-
1
-
-
38449119773
-
Conformational motion of the ABC transporter MsbA induced by ATP hydrolysis
-
Borbat PP, Surendhran K, Bortolus M, Zou P, Freed JH, et al. (2007) Conformational motion of the ABC transporter MsbA induced by ATP hydrolysis. Plos Biology 5: 2211-2219.
-
(2007)
Plos Biology
, vol.5
, pp. 2211-2219
-
-
Borbat, P.P.1
Surendhran, K.2
Bortolus, M.3
Zou, P.4
Freed, J.H.5
-
2
-
-
77954383579
-
Ion/substrate-dependent conformational dynamics of a bacterial homolog of neurotransmitter:sodium symporters
-
Claxton DP, Quick M, Shi L, de Carvalho FD, Weinstein H, et al. (2010) Ion/substrate-dependent conformational dynamics of a bacterial homolog of neurotransmitter:sodium symporters. Nat Struct Mol Biol 17: 822-829.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 822-829
-
-
Claxton, D.P.1
Quick, M.2
Shi, L.3
de Carvalho, F.D.4
Weinstein, H.5
-
4
-
-
0037093869
-
Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme
-
Borbat PP, McHaourab HS, Freed JH, (2002) Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme. J Am Chem Soc 124: 5304-5314.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 5304-5314
-
-
Borbat, P.P.1
McHaourab, H.S.2
Freed, J.H.3
-
5
-
-
34447305495
-
Attaching a spin to a protein - site-directed spin labeling in structural biology
-
Czogalla A, Pieciul A, Jezierski A, Sikorski AF, (2007) Attaching a spin to a protein- site-directed spin labeling in structural biology. Acta Biochimica Polonica 54: 235-244.
-
(2007)
Acta Biochimica Polonica
, vol.54
, pp. 235-244
-
-
Czogalla, A.1
Pieciul, A.2
Jezierski, A.3
Sikorski, A.F.4
-
6
-
-
2942627682
-
Sensitivity enhancement in pulse EPR distance measurements
-
Jeschke G, Bender A, Paulsen H, Zimmermann H, Godt A, (2004) Sensitivity enhancement in pulse EPR distance measurements. Journal of Magnetic Resonance 169: 1-12.
-
(2004)
Journal of Magnetic Resonance
, vol.169
, pp. 1-12
-
-
Jeschke, G.1
Bender, A.2
Paulsen, H.3
Zimmermann, H.4
Godt, A.5
-
7
-
-
34147218123
-
Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance
-
Jeschke G, Polyhach Y, (2007) Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance. Physical Chemistry Chemical Physics 9: 1895-1910.
-
(2007)
Physical Chemistry Chemical Physics
, vol.9
, pp. 1895-1910
-
-
Jeschke, G.1
Polyhach, Y.2
-
8
-
-
80855144806
-
Toward the Fourth Dimension of Membrane Protein Structure: Insight into Dynamics from Spin-Labeling EPR Spectroscopy
-
McHaourab Hassane S, Steed PR, Kazmier K, (2011) Toward the Fourth Dimension of Membrane Protein Structure: Insight into Dynamics from Spin-Labeling EPR Spectroscopy. Structure 19: 1549-1561.
-
(2011)
Structure
, vol.19
, pp. 1549-1561
-
-
McHaourab Hassane, S.1
Steed, P.R.2
Kazmier, K.3
-
9
-
-
11344285129
-
The determination of pair distance distributions by pulsed ESR using Tikhonov regularization
-
Chiang Y-W, Borbat PP, Freed JH, (2005) The determination of pair distance distributions by pulsed ESR using Tikhonov regularization. Journal of Magnetic Resonance 172: 279-295.
-
(2005)
Journal of Magnetic Resonance
, vol.172
, pp. 279-295
-
-
Chiang, Y.-W.1
Borbat, P.P.2
Freed, J.H.3
-
11
-
-
36148983388
-
Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method
-
Fajer MI, Li HZ, Yang W, Fajer PG, (2007) Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method. Journal of the American Chemical Society 129: 13840-13846.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 13840-13846
-
-
Fajer, M.I.1
Li, H.Z.2
Yang, W.3
Fajer, P.G.4
-
12
-
-
0035983171
-
Structural determination of spin label immobilization and orientation: A Monte Carlo minimization approach
-
Sale K, Sar C, Sharp KA, Hideg K, Fajer PG, (2002) Structural determination of spin label immobilization and orientation: A Monte Carlo minimization approach. Journal of Magnetic Resonance 156: 104-112.
-
(2002)
Journal of Magnetic Resonance
, vol.156
, pp. 104-112
-
-
Sale, K.1
Sar, C.2
Sharp, K.A.3
Hideg, K.4
Fajer, P.G.5
-
13
-
-
21644446664
-
Explicit treatment of spin labels in modeling of distance constraints from dipolar EPR and DEER
-
Sale K, Song LK, Liu YS, Perozo E, Fajer P, (2005) Explicit treatment of spin labels in modeling of distance constraints from dipolar EPR and DEER. Journal of the American Chemical Society 127: 9334-9335.
-
(2005)
Journal of the American Chemical Society
, vol.127
, pp. 9334-9335
-
-
Sale, K.1
Song, L.K.2
Liu, Y.S.3
Perozo, E.4
Fajer, P.5
-
15
-
-
58849149026
-
Backbone Structure of Transmembrane Domain IX of the Na+/Proline Transporter PutP of Escherichia coli
-
Hilger D, Polyhach Y, Jung H, Jeschke G, (2009) Backbone Structure of Transmembrane Domain IX of the Na+/Proline Transporter PutP of Escherichia coli. Biophysical Journal 96: 217-225.
-
(2009)
Biophysical Journal
, vol.96
, pp. 217-225
-
-
Hilger, D.1
Polyhach, Y.2
Jung, H.3
Jeschke, G.4
-
16
-
-
38949171385
-
De novo high-resolution protein structure determination from sparse spin-labeling EPR data
-
Alexander N, Bortolus M, Al-Mestarihi A, Mchaourab H, Meilerl J, (2008) De novo high-resolution protein structure determination from sparse spin-labeling EPR data. Structure 16: 181-195.
-
(2008)
Structure
, vol.16
, pp. 181-195
-
-
Alexander, N.1
Bortolus, M.2
Al-Mestarihi, A.3
Mchaourab, H.4
Meilerl, J.5
-
17
-
-
79851512251
-
RosettaEPR: An integrated tool for protein structure determination from sparse EPR data
-
Hirst SJ, Alexander N, McHaourab HS, Meiler J, (2011) RosettaEPR: An integrated tool for protein structure determination from sparse EPR data. Journal of Structural Biology 173: 506-514.
-
(2011)
Journal of Structural Biology
, vol.173
, pp. 506-514
-
-
Hirst, S.J.1
Alexander, N.2
McHaourab, H.S.3
Meiler, J.4
-
19
-
-
24944493938
-
Toward high-resolution de novo structure prediction for small proteins
-
Bradley P, Misura KM, Baker D, (2005) Toward high-resolution de novo structure prediction for small proteins. Science 309: 1868-1871.
-
(2005)
Science
, vol.309
, pp. 1868-1871
-
-
Bradley, P.1
Misura, K.M.2
Baker, D.3
-
20
-
-
14644438345
-
Progress and challenges in high-resolution refinement of protein structure models
-
Misura KMS, Baker D, (2005) Progress and challenges in high-resolution refinement of protein structure models. Proteins-Structure Function and Bioinformatics 59: 15-29.
-
(2005)
Proteins-Structure Function and Bioinformatics
, vol.59
, pp. 15-29
-
-
Misura, K.M.S.1
Baker, D.2
-
21
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, et al. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science 302: 1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
-
22
-
-
0038008976
-
An improved protein decoy set for testing energy functions for protein structure prediction
-
Tsai J, Bonneau R, Morozov AV, Kuhlman B, Rohl CA, et al. (2003) An improved protein decoy set for testing energy functions for protein structure prediction. Proteins-Structure Function and Genetics 53: 76-87.
-
(2003)
Proteins-Structure Function and Genetics
, vol.53
, pp. 76-87
-
-
Tsai, J.1
Bonneau, R.2
Morozov, A.V.3
Kuhlman, B.4
Rohl, C.A.5
-
24
-
-
79959343623
-
Interaction of a G protein with an activated receptor opens the interdomain interface in the alpha subunit
-
Van Eps N, Preininger AM, Alexander N, Kaya AI, Meier S, et al. (2011) Interaction of a G protein with an activated receptor opens the interdomain interface in the alpha subunit. Proceedings of the National Academy of Sciences 108: 9420-9424.
-
(2011)
Proceedings of the National Academy of Sciences
, vol.108
, pp. 9420-9424
-
-
Van Eps, N.1
Preininger, A.M.2
Alexander, N.3
Kaya, A.I.4
Meier, S.5
-
25
-
-
79953883991
-
Membrane Protein Structure Determination using Paramagnetic Tags
-
Ganguly S, Weiner Brian E, Meiler J, (2011) Membrane Protein Structure Determination using Paramagnetic Tags. Structure (London, England: 1993) 19: 441-443.
-
(2011)
Structure (London, England: 1993)
, vol.19
, pp. 441-443
-
-
Ganguly, S.1
Weiner Brian, E.2
Meiler, J.3
-
26
-
-
65649117362
-
Structural origin of weakly ordered nitroxide motion in spin-labeled proteins
-
Fleissner MR, Cascio D, Hubbell WL, (2009) Structural origin of weakly ordered nitroxide motion in spin-labeled proteins. Protein Science 18: 893-908.
-
(2009)
Protein Science
, vol.18
, pp. 893-908
-
-
Fleissner, M.R.1
Cascio, D.2
Hubbell, W.L.3
-
27
-
-
38649125853
-
Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme
-
Guo ZF, Cascio D, Hideg K, Hubbell WL, (2008) Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme. Protein Science 17: 228-239.
-
(2008)
Protein Science
, vol.17
, pp. 228-239
-
-
Guo, Z.F.1
Cascio, D.2
Hideg, K.3
Hubbell, W.L.4
-
28
-
-
34249794011
-
Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme
-
Guo ZF, Cascio D, Hideg K, Kalai T, Hubbell WL, (2007) Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme. Protein Science 16: 1069-1086.
-
(2007)
Protein Science
, vol.16
, pp. 1069-1086
-
-
Guo, Z.F.1
Cascio, D.2
Hideg, K.3
Kalai, T.4
Hubbell, W.L.5
-
29
-
-
0039171268
-
Crystal structures of spin labeled T4 lysozyme mutants: Implications for the interpretation of EPR spectra in terms of structure
-
Langen R, Oh KJ, Cascio D, Hubbell WL, (2000) Crystal structures of spin labeled T4 lysozyme mutants: Implications for the interpretation of EPR spectra in terms of structure. Biochemistry 39: 8396-8405.
-
(2000)
Biochemistry
, vol.39
, pp. 8396-8405
-
-
Langen, R.1
Oh, K.J.2
Cascio, D.3
Hubbell, W.L.4
-
30
-
-
78649504797
-
Structural Origins of Nitroxide Side Chain Dynamics on Membrane Protein α-Helical Sites
-
Kroncke BM, Horanyi PS, Columbus L, (2010) Structural Origins of Nitroxide Side Chain Dynamics on Membrane Protein α-Helical Sites. Biochemistry 49: 10045-10060.
-
(2010)
Biochemistry
, vol.49
, pp. 10045-10060
-
-
Kroncke, B.M.1
Horanyi, P.S.2
Columbus, L.3
-
31
-
-
0034663722
-
The penultimate rotamer library
-
Lovell SC, Word JM, Richardson JS, Richardson DC, (2000) The penultimate rotamer library. Proteins-Structure Function and Genetics 40: 389-408.
-
(2000)
Proteins-Structure Function and Genetics
, vol.40
, pp. 389-408
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
33
-
-
79851516036
-
Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination
-
Kazmier K, Alexander NS, Meiler J, McHaourab HS, (2011) Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination. Journal of Structural Biology 173: 549-557.
-
(2011)
Journal of Structural Biology
, vol.173
, pp. 549-557
-
-
Kazmier, K.1
Alexander, N.S.2
Meiler, J.3
McHaourab, H.S.4
-
34
-
-
70349785109
-
Conformational Cycle of the ABC Transporter MsbA in Liposomes: Detailed Analysis Using Double Electron-Electron Resonance Spectroscopy
-
Zou P, Bortolus M, Mchaourab HS, (2009) Conformational Cycle of the ABC Transporter MsbA in Liposomes: Detailed Analysis Using Double Electron-Electron Resonance Spectroscopy. Journal of Molecular Biology 393: 586-597.
-
(2009)
Journal of Molecular Biology
, vol.393
, pp. 586-597
-
-
Zou, P.1
Bortolus, M.2
Mchaourab, H.S.3
-
35
-
-
36049029967
-
High-resolution structure prediction and the crystallographic phase problem
-
Qian B, Raman S, Das R, Bradley P, McCoy AJ, et al. (2007) High-resolution structure prediction and the crystallographic phase problem. Nature 450: 259-264.
-
(2007)
Nature
, vol.450
, pp. 259-264
-
-
Qian, B.1
Raman, S.2
Das, R.3
Bradley, P.4
McCoy, A.J.5
-
36
-
-
77149179401
-
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
-
Raman S, Lange OF, Rossi P, Tyka M, Wang X, et al. (2010) NMR Structure Determination for Larger Proteins Using Backbone-Only Data. Science 327: 1014-1018.
-
(2010)
Science
, vol.327
, pp. 1014-1018
-
-
Raman, S.1
Lange, O.F.2
Rossi, P.3
Tyka, M.4
Wang, X.5
-
37
-
-
47849085074
-
Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus
-
Nakamura T, Mine S, Hagihara Y, Ishikawa K, Ikegami T, et al. (2008) Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus. Journal of Molecular Biology 381: 670-680.
-
(2008)
Journal of Molecular Biology
, vol.381
, pp. 670-680
-
-
Nakamura, T.1
Mine, S.2
Hagihara, Y.3
Ishikawa, K.4
Ikegami, T.5
-
38
-
-
79958079887
-
A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions
-
Shapovalov Maxim V, Dunbrack Roland L, (2011) A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions. Structure (London, England: 1993) 19: 844-858.
-
(2011)
Structure (London, England: 1993)
, vol.19
, pp. 844-858
-
-
Shapovalov Maxim, V.1
Dunbrack Roland, L.2
-
39
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov GG, Shapovalov MV, Dunbrack RL, (2009) Improved prediction of protein side-chain conformations with SCWRL4. Proteins: Structure, Function, and Bioinformatics 77: 778-795.
-
(2009)
Proteins: Structure, Function, and Bioinformatics
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack, R.L.3
-
40
-
-
17744364070
-
Improved side-chain modeling for protein-protein docking
-
Wang C, Schueler-Furman O, Baker D, (2005) Improved side-chain modeling for protein-protein docking. Protein Science 14: 1328-1339.
-
(2005)
Protein Science
, vol.14
, pp. 1328-1339
-
-
Wang, C.1
Schueler-Furman, O.2
Baker, D.3
-
41
-
-
84857917265
-
MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL
-
Hagelueken G, Ward R, Naismith JH, Schiemann O, (2012) MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL. Applied Magnetic Resonance 42: 377-391.
-
(2012)
Applied Magnetic Resonance
, vol.42
, pp. 377-391
-
-
Hagelueken, G.1
Ward, R.2
Naismith, J.H.3
Schiemann, O.4
-
42
-
-
0342645331
-
-
Sherbooke St. West, Suite #910, Montreal, QC, Canada, H3A 2R7: Chemical Computing Group Inc
-
(2012) MOE (Molecular Operating Environment). Sherbooke St. West, Suite #910, Montreal, QC, Canada, H3A 2R7: Chemical Computing Group Inc.
-
(2012)
MOE (Molecular Operating Environment)
-
-
-
44
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Research 28: 235-242.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
45
-
-
0023104358
-
Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution
-
Weaver LH, Matthews BW, (1987) Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution. J Mol Biol 193: 189-199.
-
(1987)
J Mol Biol
, vol.193
, pp. 189-199
-
-
Weaver, L.H.1
Matthews, B.W.2
-
46
-
-
0024564552
-
CONTROL OF ENZYME-ACTIVITY BY AN ENGINEERED DISULFIDE BOND
-
Matsumura M, Matthews BW, (1989) CONTROL OF ENZYME-ACTIVITY BY AN ENGINEERED DISULFIDE BOND. Science 243: 792-794.
-
(1989)
Science
, vol.243
, pp. 792-794
-
-
Matsumura, M.1
Matthews, B.W.2
-
47
-
-
37649004412
-
Flexibility in the ABC transporter MsbA: Alternating access with a twist
-
Ward A, Reyes CL, Yu J, Roth CB, Chang G, (2007) Flexibility in the ABC transporter MsbA: Alternating access with a twist. Proc Natl Acad Sci U S A 104: 19005-19010.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 19005-19010
-
-
Ward, A.1
Reyes, C.L.2
Yu, J.3
Roth, C.B.4
Chang, G.5
-
48
-
-
0037991538
-
Improving similarity measures of histograms using smoothing projections
-
Kamarainen JK, Kyrki V, Ilonen J, Kalviainen H, (2003) Improving similarity measures of histograms using smoothing projections. Pattern Recognition Letters 24: 2009-2019.
-
(2003)
Pattern Recognition Letters
, vol.24
, pp. 2009-2019
-
-
Kamarainen, J.K.1
Kyrki, V.2
Ilonen, J.3
Kalviainen, H.4
-
49
-
-
67849109995
-
Solvent accessible surface area approximations for rapid and accurate protein structure prediction
-
Durham E, Dorr B, Woetzel N, Staritzbichler R, Meiler J, (2009) Solvent accessible surface area approximations for rapid and accurate protein structure prediction. Journal of Molecular Modeling 15: 1093-1108.
-
(2009)
Journal of Molecular Modeling
, vol.15
, pp. 1093-1108
-
-
Durham, E.1
Dorr, B.2
Woetzel, N.3
Staritzbichler, R.4
Meiler, J.5
-
50
-
-
0043180474
-
PISCES: a protein sequence culling server
-
Wang G, Dunbrack RL Jr, (2003) PISCES: a protein sequence culling server. Bioinformatics 19: 1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack Jr., R.L.2
|