-
1
-
-
0000975897
-
A genetic locus for the regulation of ribonucleic acid synthesis
-
Stent GS, Brenner S (1961) A genetic locus for the regulation of ribonucleic acid synthesis. Proc Natl Acad Sci USA 47: 2005-2014
-
(1961)
Proc Natl Acad Sci USA
, vol.47
, pp. 2005-2014
-
-
Stent, G.S.1
Brenner, S.2
-
3
-
-
42149158392
-
Control of bacterial transcription, translation and replication by (p)ppGpp
-
Srivatsan A, Wang JD (2008) Control of bacterial transcription, translation and replication by (p)ppGpp. Curr Opin Microbiol 11: 100-105
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 100-105
-
-
Srivatsan, A.1
Wang, J.D.2
-
4
-
-
77958102894
-
The stringent response is required for full virulence of Mycobacterium tuberculosis in guinea pigs
-
Klinkenberg LG, Lee JH, Bishai WR, Karakousis PC (2010) The stringent response is required for full virulence of Mycobacterium tuberculosis in guinea pigs. J Infect Dis 202: 1397-1404
-
(2010)
J Infect Dis
, vol.202
, pp. 1397-1404
-
-
Klinkenberg, L.G.1
Lee, J.H.2
Bishai, W.R.3
Karakousis, P.C.4
-
5
-
-
84864004962
-
Stringent response regulation of biofilm formation in Vibrio cholerae
-
He H, Cooper JN, Mishra A, Raskin DM (2012) Stringent response regulation of biofilm formation in Vibrio cholerae. J Bacteriol 194: 2962-2972
-
(2012)
J Bacteriol
, vol.194
, pp. 2962-2972
-
-
He, H.1
Cooper, J.N.2
Mishra, A.3
Raskin, D.M.4
-
6
-
-
79961217635
-
The RelA/SpoT homolog (RSH) superfamily: Distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life
-
Atkinson GC, Tenson T, Hauryliuk V (2011) The RelA/SpoT homolog (RSH) superfamily: Distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life. PLoS One 6: E23479
-
(2011)
PLoS One
, vol.6
-
-
Atkinson, G.C.1
Tenson, T.2
Hauryliuk, V.3
-
7
-
-
30344476728
-
New horizons for (p)ppGpp in bacterial and plant physiology
-
Braeken K, Moris M, Daniels R, Vanderleyden J, Michiels J (2006) New horizons for (p)ppGpp in bacterial and plant physiology. Trends Microbiol 14: 45-54
-
(2006)
Trends Microbiol
, vol.14
, pp. 45-54
-
-
Braeken, K.1
Moris, M.2
Daniels, R.3
Vanderleyden, J.4
Michiels, J.5
-
8
-
-
77957823929
-
A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses
-
Sun D, et al (2010) A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses. Nat Struct Mol Biol 17: 1188-1194
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1188-1194
-
-
Sun, D.1
-
9
-
-
0015515019
-
MSI and MSII made on ribosome in idling step of protein synthesis
-
Haseltine WA, Block R, Gilbert W, Weber K (1972) MSI and MSII made on ribosome in idling step of protein synthesis. Nature 238: 381-384
-
(1972)
Nature
, vol.238
, pp. 381-384
-
-
Haseltine, W.A.1
Block, R.2
Gilbert, W.3
Weber, K.4
-
10
-
-
0007825206
-
Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes
-
Haseltine WA, Block R (1973) Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes. Proc Natl Acad Sci USA 70: 1564-1568
-
(1973)
Proc Natl Acad Sci USA
, vol.70
, pp. 1564-1568
-
-
Haseltine, W.A.1
Block, R.2
-
11
-
-
0017821933
-
Role of the aminoacyl end of transfer RNA in the allosteric control of guanosine pentaphosphate synthesis by the stringent factor-ribosome complex of Escherichia coli
-
Chinali G, Liou R, Ofengand J (1978) Role of the aminoacyl end of transfer RNA in the allosteric control of guanosine pentaphosphate synthesis by the stringent factor-ribosome complex of Escherichia coli. Biochemistry 17: 2761-2768
-
(1978)
Biochemistry
, vol.17
, pp. 2761-2768
-
-
Chinali, G.1
Liou, R.2
Ofengand, J.3
-
12
-
-
0017040661
-
Free 3′-OH group of the terminal adenosine of the tRNA molecule is essential for the synthesis in vitro of guanosine tetraphosphate and pentaphosphate in a ribosomal system from Escherichia coli
-
Sprinzl M, Richter D (1976) Free 3′-OH group of the terminal adenosine of the tRNA molecule is essential for the synthesis in vitro of guanosine tetraphosphate and pentaphosphate in a ribosomal system from Escherichia coli. Eur J Biochem 71: 171-176
-
(1976)
Eur J Biochem
, vol.71
, pp. 171-176
-
-
Sprinzl, M.1
Richter, D.2
-
13
-
-
0036809217
-
Dissection of the mechanism for the stringent factor RelA
-
Wendrich TM, Blaha G, Wilson DN, Marahiel MA, Nierhaus KH (2002) Dissection of the mechanism for the stringent factor RelA. Mol Cell 10: 779-788
-
(2002)
Mol Cell
, vol.10
, pp. 779-788
-
-
Wendrich, T.M.1
Blaha, G.2
Wilson, D.N.3
Marahiel, M.A.4
Nierhaus, K.H.5
-
14
-
-
0017403108
-
Analysis of the relA gene product of Escherichia coli
-
Pedersen FS, Kjeldgaard NO (1977) Analysis of the relA gene product of Escherichia coli. Eur J Biochem 76: 91-97
-
(1977)
Eur J Biochem
, vol.76
, pp. 91-97
-
-
Pedersen, F.S.1
Kjeldgaard, N.O.2
-
15
-
-
0035150018
-
Regulation of Escherichia coli RelA requires oligomerization of the C-terminal domain
-
Gropp M, Strausz Y, Gross M, Glaser G (2001) Regulation of Escherichia coli RelA requires oligomerization of the C-terminal domain. J Bacteriol 183: 570-579
-
(2001)
J Bacteriol
, vol.183
, pp. 570-579
-
-
Gropp, M.1
Strausz, Y.2
Gross, M.3
Glaser, G.4
-
16
-
-
0035688236
-
Dimerization of the RelA protein of Escherichia coli
-
Yang X, Ishiguro EE (2001) Dimerization of the RelA protein of Escherichia coli. Biochem Cell Biol 79: 729-736
-
(2001)
Biochem Cell Biol
, vol.79
, pp. 729-736
-
-
Yang, X.1
Ishiguro, E.E.2
-
17
-
-
0025857678
-
Overexpression of the relA gene in Escherichia coli
-
Schreiber G, Metzger S, Aizenman E, Roza S, Cashel M, Glaser G (1991) Overexpression of the relA gene in Escherichia coli. J Biol Chem 266: 3760-3767
-
(1991)
J Biol Chem
, vol.266
, pp. 3760-3767
-
-
Schreiber, G.1
Metzger, S.2
Aizenman, E.3
Roza, S.4
Cashel, M.5
Glaser, G.6
-
18
-
-
33845939047
-
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
-
Scheres SH, Gao H, Valle M, Herman GT, Eggermont PP, Frank J, Carazo JM (2007) Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization. Nat Methods 4: 27-29
-
(2007)
Nat Methods
, vol.4
, pp. 27-29
-
-
Scheres, S.H.1
Gao, H.2
Valle, M.3
Herman, G.T.4
Eggermont, P.P.5
Frank, J.6
Carazo, J.M.7
-
20
-
-
0242407184
-
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy
-
Valle M, et al (2003) Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat Struct Biol 10: 899-906
-
(2003)
Nat Struct Biol
, vol.10
, pp. 899-906
-
-
Valle, M.1
-
21
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
Schmeing TM, Voorhees RM, Kelley AC, Gao YG, Murphy FVt, Weir JR, Ramakrishnan V (2009) The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science 326: 688-694
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Gao, Y.G.4
Murphy, F.V.T.5
Weir, J.R.6
Ramakrishnan, V.7
-
22
-
-
77952717308
-
Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
-
Whitford PC, Geggier P, Altman RB, Blanchard SC, Onuchic JN, Sanbonmatsu KY (2010) Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways. RNA 16: 1196-1204
-
(2010)
RNA
, vol.16
, pp. 1196-1204
-
-
Whitford, P.C.1
Geggier, P.2
Altman, R.B.3
Blanchard, S.C.4
Onuchic, J.N.5
Sanbonmatsu, K.Y.6
-
23
-
-
0031587290
-
An A to U transversion at position 1067 of 23S rRNA from Escherichia coli impairs EF-Tu and EF-G function
-
Saarma U, Remme J, Ehrenberg M, Bilgin N (1997) An A to U transversion at position 1067 of 23S rRNA from Escherichia coli impairs EF-Tu and EF-G function. J Mol Biol 272: 327-335
-
(1997)
J Mol Biol
, vol.272
, pp. 327-335
-
-
Saarma, U.1
Remme, J.2
Ehrenberg, M.3
Bilgin, N.4
-
24
-
-
0016290842
-
Reversibility of the pyrophosphoryl transfer from ATP to GTP by Escherichia coli stringent factor
-
Sy J (1974) Reversibility of the pyrophosphoryl transfer from ATP to GTP by Escherichia coli stringent factor. Proc Natl Acad Sci USA 71: 3470-3473
-
(1974)
Proc Natl Acad Sci USA
, vol.71
, pp. 3470-3473
-
-
Sy, J.1
-
25
-
-
0018217453
-
Thiostrepton-resistant mutants exhibit relaxed synthesis of RNA
-
Smith I, Paress P, Pestka S (1978) Thiostrepton-resistant mutants exhibit relaxed synthesis of RNA. Proc Natl Acad Sci USA 75: 5993-5997
-
(1978)
Proc Natl Acad Sci USA
, vol.75
, pp. 5993-5997
-
-
Smith, I.1
Paress, P.2
Pestka, S.3
-
26
-
-
0028355760
-
The antibiotics micrococcin and thiostrepton interact directly with 23S rRNA nucleotides 1067A and 1095A
-
Rosendahl G, Douthwaite S (1994) The antibiotics micrococcin and thiostrepton interact directly with 23S rRNA nucleotides 1067A and 1095A. Nucleic Acids Res 22: 357-363
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 357-363
-
-
Rosendahl, G.1
Douthwaite, S.2
-
27
-
-
79961224232
-
Single-molecule investigations of the stringent response machinery in living bacterial cells
-
English BP, Hauryliuk V, Sanamrad A, Tankov S, Dekker NH, Elf J (2011) Single-molecule investigations of the stringent response machinery in living bacterial cells. Proc Natl Acad Sci USA 108: E365-E373
-
(2011)
Proc Natl Acad Sci USA
, vol.108
-
-
English, B.P.1
Hauryliuk, V.2
Sanamrad, A.3
Tankov, S.4
Dekker, N.H.5
Elf, J.6
-
28
-
-
0034751687
-
Involvement of the N terminus of ribosomal protein L11 in regulation of the RelA protein of Escherichia coli
-
Yang X, Ishiguro EE (2001) Involvement of the N terminus of ribosomal protein L11 in regulation of the RelA protein of Escherichia coli. J Bacteriol 183: 6532-6537
-
(2001)
J Bacteriol
, vol.183
, pp. 6532-6537
-
-
Yang, X.1
Ishiguro, E.E.2
-
29
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer M, Dunham CM, Murphy FVt, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V (2006) Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313: 1935-1942
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.T.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
30
-
-
0029983371
-
T7 vectors with modified T7lac promoter for expression of proteins in Escherichia coli
-
Peranen J, Rikkonen M, Hyvonen M, Kaariainen L (1996) T7 vectors with modified T7lac promoter for expression of proteins in Escherichia coli. Anal Biochem 236: 371-373
-
(1996)
Anal Biochem
, vol.236
, pp. 371-373
-
-
Peranen, J.1
Rikkonen, M.2
Hyvonen, M.3
Kaariainen, L.4
-
31
-
-
0347985836
-
Fast automatic particle picking from cryoelectron micrographs using a locally normalized cross-correlation function: A case study
-
Rath BK, Frank J (2004) Fast automatic particle picking from cryoelectron micrographs using a locally normalized cross-correlation function: A case study. J Struct Biol 145: 84-90
-
(2004)
J Struct Biol
, vol.145
, pp. 84-90
-
-
Rath, B.K.1
Frank, J.2
-
32
-
-
51549085335
-
Particleverification for single-particle, reference-based reconstruction using multivariate data analysis and classification
-
Shaikh TR, Trujillo R, LeBarron JS, Baxter WT, Frank J (2008) Particleverification for single-particle, reference-based reconstruction using multivariate data analysis and classification. J Struct Biol 164: 41-48
-
(2008)
J Struct Biol
, vol.164
, pp. 41-48
-
-
Shaikh, T.R.1
Trujillo, R.2
LeBarron, J.S.3
Baxter, W.T.4
Frank, J.5
-
33
-
-
58049204808
-
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
-
Shaikh TR, Gao H, Baxter WT, Asturias FJ, Boisset N, Leith A, Frank J (2008) SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 3: 1941-1974
-
(2008)
Nat Protoc
, vol.3
, pp. 1941-1974
-
-
Shaikh, T.R.1
Gao, H.2
Baxter, W.T.3
Asturias, F.J.4
Boisset, N.5
Leith, A.6
Frank, J.7
-
34
-
-
33644847296
-
Estimation of variance in single-particle reconstruction using the bootstrap technique
-
Penczek PA, Yang C, Frank J, Spahn CM (2006) Estimation of variance in single-particle reconstruction using the bootstrap technique. J Struct Biol 154: 168-183
-
(2006)
J Struct Biol
, vol.154
, pp. 168-183
-
-
Penczek, P.A.1
Yang, C.2
Frank, J.3
Spahn, C.M.4
-
35
-
-
79955020725
-
Structural insights into cognate versus near-cognate discrimination during decoding
-
Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J (2011) Structural insights into cognate versus near-cognate discrimination during decoding. EMBO J 30: 1497-1507
-
(2011)
EMBO J
, vol.30
, pp. 1497-1507
-
-
Agirrezabala, X.1
Schreiner, E.2
Trabuco, L.G.3
Lei, J.4
Ortiz-Meoz, R.F.5
Schulten, K.6
Green, R.7
Frank, J.8
-
36
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K (2008) Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16: 673-683
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
37
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera-A visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
38
-
-
66149157000
-
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
-
Voorhees RM, Weixlbaumer A, Loakes D, Kelley AC, Ramakrishnan V (2009) Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome. Nat Struct Mol Biol 16: 528-533
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 528-533
-
-
Voorhees, R.M.1
Weixlbaumer, A.2
Loakes, D.3
Kelley, A.C.4
Ramakrishnan, V.5
|