메뉴 건너뛰기




Volumn 10, Issue 9, 2013, Pages 910-916

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; NUCLEOPROTEIN;

EID: 84883462391     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2599     Document Type: Article
Times cited : (187)

References (32)
  • 1
    • 33947517676 scopus 로고    scopus 로고
    • A survey of single-molecule techniques in chemical biology
    • Cornish, P.V. & Ha, T. A survey of single-molecule techniques in chemical biology. ACS Chem. Biol. 2, 53-61 (2007).
    • (2007) ACS Chem. Biol. , vol.2 , pp. 53-61
    • Cornish, P.V.1    Ha, T.2
  • 2
    • 34547878369 scopus 로고    scopus 로고
    • New directions in single-molecule imaging and analysis
    • Moerner, W.E. New directions in single-molecule imaging and analysis. Proc. Natl. Acad. Sci. USA 104, 12596-12602 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 12596-12602
    • Moerner, W.E.1
  • 3
    • 44449087047 scopus 로고    scopus 로고
    • Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
    • Neuman, K.C. & Nagy, A. Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy. Nat. Methods 5, 491-505 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 491-505
    • Neuman, K.C.1    Nagy, A.2
  • 4
    • 50649121477 scopus 로고    scopus 로고
    • Advances in single-molecule fluorescence methods for molecular biology
    • Joo, C., Balci, H., Ishitsuka, Y., Buranachai, C. & Ha, T. Advances in single-molecule fluorescence methods for molecular biology. Annu. Rev. Biochem. 77, 51-76 (2008).
    • (2008) Annu. Rev. Biochem. , vol.77 , pp. 51-76
    • Joo, C.1    Balci, H.2    Ishitsuka, Y.3    Buranachai, C.4    Ha, T.5
  • 5
    • 79953873168 scopus 로고    scopus 로고
    • Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions
    • Candelli, A., Wuite, G.J.L. & Peterman, E.J.G. Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions. Phys. Chem. Chem. Phys. 13, 7263-7272 (2011).
    • (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 7263-7272
    • Candelli, A.1    Wuite, G.J.L.2    Peterman, E.J.G.3
  • 7
    • 0033021362 scopus 로고    scopus 로고
    • Single-molecule imaging of RNA polymerase-DNA interactions in real time
    • Harada, Y. et al. Single-molecule imaging of RNA polymerase-DNA interactions in real time. Biophys. J. 76, 709-715 (1999).
    • (1999) Biophys. J. , vol.76 , pp. 709-715
    • Harada, Y.1
  • 8
    • 59649116344 scopus 로고    scopus 로고
    • Counting RAD51 proteins disassembling from nucleoprotein filaments under tension
    • van Mameren, J. et al. Counting RAD51 proteins disassembling from nucleoprotein filaments under tension. Nature 457, 745-748 (2009).
    • (2009) Nature , vol.457 , pp. 745-748
    • Van Mameren, J.1
  • 9
    • 17444366080 scopus 로고    scopus 로고
    • Simultaneous coincident optical trapping and single-molecule fluorescence
    • Lang, M.J., Fordyce, P.M., Engh, A.M., Neuman, K.C. & Block, S.M. Simultaneous, coincident optical trapping and single-molecule fluorescence. Nat. Methods 1, 133-139 (2004).
    • (2004) Nat. Methods , vol.1 , pp. 133-139
    • Lang, M.J.1    Fordyce, P.M.2    Engh, A.M.3    Neuman, K.C.4    Block, S.M.5
  • 10
    • 35348897239 scopus 로고    scopus 로고
    • Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction
    • Hohng, S. et al. Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction. Science 318, 279-283 (2007).
    • (2007) Science , vol.318 , pp. 279-283
    • Hohng, S.1
  • 11
    • 79953292607 scopus 로고    scopus 로고
    • Ultrahigh-resolution optical trap with single-fluorophore sensitivity
    • Comstock, M.J., Ha, T. & Chemla, Y.R. Ultrahigh-resolution optical trap with single-fluorophore sensitivity. Nat. Methods 8, 335-340 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 335-340
    • Comstock, M.J.1    Ha, T.2    Chemla, Y.R.3
  • 12
    • 58149236663 scopus 로고    scopus 로고
    • Microscopy and its focal switch
    • Hell, S.W. Microscopy and its focal switch. Nat. Methods 6, 24-32 (2009).
    • (2009) Nat. Methods , vol.6 , pp. 24-32
    • Hell, S.W.1
  • 13
    • 0034682512 scopus 로고    scopus 로고
    • Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission
    • Klar, T.A., Jakobs, S., Dyba, M., Egner, A. & Hell, S.W. Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission. Proc. Natl. Acad. Sci. USA 97, 8206-8210 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 8206-8210
    • Klar, T.A.1    Jakobs, S.2    Dyba, M.3    Egner, A.4    Hell, S.W.5
  • 14
    • 33746806381 scopus 로고    scopus 로고
    • Macromolecular-scale resolution in biological fluores¬cence microscopy
    • Donnert, G. et al. Macromolecular-scale resolution in biological fluores¬cence microscopy. Proc. Natl. Acad. Sci. USA 103, 11440-11445 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 11440-11445
    • Donnert, G.1
  • 15
    • 75249105436 scopus 로고    scopus 로고
    • Fast STED microscopy with continuous wave fiber lasers
    • Moneron, G. et al. Fast STED microscopy with continuous wave fiber lasers. Opt. Express 18, 1302-1309 (2010).
    • (2010) Opt. Express , vol.18 , pp. 1302-1309
    • Moneron, G.1
  • 16
    • 77954262136 scopus 로고    scopus 로고
    • Single-molecule STED microscopy with photostable organic fluorophores
    • Kasper, R. et al. Single-molecule STED microscopy with photostable organic fluorophores. Small 6, 1379-1384 (2010).
    • (2010) Small , vol.6 , pp. 1379-1384
    • Kasper, R.1
  • 17
    • 36749025645 scopus 로고    scopus 로고
    • Visualizing single DNA-bound proteins using DNA as a scanning probe
    • Noom, M.C., van den Broek, B., van Mameren, J. & Wuite, G.J.L. Visualizing single DNA-bound proteins using DNA as a scanning probe. Nat. Methods 4, 1031-1036 (2007).
    • (2007) Nat. Methods , vol.4 , pp. 1031-1036
    • Noom, M.C.1    Van Den Broek, B.2    Van Mameren, J.3    Wuite, G.J.L.4
  • 18
    • 0002374601 scopus 로고    scopus 로고
    • Interference model for back-focal-plane displacement detection in optical tweezers
    • Gittes, F. & Schmidt, C.F. Interference model for back-focal-plane displacement detection in optical tweezers. Opt. Lett. 23, 7-9 (1998).
    • (1998) Opt. Lett. , vol.23 , pp. 7-9
    • Gittes, F.1    Schmidt, C.F.2
  • 19
    • 33745162550 scopus 로고    scopus 로고
    • Differential detection of dual traps improves the spatial resolution of optical tweezers
    • Moffitt, J.R., Chemla, Y.R., Izhaky, D. & Bustamante, C. Differential detection of dual traps improves the spatial resolution of optical tweezers. Proc. Natl. Acad. Sci. USA 103, 9006-9011 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 9006-9011
    • Moffitt, J.R.1    Chemla, Y.R.2    Izhaky, D.3    Bustamante, C.4
  • 20
    • 0035679307 scopus 로고    scopus 로고
    • Breaking Abbe's diffraction resolution limit in fluorescence microscopy with stimulated emission depletion beams of various shapes
    • Klar, T.A., Engel, E. & Hell, S. Breaking Abbe's diffraction resolution limit in fluorescence microscopy with stimulated emission depletion beams of various shapes. Phys. Rev. E 64, 066613 (2001).
    • (2001) Phys. Rev. , vol.E64 , pp. 066613
    • Klar, T.A.1    Engel, E.2    Hell, S.3
  • 21
    • 2642522184 scopus 로고    scopus 로고
    • Combining optical trapping and single-molecule fluorescence spectroscopy: Enhanced photobleaching of fluorophores
    • van Dijk, M.A., Kapitein, L.C., van Mameren, J., Schmidt, C.F. & Peterman, E.J.G. Combining optical trapping and single-molecule fluorescence spectroscopy: Enhanced photobleaching of fluorophores. J. Phys. Chem. B 108, 6479-6484 (2004).
    • (2004) J. Phys. Chem. , vol.B108 , pp. 6479-6484
    • Van Dijk, M.A.1    Kapitein, L.C.2    Van Mameren, J.3    Schmidt, C.F.4    Peterman, E.J.G.5
  • 22
    • 77954586689 scopus 로고    scopus 로고
    • Combining optical tweezers, single-molecule fluorescence microscopy, and microfluidics for studies of DNA-protein interactions
    • Gross, P., Farge, G., Peterman, E.J.G. & Wuite, G.J.L. Combining optical tweezers, single-molecule fluorescence microscopy, and microfluidics for studies of DNA-protein interactions. Methods Enzymol. 475, 427-453 (2010).
    • (2010) Methods Enzymol. , vol.475 , pp. 427-453
    • Gross, P.1    Farge, G.2    Peterman, E.J.G.3    Wuite, G.J.L.4
  • 23
    • 33645839858 scopus 로고    scopus 로고
    • STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis
    • Willig, K.I., Rizzoli, S.O., Westphal, V., Jahn, R. & Hell, S.W. STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis. Nature 440, 935-939 (2006).
    • (2006) Nature , vol.440 , pp. 935-939
    • Willig, K.I.1    Rizzoli, S.O.2    Westphal, V.3    Jahn, R.4    Hell, S.W.5
  • 24
    • 0031237993 scopus 로고    scopus 로고
    • Room-temperature fluorescence imaging and spectroscopy of single molecules by two-photon excitation
    • Sánchez, E.J., Novotny, L., Holtom, G.R. & Xie, X.S. Room-temperature fluorescence imaging and spectroscopy of single molecules by two-photon excitation. J. Phys. Chem. A 101, 7019-7023 (1997).
    • (1997) J. Phys. Chem. , vol.A101 , pp. 7019-7023
    • Sánchez, E.J.1    Novotny, L.2    Holtom, G.R.3    Xie, X.S.4
  • 25
    • 0036231415 scopus 로고    scopus 로고
    • Precise nanometer localization analysis for individual fluorescent probes
    • Thompson, R.E., Larson, D.R. & Webb, W.W. Precise nanometer localization analysis for individual fluorescent probes. Biophys. J. 82, 2775-2783 (2002).
    • (2002) Biophys. J. , vol.82 , pp. 2775-2783
    • Thompson, R.E.1    Larson, D.R.2    Webb, W.W.3
  • 26
    • 79958051804 scopus 로고    scopus 로고
    • Fluorescence nanoscopy of single DNA molecules by using stimulated emission depletion (STED)
    • Persson, F. et al. Fluorescence nanoscopy of single DNA molecules by using stimulated emission depletion (STED). Angew. Chem. Int. Ed. Engl. 50, 5581-5583 (2011).
    • (2011) Angew. Chem. Int. Ed. Engl. , vol.50 , pp. 5581-5583
    • Persson, F.1
  • 27
    • 80555128721 scopus 로고    scopus 로고
    • The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA
    • Ngo, H.B., Kaiser, J.T. & Chan, D.C. The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA. Nat. Struct. Mol. Biol. 18, 1290-1296 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1290-1296
    • Ngo, H.B.1    Kaiser, J.T.2    Chan, D.C.3
  • 28
    • 80555122761 scopus 로고    scopus 로고
    • Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter
    • Rubio-Cosials, A. et al. Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter. Nat. Struct. Mol. Biol. 18, 1281-1289 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1281-1289
    • Rubio-Cosials, A.1
  • 29
    • 84866082674 scopus 로고    scopus 로고
    • Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A
    • Farge, G. et al. Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A. Nat. Commun. 3, 1013 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 1013
    • Farge, G.1
  • 31
    • 47249153641 scopus 로고    scopus 로고
    • Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
    • Bonnet, I. et al. Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA. Nucleic Acids Res. 36, 4118-4127 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 4118-4127
    • Bonnet, I.1
  • 32
    • 79951608526 scopus 로고    scopus 로고
    • Simultaneous multi-lifetime multi-color STED imaging for colocalization analyses
    • Bückers, J., Wildanger, D., Vicidomini, G., Kastrup, L. & Hell, S.W. Simultaneous multi-lifetime multi-color STED imaging for colocalization analyses. Opt. Express 19, 3130-3143 (2011).
    • (2011) Opt. Express , vol.19 , pp. 3130-3143
    • Bückers, J.1    Wildanger, D.2    Vicidomini, G.3    Kastrup, L.4    Hell, S.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.