Cloning and regulation of the vertebrate homologue of lin-41 that functions as a heterochronic gene in Caenorhabditis elegans

Developmental Dynamics

Volumn 235, Issue 4, 2006, Pages 1142-1149

  Kanamoto, Takashi ^a,b   Terada, Koji ^a   Yoshikawa, Hideki ^b   Furukawa, Takahisa ^a,c  

^a OSAKA BIOSCIENCE INSTITUTE   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

3 UTR; Branchial arches; let 7; Limb buds; lin 41; microRNA; NHL repeats; RBCC

Indexed keywords

GENE PRODUCT; LUCIFERASE; MICRORNA; RBCC NHL PROTEIN; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARTICLE; BIOASSAY; BRANCHIAL ARCH; CAENORHABDITIS ELEGANS; CHICKEN; DEVELOPMENT; EMBRYO; EMBRYONIC STRUCTURES; GENE; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE ISOLATION; GENETIC COMPLEMENTATION; HETEROCHRONIC GENE; LET 7 GENE; LIMB BUD; LIN 41 GENE; MOLECULAR CLONING; MOLECULAR INTERACTION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FAMILY; RNA RNA INTERACTION; SEQUENCE HOMOLOGY; TAIL BUD;

3' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; CAENORHABDITIS ELEGANS; CAENORHABDITIS ELEGANS PROTEINS; CHICK EMBRYO; CLONING, MOLECULAR; CONSENSUS SEQUENCE; DNA, COMPLEMENTARY; EMBRYO, NONMAMMALIAN; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, HELMINTH; GENES, REPORTER; HELA CELLS; HUMANS; IN SITU HYBRIDIZATION; LUCIFERASES; MICE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS; VERTEBRATES;

CAENORHABDITIS ELEGANS; VERTEBRATA;

EID: 33645461834     PISSN: 10588388     EISSN: 10970177     Source Type: Journal    
DOI: 10.1002/dvdy.20712     Document Type: Article

References (23)

1. Agata Y, Matsuda E, Shimizu A. 1998. Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc finger proteins by degenerate PCR. Gene 213:55-64.
2. Brennecke J, Stark A, Russell RB, Cohen SM. 2005. Principles of microRNA-target recognition. PLoS Biol 3:e85.
3. Du T, Zamore PD. 2005. microPrimer: the biogenesis and function of microRNA. Development 132:4645-4652.
4. Furukawa T, Kozak CA, Cepko CL. 1997. rax, a novel paired-type homeobox gene, shows expression in the anterior neural fold and developing retina. Proc Natl Acad Sci USA 94:3088-3093.
5. Hamburger V, Hamilton H. 1951. A series of normal stages in the development of the chick embryo. J Exp Morphol 88:49-92.
6. Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, Labourier E, Reinert KL, Brown D, Slack FJ. 2005. RAS is regulated by the let-7 microRNA family. Cell 120:635-647.
7. Kloosterman WP, Wienholds E, Ketting RF, Plasterk RH. 2004. Substrate requirements for let-7 function in the developing zebrafish embryo. Nucleic Acids Res 32:6284-6291.
8. Lai EC, Tam B, Rubin GM. 2005. Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs. Genes Dev 19:1067-1080.
9. Lancman JJ, Caruccio NC, Harfe BD, Pasquinelli AK, Schageman JJ, Pertsemlidis A, Fallon JF. 2005. Analysis of the regulation of lin-41 during chick and mouse limb development. Dev Dyn 234:948-960.
10. Lewis BP, Bürge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20.
11. Moss EG, Lee RC, Ambros V. 1997. The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA. Cell 88:637-646.
12. Moss EG, Tang L. 2003. Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites. Dev Biol 258:432-442.
13. Nissim S, Tabin C. 2004. Development of the limbs. In: Epstein CJ, Erickson RP, Wynshaw-Boris A, editors. Inborn errors of development. New York: Oxford University Press. p 148-167.
14. Pasquinelli AE, Ruvkun G. 2002. Control of developmental timing by micrornas and their targets. Annu Rev Cell Dev Biol 18:495-513.
15. Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Muller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, Levine M, Leahy P, Davidson E, Ruvkun G. 2000. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408:86-89.
16. Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR, Ruvkun G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403:901-906.
17. Riddle RD, Johnson RL, Laufer E, Tabin C. 1993. Sonic hedgehog mediates the polarizing activity of the ZPA. Cell 75:1401-1416.
18. Schulman BR, Esquela-Kerscher A, Slack FJ. 2005. Reciprocal expression of lin-41 and the microRNAs let-7 and mir-125 during mouse embryogenesis. Dev Dyn 234:1046-1054.
19. Seggerson K, Tang L, Moss EG. 2002. Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation. Dev Biol 243: 215-225.
20. Slack FJ, Basson M, Liu Z, Ambros V, Horvitz HR, Ruvkun G. 2000. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol Cell 5:659-669.
21. Torok M, Etkin LD. 2001. Two B or not two B? Overview of the rapidly expanding B-box family of proteins. Differentiation 67:63-71.
22. Vella MC, Choi EY, Lin SY, Reinert K, Slack FJ. 2004. The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3′UTR. Genes Dev 18:132-137.
23. Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434:338-345.