermely, P. The role of structural disorder in the function of RNA and protein chaperones. FASEB J. 18, 1169-1175 (2004). (Pubitemid 39006878)
-
(2004)
FASEB Journal
, vol.18
, Issue.11
, pp. 1169-1175
-
-
Tompa, P.1
Csermely, P.2
-
27
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
DOI 10.1038/nrm1589
-
Dyson, H.J. & Wright, P.E. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6, 197-208 (2005). (Pubitemid 40314921)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.3
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
28
-
-
84860863700
-
Cell-free formation of RNA granules: Bound RNAs identify features and components of cellular assemblies
-
Han, T.W. et al. Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies. Cell 149, 768-779 (2012).
-
(2012)
Cell
, vol.149
, pp. 768-779
-
-
Han, T.W.1
-
29
-
-
84860872161
-
Cell-free formation of RNA granules: Low complexity sequence domains form dynamic fibers within hydrogels
-
Kato, M. et al. Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell 149, 753-767 (2012).
-
(2012)
Cell
, vol.149
, pp. 753-767
-
-
Kato, M.1
-
30
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi, S.W., Zang, J.B., Mele, A. & Darnell, R.B. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460, 479-486 (2009).
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
31
-
-
0242497663
-
CLIP Identifies Nova-Regulated RNA Networks in the Brain
-
DOI 10.1126/science.1090095
-
Ule, J. et al. CLIP identifies Nova-regulated RNA networks in the brain. Science 302, 1212-1215 (2003). (Pubitemid 37421026)
-
(2003)
Science
, vol.302
, Issue.5648
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
32
-
-
84869086143
-
LIN28A is a suppressor of ER-associated translation in embryonic stem cells
-
Cho, J. et al. LIN28A is a suppressor of ER-associated translation in embryonic stem cells. Cell 151, 765-777 (2012).
-
(2012)
Cell
, vol.151
, pp. 765-777
-
-
Cho, J.1
-
33
-
-
41449118521
-
Module Map of Stem Cell Genes Guides Creation of Epithelial Cancer Stem Cells
-
DOI 10.1016/j.stem.2008.02.009, PII S1934590908000738
-
Wong, D.J. et al. Module map of stem cell genes guides creation of epithelial cancer stem cells. Cell Stem Cell 2, 333-344 (2008). (Pubitemid 351455242)
-
(2008)
Cell Stem Cell
, vol.2
, Issue.4
, pp. 333-344
-
-
Wong, D.J.1
Liu, H.2
Ridky, T.W.3
Cassarino, D.4
Segal, E.5
Chang, H.Y.6
-
34
-
-
42649112047
-
An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors
-
DOI 10.1038/ng.127, PII NG127
-
Ben-Porath, I. et al. An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nat. Genet. 40, 499-507 (2008). (Pubitemid 351601215)
-
(2008)
Nature Genetics
, vol.40
, Issue.5
, pp. 499-507
-
-
Ben-Porath, I.1
Thomson, M.W.2
Carey, V.J.3
Ge, R.4
Bell, G.W.5
Regev, A.6
Weinberg, R.A.7
-
35
-
-
11144355188
-
Gene expression in human embryonic stem cell lines: Unique molecular signature
-
DOI 10.1182/blood-2003-09-3314
-
Bhattacharya, B. et al. Gene expression in human embryonic stem cell lines: unique molecular signature. Blood 103, 2956-2964 (2004). (Pubitemid 38451667)
-
(2004)
Blood
, vol.103
, Issue.8
, pp. 2956-2964
-
-
Bhattacharya, B.1
Miura, T.2
Brandenberger, R.3
Mejido, J.4
Luo, Y.5
Yang, A.X.6
Joshi, B.H.7
Ginis, I.8
Thies, R.S.9
Amit, M.10
Lyons, I.11
Condie, B.G.12
Itskovitz-Eldor, J.13
Rao, M.S.14
Puri, R.K.15
-
36
-
-
33746773659
-
Dissecting self-renewal in stem cells with RNA interference
-
DOI 10.1038/nature04915, PII NATURE04915
-
Ivanova, N. et al. Dissecting self-renewal in stem cells with RNA interference. Nature 442, 533-538 (2006). (Pubitemid 44167907)
-
(2006)
Nature
, vol.442
, Issue.7102
, pp. 533-538
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
DeCoste, C.6
Schafer, X.7
Lun, Y.8
Lemischka, I.R.9
-
37
-
-
80052297694
-
Control of embryonic stem cell lineage commitment by core promoter factor, TAF3
-
Liu, Z., Scannell, D.R., Eisen, M.B. & Tjian, R. Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. Cell 146, 720-731 (2011).
-
(2011)
Cell
, vol.146
, pp. 720-731
-
-
Liu, Z.1
Scannell, D.R.2
Eisen, M.B.3
Tjian, R.4
-
38
-
-
79955781599
-
L1TD1 is a marker for undifferentiated human embryonic stem cells
-
Wong, R.C.-B. et al. L1TD1 is a marker for undifferentiated human embryonic stem cells. PLoS ONE 6, e19355 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Wong, R.C.-B.1
-
39
-
-
84857498937
-
RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation
-
Närvä, E. et al. RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation. Stem Cells 30, 452-460 (2012).
-
(2012)
Stem Cells
, vol.30
, pp. 452-460
-
-
Närvä, E.1
-
40
-
-
79957573197
-
ECAT11/L1td1 is enriched in ESCs and rapidly activated during iPSC generation, but it is dispensable for the maintenance and induction of pluripotency
-
Iwabuchi, K.A. et al. ECAT11/L1td1 is enriched in ESCs and rapidly activated during iPSC generation, but it is dispensable for the maintenance and induction of pluripotency. PLoS ONE 6, e20461 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Iwabuchi, K.A.1
-
41
-
-
77957757417
-
A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs
-
Kim, J. et al. A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs. Cell 143, 313-324 (2010).
-
(2010)
Cell
, vol.143
, pp. 313-324
-
-
Kim, J.1
-
42
-
-
84863329878
-
Trim71 cooperates with microRNAs to repress Cdkn1a expression and promote embryonic stem cell proliferation
-
Chang, H.-M. et al. Trim71 cooperates with microRNAs to repress Cdkn1a expression and promote embryonic stem cell proliferation. Nat. Commun. 3, 923 (2012).
-
(2012)
Nat. Commun
, vol.3
, pp. 923
-
-
Chang, H.-M.1
-
43
-
-
61349107172
-
TRIM-NHL proteins take on miRNA regulation
-
Loedige, I. & Filipowicz, W. TRIM-NHL proteins take on miRNA regulation. Cell 136, 818-820 (2009).
-
(2009)
Cell
, vol.136
, pp. 818-820
-
-
Loedige, I.1
Filipowicz, W.2
-
44
-
-
84871745666
-
The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function
-
Loedige, I., Gaidatzis, D., Sack, R., Meister, G. & Filipowicz, W. The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function. Nucleic Acids Res. 41, 518-532 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 518-532
-
-
Loedige, I.1
Gaidatzis, D.2
Sack, R.3
Meister, G.4
Filipowicz, W.5
-
45
-
-
80054848955
-
TRIM proteins and cancer
-
Hatakeyama, S. TRIM proteins and cancer. Nat. Rev. Cancer 11, 792-804 (2011).
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 792-804
-
-
Hatakeyama, S.1
-
46
-
-
67449086728
-
Characterization and potential function of a novel pre-implantation embryo-specific RING finger protein: TRIML1
-
Tian, L. et al. Characterization and potential function of a novel pre-implantation embryo-specific RING finger protein: TRIML1. Mol. Reprod. Dev. 76, 656-664 (2009).
-
(2009)
Mol. Reprod. Dev
, vol.76
, pp. 656-664
-
-
Tian, L.1
-
47
-
-
65349123354
-
A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity
-
Ding, L. et al. A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity. Cell Stem Cell 4, 403-415 (2009).
-
(2009)
Cell Stem Cell
, vol.4
, pp. 403-415
-
-
Ding, L.1
-
48
-
-
64349096829
-
A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal
-
Hu, G. et al. A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal. Genes Dev. 23, 837-848 (2009).
-
(2009)
Genes Dev
, vol.23
, pp. 837-848
-
-
Hu, G.1
-
49
-
-
78149465975
-
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity
-
Chia, N.-Y. et al. A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. Nature 468, 316-320 (2010).
-
(2010)
Nature
, vol.468
, pp. 316-320
-
-
Chia, N.-Y.1
-
50
-
-
79953853830
-
The Trypanosoma brucei zinc-finger protein ZC3H18 is involved in differentiation
-
Benz, C., Mulindwa, J., Ouna, B. & Clayton, C. The Trypanosoma brucei zinc-finger protein ZC3H18 is involved in differentiation. Mol. Biochem. Parasitol. 177, 148-151 (2011).
-
(2011)
Mol. Biochem. Parasitol
, vol.177
, pp. 148-151
-
-
Benz, C.1
Mulindwa, J.2
Ouna, B.3
Clayton, C.4
-
51
-
-
84861813715
-
Sequential gain of mutations in severe congenital neutropenia progressing to acute myeloid leukemia
-
Beekman, R. et al. Sequential gain of mutations in severe congenital neutropenia progressing to acute myeloid leukemia. Blood 119, 5071-5077 (2012).
-
(2012)
Blood
, vol.119
, pp. 5071-5077
-
-
Beekman, R.1
-
52
-
-
84857126437
-
Genome-wide siRNA screen for mediators of NF-?B activation
-
Gewurz, B.E. et al. Genome-wide siRNA screen for mediators of NF-?B activation. Proc. Natl. Acad. Sci. USA 109, 2467-2472 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 2467-2472
-
-
Gewurz, B.E.1
-
53
-
-
0347323165
-
The CCR4-NOT Complex Plays Diverse Roles in mRNA Metabolism
-
DOI 10.1016/S0079-6603(03)01007-9, PII S0079660303010079
-
Denis, C.L. & Chen, J. The CCR4-NOT complex plays diverse roles in mRNA metabolism. Prog. Nucleic Acid Res. Mol. Biol. 73, 221-250 (2003). (Pubitemid 137639544)
-
(2003)
Progress in Nucleic Acid Research and Molecular Biology
, vol.73
, pp. 221-250
-
-
Denis, C.L.1
Chen, J.2
-
54
-
-
84860534158
-
Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation
-
Zheng, X. et al. Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation. Stem Cells 30, 910-922 (2012).
-
(2012)
Stem Cells
, vol.30
, pp. 910-922
-
-
Zheng, X.1
-
55
-
-
0033607520
-
The role of human MBF1 as a transcriptional coactivator
-
Kabe, Y. et al. The role of human MBF1 as a transcriptional coactivator. J. Biol. Chem. 274, 34196-34202 (1999). (Pubitemid 129511757)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.48
, pp. 34196-34202
-
-
Kabe, Y.1
Goto, M.2
Shima, D.3
Imai, T.4
Wada, T.5
Morohashi, K.-I.6
Shirakawa, M.7
Hirose, S.8
Handa, H.9
-
56
-
-
0030788571
-
Multiprotein bridging factor 1 (MBF1) is an evolutionarily conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein
-
Takemaru, K.-i., Li, F.Q., Ueda, H. & Hirose, S. Multiprotein bridging factor 1 (MBF1) is an evolutionarily conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein. Proc. Natl. Acad. Sci. USA 94, 7251-7256 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7251-7256
-
-
Takemaru, K.-I.1
Li, F.Q.2
Ueda, H.3
Hirose, S.4
-
57
-
-
0031840977
-
Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation
-
Takemaru, K.-i., Harashima, S., Ueda, H. & Hirose, S. Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation. Mol. Cell Biol. 18, 4971-4976 (1998). (Pubitemid 28388079)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.9
, pp. 4971-4976
-
-
Takemaru, K.-I.1
Harashima, S.2
Ueda, H.3
Hirose, S.4
-
58
-
-
85047681665
-
Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism
-
DOI 10.1210/me.16.6.1367
-
Brendel, C., Gelman, L. & Auwerx, J. Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism. Mol. Endocrinol. 16, 1367-1377 (2002). (Pubitemid 34621082)
-
(2002)
Molecular Endocrinology
, vol.16
, Issue.6
, pp. 1367-1377
-
-
Brendel, C.1
Gelman, L.2
Auwerx, J.3
-
59
-
-
0032553433
-
EDF-1, a novel gene product down-regulated in human endothelial cell differentiation
-
DOI 10.1074/jbc.273.47.31119
-
Dragoni, I., Mariotti, M., Consalez, G.G., Soria, M.R. & Maier, J.a. EDF-1, a novel gene product down-regulated in human endothelial cell differentiation. J. Biol. Chem. 273, 31119-31124 (1998). (Pubitemid 28533122)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.47
, pp. 31119-31124
-
-
Dragoni, I.1
Mariotti, M.2
Consalez, G.G.3
Soria, M.R.4
Maier, J.A.M.5
-
60
-
-
33845888271
-
Triggering neural differentiation of ES cells by subtype switching of importin-α
-
DOI 10.1038/ncb1521, PII NCB1521
-
Yasuhara, N. et al. Triggering neural differentiation of ES cells by subtype switching of importin-?. Nat. Cell Biol. 9, 72-79 (2007). (Pubitemid 46024199)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.1
, pp. 72-79
-
-
Yasuhara, N.1
Shibazaki, N.2
Tanaka, S.3
Nagai, M.4
Kamikawa, Y.5
Oe, S.6
Asally, M.7
Kamachi, Y.8
Kondoh, H.9
Yoneda, Y.10
-
61
-
-
27244444559
-
TRIM family proteins: Retroviral restriction and antiviral defence
-
DOI 10.1038/nrmicro1248, PII N1248
-
Nisole, S., Stoye, J.P. & Saïb, A. TRIM family proteins: retroviral restriction and antiviral defence. Nat. Rev. Microbiol. 3, 799-808 (2005). (Pubitemid 41518740)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.10
, pp. 799-808
-
-
Nisole, S.1
Stoye, J.P.2
Saib, A.3
-
62
-
-
0037142070
-
Efp targets 14-3-3 for proteolysis and promotes breast tumour growth
-
Urano, T. et al. Efp targets 14-3-3? for proteolysis and promotes breast tumour growth. Nature 417, 871-875 (2002).
-
(2002)
Nature
, vol.417
, pp. 871-875
-
-
Urano, T.1
-
63
-
-
34247341367
-
TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity
-
DOI 10.1038/nature05732, PII NATURE05732
-
Gack, M.U. et al. TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity. Nature 446, 916-920 (2007). (Pubitemid 46633167)
-
(2007)
Nature
, vol.446
, Issue.7138
, pp. 916-920
-
-
Gack, M.U.1
Shin, Y.C.2
Joo, C.-H.3
Urano, T.4
Liang, C.5
Sun, L.6
Takeuchi, O.7
Akira, S.8
Chen, Z.9
Inoue, S.10
Jung, J.U.11
-
64
-
-
24344471715
-
Estrogen-responsive finger protein as a new potential biomarker for breast cancer
-
DOI 10.1158/1078-0432.CCR-05-0040
-
Suzuki, T. et al. Estrogen-responsive finger protein as a new potential biomarker for breast cancer. Clin. Cancer Res. 11, 6148-6154 (2005). (Pubitemid 41262941)
-
(2005)
Clinical Cancer Research
, vol.11
, Issue.17
, pp. 6148-6154
-
-
Suzuki, T.1
Urano, T.2
Tsukui, T.3
Horie-Inoue, K.4
Moriya, T.5
Ishida, T.6
Muramatsu, M.7
Ouchi, Y.8
Sasano, H.9
Inoue, S.10
-
65
-
-
28044434161
-
Expression of estrogen-responsive finger protein (Efp) is associated with advanced disease in human epithelial ovarian cancer
-
DOI 10.1016/j.ygyno.2005.07.103, PII S0090825805005937
-
Sakuma, M. et al. Expression of estrogen-responsive finger protein (Efp) is associated with advanced disease in human epithelial ovarian cancer. Gynecol. Oncol. 99, 664-670 (2005). (Pubitemid 41686551)
-
(2005)
Gynecologic Oncology
, vol.99
, Issue.3
, pp. 664-670
-
-
Sakuma, M.1
Akahira, J.-I.2
Suzuki, T.3
Inoue, S.4
Ito, K.5
Moriya, T.6
Sasano, H.7
Okamura, K.8
Yaegashi, N.9
-
66
-
-
28444444897
-
Increasing 14-3-3 sigma expression with declining estrogen receptor α and estrogen-responsive finger protein expression defines malignant progression of endometrial carcinoma
-
DOI 10.1111/j.1440-1827.2005.01900.x
-
Nakayama, H., Sano, T., Motegi, A., Oyama, T. & Nakajima, T. Increasing 14-3-3 sigma expression with declining estrogen receptor alpha and estrogen-responsive finger protein expression defines malignant progression of endometrial carcinoma. Pathol. Int. 55, 707-715 (2005). (Pubitemid 41726937)
-
(2005)
Pathology International
, vol.55
, Issue.11
, pp. 707-715
-
-
Nakayama, H.1
Sano, T.2
Motegi, A.3
Oyama, T.4
Nakajima, T.5
-
67
-
-
73349108109
-
The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2
-
Rybak, A. et al. The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2. Nat. Cell Biol. 11, 1411-1420 (2009).
-
(2009)
Nat. Cell Biol
, vol.11
, pp. 1411-1420
-
-
Rybak, A.1
-
68
-
-
84859873386
-
The ubiquitin ligase mLin41 temporally promotes neural progenitor cell maintenance through FGF signaling
-
Chen, J., Lai, F. & Niswander, L. The ubiquitin ligase mLin41 temporally promotes neural progenitor cell maintenance through FGF signaling. Genes Dev. 26, 803-815 (2012).
-
(2012)
Genes Dev
, vol.26
, pp. 803-815
-
-
Chen, J.1
Lai, F.2
Niswander, L.3
-
69
-
-
58049208169
-
The let-7 microRNA target gene, Mlin41/Trim71 is required for mouse embryonic survival and neural tube closure
-
Maller Schulman, B.R., Liang, X. & Stahlhut, C. The let-7 microRNA target gene, Mlin41/Trim71 is required for mouse embryonic survival and neural tube closure. Cell Cycle 7, 3935-3942 (2008).
-
(2008)
Cell Cycle
, vol.7
, pp. 3935-3942
-
-
Maller Schulman, B.R.1
Liang, X.2
Stahlhut, C.3
-
70
-
-
0033634943
-
The lin-41 RBCC gene acts in the C. Elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor
-
Slack, F.J. et al. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol. Cell 5, 659-669 (2000).
-
(2000)
Mol. Cell
, vol.5
, pp. 659-669
-
-
Slack, F.J.1
-
71
-
-
33645461834
-
Cloning and regulation of the vertebrate homologue of lin-41 that functions as a heterochronic gene in Caenorhabditis elegans
-
Kanamoto, T., Terada, K., Yoshikawa, H. & Furukawa, T. Cloning and regulation of the vertebrate homologue of lin-41 that functions as a heterochronic gene in Caenorhabditis elegans. Dev. Dyn. 235, 1142-1149 (2006).
-
(2006)
Dev. Dyn
, vol.235
, pp. 1142-1149
-
-
Kanamoto, T.1
Terada, K.2
Yoshikawa, H.3
Furukawa, T.4
-
72
-
-
35848966558
-
Human TRIM71 and its nematode homologue are targets of let-7 microRNA and its zebrafish orthologue is essential for development
-
DOI 10.1093/molbev/msm195
-
Lin, Y.-C. et al. Human TRIM71 and its nematode homologue are targets of let-7 microRNA and its zebrafish orthologue is essential for development. Mol. Biol. Evol. 24, 2525-2534 (2007). (Pubitemid 350060457)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.11
, pp. 2525-2534
-
-
Lin, Y.-C.1
Hsieh, L.-C.2
Kuo, M.-W.3
Yu, J.4
Kuo, H.-H.5
Lo, W.-L.6
Lin, R.-J.7
Yu, A.L.8
Li, W.-H.9
-
73
-
-
78649752092
-
RNA-binding E3 ubiquitin ligases: Novel players in nucleic acid regulation
-
Cano, F., Miranda-Saavedra, D. & Lehner, P.J. RNA-binding E3 ubiquitin ligases: novel players in nucleic acid regulation. Biochem. Soc. Trans. 38, 1621-1626 (2010).
-
(2010)
Biochem. Soc. Trans
, vol.38
, pp. 1621-1626
-
-
Cano, F.1
Miranda-Saavedra, D.2
Lehner, P.J.3
-
74
-
-
21144438325
-
A RING-type ubiquitin ligase family member required to repress follicular helper T cells and autoimmunity
-
DOI 10.1038/nature03555
-
Vinuesa, C.G. et al. A RING-type ubiquitin ligase family member required to repress follicular helper T cells and autoimmunity. Nature 435, 452-458 (2005). (Pubitemid 40734237)
-
(2005)
Nature
, vol.435
, Issue.7041
, pp. 452-458
-
-
Vinuesa, C.G.1
Cook, M.C.2
Angelucci, C.3
Athanasopoulos, V.4
Rui, L.5
Hill, K.M.6
Yu, D.7
Domaschenz, H.8
Whittle, B.9
Lambe, T.10
Roberts, I.S.11
Copley, R.R.12
Bell, J.I.13
Cornall, R.J.14
Goodnow, C.C.15
-
75
-
-
36048946330
-
Roquin represses autoimmunity by limiting inducible T-cell co-stimulator messenger RNA
-
Yu, D. et al. Roquin represses autoimmunity by limiting inducible T-cell co-stimulator messenger RNA. Nature 450, 299-303 (2007).
-
(2007)
Nature
, vol.450
, pp. 299-303
-
-
Yu, D.1
-
76
-
-
77954959530
-
Roquin binds inducible costimulator mRNA and effectors of mRNA decay to induce microRNA-independent post-transcriptional repression
-
Glasmacher, E. et al. Roquin binds inducible costimulator mRNA and effectors of mRNA decay to induce microRNA-independent post-transcriptional repression. Nat. Immunol. 11, 725-733 (2010).
-
(2010)
Nat. Immunol
, vol.11
, pp. 725-733
-
-
Glasmacher, E.1
-
77
-
-
84875169786
-
System-wide identification of RNA-binding proteins by interactome capture
-
Castello, A. et al. System-wide identification of RNA-binding proteins by interactome capture. Nat. Protoc. 8, 491-500 (2013).
-
(2013)
Nat. Protoc
, vol.8
, pp. 491-500
-
-
Castello, A.1
-
78
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P.J., Raijmakers, R., Lemeer, S., Mohammed, S. & Heck, A.J.R. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4, 484-494 (2009).
-
(2009)
Nat. Protoc
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.R.5
-
79
-
-
34548183872
-
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
-
DOI 10.1038/nprot.2007.261, PII NPROT.2007.261
-
Rappsilber, J., Mann, M. & Ishihama, Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat. Protoc. 2, 1896-1906 (2007). (Pubitemid 47308128)
-
(2007)
Nature Protocols
, vol.2
, Issue.8
, pp. 1896-1906
-
-
Rappsilber, J.1
Mann, M.2
Ishihama, Y.3
-
80
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized P.P.B.-range mass accuracies and proteome-wide protein quantification
-
Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372 (2008).
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
81
-
-
79953701087
-
Andromeda: A peptide search engine integrated into the MaxQuant environment
-
Cox, J. et al. Andromeda: a peptide search engine integrated into the MaxQuant environment. J. Proteome Res. 10, 1794-1805 (2011).
-
(2011)
J. Proteome Res
, vol.10
, pp. 1794-1805
-
-
Cox, J.1
-
82
-
-
66449084442
-
Infrastructure for the life sciences: Design and implementation of the UniProt website
-
Jain, E. et al. Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10, 136 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
-
83
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004).
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
-
84
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth, G.K. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, 3 (2004).
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
85
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
DOI 10.1038/nrm2178, PII NRM2178
-
Lunde, B.M., Moore, C. & Varani, G. RNA-binding proteins: modular design for efficient function. Nat. Rev. Mol. Cell Biol. 8, 479-490 (2007). (Pubitemid 46809150)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.6
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
86
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
DOI 10.1093/bioinformatics/bti541
-
Dosztányi, Z., Csizmok, V., Tompa, P. & Simon, I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21, 3433-3434 (2005). (Pubitemid 41222453)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
87
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman, M. et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 28, 503-510 (2010).
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
-
88
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578 (2012).
-
(2012)
Nat. Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
|