메뉴 건너뛰기




Volumn 1007, Issue , 2013, Pages 183-217

Methods and algorithms for quantitative proteomics by mass spectrometry

Author keywords

Label free quantitation; LC MS; Peptide quantitation; Protein quantitation; Stable isotope labeling

Indexed keywords

CARBON; CARBON 14; NITROGEN; NITROGEN 15; OXYGEN; OXYGEN 18; PEPTIDE; PROTEIN; SULFUR; SULFUR 35; TRITIUM;

EID: 84883188758     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-392-3_8     Document Type: Article
Times cited : (13)

References (81)
  • 1
  • 2
    • 40549141833 scopus 로고    scopus 로고
    • Design and analysis issues in quantitative proteomics studies
    • Karp NA, Lilley KS (2007) Design and analysis issues in quantitative proteomics studies. Proteomics 7(Suppl 1):42-50
    • (2007) Proteomics , vol.7 , Issue.SUPPL.1 , pp. 42-50
    • Karp, N.A.1    Lilley, K.S.2
  • 4
    • 34548396821 scopus 로고    scopus 로고
    • Methods, algorithms and tools in computational proteomics: A practical point of view
    • Matthiesen R (2007) Methods, algorithms and tools in computational proteomics: A practical point of view. Proteomics 7:2815-2832
    • (2007) Proteomics , vol.7 , pp. 2815-2832
    • Matthiesen, R.1
  • 5
    • 3543121341 scopus 로고    scopus 로고
    • Quantification in proteomics through stable isotope coding: A review
    • Julkar S, Regnier F (2004) Quantification in proteomics through stable isotope coding: A review. J Proteome Res 3:350-363
    • (2004) J Proteome Res , vol.3 , pp. 350-363
    • Julkar, S.1    Regnier, F.2
  • 6
    • 20544459800 scopus 로고    scopus 로고
    • Absolute quantification strategies in proteomics based on mass spectrometry
    • Bronstrup M (2004) Absolute quantification strategies in proteomics based on mass spectrometry. Expert Rev Proteomics 1:503-512
    • (2004) Expert Rev Proteomics , vol.1 , pp. 503-512
    • Bronstrup, M.1
  • 7
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 8
    • 42649091860 scopus 로고    scopus 로고
    • Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
    • Mirzaei H, McBee JK, Watts J, Aebersold R (2008) Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Mol Cell Proteomics 7:813-823
    • (2008) Mol Cell Proteomics , vol.7 , pp. 813-823
    • Mirzaei, H.1    McBee, J.K.2    Watts, J.3    Aebersold, R.4
  • 9
    • 33847179916 scopus 로고    scopus 로고
    • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
    • Pratt JM, Simpson DM, Doherty MK, Rivers J, Gaskell SJ, Beynon RJ (2006) Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat Protoc 1:1029-1043
    • (2006) Nat Protoc , vol.1 , pp. 1029-1043
    • Pratt, J.M.1    Simpson, D.M.2    Doherty, M.K.3    Rivers, J.4    Gaskell, S.J.5    Beynon, R.J.6
  • 10
    • 34548427053 scopus 로고    scopus 로고
    • Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT
    • Rivers J, Simpson DM, Robertson DH, Gaskell SJ, Beynon RJ (2007) Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT. Mol Cell Proteomics 6:1416-1427
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1416-1427
    • Rivers, J.1    Simpson, D.M.2    Robertson, D.H.3    Gaskell, S.J.4    Beynon, R.J.5
  • 11
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson L, Hunter CL (2006) Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol Cell Proteomics 5:573-588
    • (2006) Mol Cell Proteomics , vol.5 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 12
    • 8844233567 scopus 로고    scopus 로고
    • Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA
    • Anderson NL, Anderson NG, Haines LR, Hardie DB, Olafson RW, Pearson TW (2004) Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA). J Proteome Res 3:235-244
    • (2004) J Proteome Res , vol.3 , pp. 235-244
    • Anderson, N.L.1    Anderson, N.G.2    Haines, L.R.3    Hardie, D.B.4    Olafson, R.W.5    Pearson, T.W.6
  • 13
    • 13444260275 scopus 로고    scopus 로고
    • The absolute quantification strategy: A general procedure for the quantification of proteins and post-Translational modifications
    • Kirkpatrick DS, Gerber SA, Gygi SP (2005) The absolute quantification strategy: A general procedure for the quantification of proteins and post-Translational modifications. Methods 35:265-273
    • (2005) Methods , vol.35 , pp. 265-273
    • Kirkpatrick, D.S.1    Gerber, S.A.2    Gygi, S.P.3
  • 14
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative profiling of differentiationinduced microsomal proteins using isotopecoded affinity tags and mass spectrometry
    • Han DK, Eng J, Zhou H, Aebersold R (2001) Quantitative profiling of differentiationinduced microsomal proteins using isotopecoded affinity tags and mass spectrometry. Nat Biotechnol 19:946-951
    • (2001) Nat Biotechnol , vol.19 , pp. 946-951
    • Han, D.K.1    Eng, J.2    Zhou, H.3    Aebersold, R.4
  • 18
    • 79551483264 scopus 로고    scopus 로고
    • Discussion on common data analysis strategies used in MS-based proteomics
    • Matthiesen R, Azevedo L, Amorim A, Carvalho AS (2011) Discussion on common data analysis strategies used in MS-based proteomics. Proteomics 11:604-619
    • (2011) Proteomics , vol.11 , pp. 604-619
    • Matthiesen, R.1    Azevedo, L.2    Amorim, A.3    Carvalho, A.S.4
  • 20
    • 39049183145 scopus 로고    scopus 로고
    • Extracting monoisotopic single-charge peaks from liquid chromatography-electrospray ionization-mass spectrometry
    • Matthiesen R (2006) Extracting monoisotopic single-charge peaks from liquid chromatography-electrospray ionization-mass spectrometry. Methods Mol Biol 367:37-48
    • (2006) Methods Mol Biol , vol.367 , pp. 37-48
    • Matthiesen, R.1
  • 21
    • 2342625386 scopus 로고    scopus 로고
    • Deconvolution of isobaric interferences in mass spectra
    • Meija J, Caruso JA (2004) Deconvolution of isobaric interferences in mass spectra. J Am Soc Mass Spectrom 15:654-658
    • (2004) J Am Soc Mass Spectrom , vol.15 , pp. 654-658
    • Meija, J.1    Caruso, J.A.2
  • 22
    • 39049184740 scopus 로고    scopus 로고
    • Virtual Expert Mass Spectrometrist v3.0: An integrated tool for proteome analysis
    • Matthiesen R (2006) Virtual Expert Mass Spectrometrist v3.0: An integrated tool for proteome analysis. Methods Mol Biol 367:121-138
    • (2006) Methods Mol Biol , vol.367 , pp. 121-138
    • Matthiesen, R.1
  • 23
    • 0346122950 scopus 로고    scopus 로고
    • A correlation algorithm for the automated quantitative analysis of shotgun proteomics data
    • MacCoss MJ,Wu CC, Liu H, Sadygov R, Yates JR 3rd (2003) A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal Chem 75:6912-6921
    • (2003) Anal Chem , vol.75 , pp. 6912-6921
    • MacCoss, M.J.1    Wu, C.C.2    Liu, H.3    Sadygov, R.4    Yates III, J.R.5
  • 24
    • 0344737959 scopus 로고    scopus 로고
    • Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
    • Li XJ, Zhang H, Ranish JA, Aebersold R (2003) Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry. Anal Chem 75:6648-6657
    • (2003) Anal Chem , vol.75 , pp. 6648-6657
    • Li, X.J.1    Zhang, H.2    Ranish, J.A.3    Aebersold, R.4
  • 25
    • 33750336592 scopus 로고    scopus 로고
    • Quantitative proteomics to study mitogen-Activated protein kinases
    • Blagoev B, Mann M (2006) Quantitative proteomics to study mitogen-Activated protein kinases. Methods 40:243-250
    • (2006) Methods , vol.40 , pp. 243-250
    • Blagoev, B.1    Mann, M.2
  • 26
    • 22844436250 scopus 로고    scopus 로고
    • Quantitative mouse brain proteomics using culturederived isotope tags as internal standards
    • Ishihama Y, Sato T, Tabata T, Miyamoto N, Sagane K, Nagasu T, Oda Y (2005) Quantitative mouse brain proteomics using culturederived isotope tags as internal standards. Nat Biotechnol 23:617-621
    • (2005) Nat Biotechnol , vol.23 , pp. 617-621
    • Ishihama, Y.1    Sato, T.2    Tabata, T.3    Miyamoto, N.4    Sagane, K.5    Nagasu, T.6    Oda, Y.7
  • 27
    • 0035384687 scopus 로고    scopus 로고
    • Proteolytic 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
    • Yao X, Freas A, Ramirez J, Demirev PA, Fenselau C (2001) Proteolytic 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus. Anal Chem 73:2836-2842
    • (2001) Anal Chem , vol.73 , pp. 2836-2842
    • Yao, X.1    Freas, A.2    Ramirez, J.3    Demirev, P.A.4    Fenselau, C.5
  • 28
    • 0037578010 scopus 로고    scopus 로고
    • Dissection of proteolytic 18O labeling: Endoproteasecatalyzed 16O-To-18O exchange of truncated peptide substrates
    • Yao X, Afonso C, Fenselau C (2003) Dissection of proteolytic 18O labeling: Endoproteasecatalyzed 16O-To-18O exchange of truncated peptide substrates. J Proteome Res 2:147-152
    • (2003) J Proteome Res , vol.2 , pp. 147-152
    • Yao, X.1    Afonso, C.2    Fenselau, C.3
  • 31
    • 34547112014 scopus 로고    scopus 로고
    • Improved method for differential expression proteomics using trypsincatalyzed 18O labeling with a correction for labeling efficiency
    • Ramos-Fernandez A, Lopez-Ferrer D, Vazquez J (2007) Improved method for differential expression proteomics using trypsincatalyzed 18O labeling with a correction for labeling efficiency. Mol Cell Proteomics 6:1274-1286
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1274-1286
    • Ramos-Fernandez, A.1    Lopez-Ferrer, D.2    Vazquez, J.3
  • 33
    • 15844376557 scopus 로고    scopus 로고
    • version 2.3.1 Access July 7 2003, National Institute of Standards and Technology, Gaithersburg MD
    • Coursey J, Schwab D, Dragoset R (2001) Atomic weights and isotopic compositions (version 2.3.1). http://physics.nist.gov/Comp Access July 7, 2003, National Institute of Standards and Technology, Gaithersburg, MD
    • (2001) Atomic Weights And Isotopic Compositions
    • Coursey, J.1    Schwab, D.2    Dragoset, R.3
  • 36
    • 0033915395 scopus 로고    scopus 로고
    • Quantitation of peptides and proteins by matrix-Assisted laser desorption/ionization mass spectrometry using 18O-labeled internal standards
    • Mirgorodskaya O, Kozmin Y, Titov M, Körner R, Sönksen C, Roepstorff P (2000) Quantitation of peptides and proteins by matrix-Assisted laser desorption/ionization mass spectrometry using 18O-labeled internal standards. Rapid Commun Mass Spectrom 14:1226-1232
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 1226-1232
    • Mirgorodskaya, O.1    Kozmin, Y.2    Titov, M.3    Körner, R.4    Sönksen, C.5    Roepstorff, P.6
  • 37
    • 34547112014 scopus 로고    scopus 로고
    • Improved method for differential expression proteomics using trypsincatalyzed 18O labeling with a correction for labeling efficiency
    • Ramos-Fernández A, López-Ferrer D, Vázquez J (2007) Improved method for differential expression proteomics using trypsincatalyzed 18O labeling with a correction for labeling efficiency. Mol Cell Proteomics 6:1274-1286
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1274-1286
    • Ramos-Fernández, A.1    López-Ferrer, D.2    Vázquez, J.3
  • 38
    • 33750113080 scopus 로고    scopus 로고
    • Primary amine coding as a path to comparative proteomics
    • Regnier FE, Julka S (2006) Primary amine coding as a path to comparative proteomics. Proteomics 6:3968-3979
    • (2006) Proteomics , vol.6 , pp. 3968-3979
    • Regnier, F.E.1    Julka, S.2
  • 39
  • 40
    • 0036523809 scopus 로고    scopus 로고
    • Minimizing resolution of isotopically coded peptides in comparative proteomics
    • Zhang R, Regnier FE (2002) Minimizing resolution of isotopically coded peptides in comparative proteomics. J Proteome Res 1:139-147
    • (2002) J Proteome Res , vol.1 , pp. 139-147
    • Zhang, R.1    Regnier, F.E.2
  • 41
    • 0348014635 scopus 로고    scopus 로고
    • Stable-isotope dimethyl labeling for quantitative proteomics
    • Hsu JL, Huang SY, Chow NH, Chen SH (2003) Stable-isotope dimethyl labeling for quantitative proteomics. Anal Chem 75:6843-6852
    • (2003) Anal Chem , vol.75 , pp. 6843-6852
    • Hsu, J.L.1    Huang, S.Y.2    Chow, N.H.3    Chen, S.H.4
  • 42
    • 28544431940 scopus 로고    scopus 로고
    • De novo sequencing of neuropeptides using reductive isotopic methylation and investigation of ESI QTOF MS/MS fragmentation pattern of neuropeptides with N-Terminal dimethylation
    • Fu Q, Li L (2005) De novo sequencing of neuropeptides using reductive isotopic methylation and investigation of ESI QTOF MS/MS fragmentation pattern of neuropeptides with N-Terminal dimethylation. Anal Chem 77:7783-7795
    • (2005) Anal Chem , vol.77 , pp. 7783-7795
    • Fu, Q.1    Li, L.2
  • 43
    • 33749474110 scopus 로고    scopus 로고
    • Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomics
    • Hsu JL, Huang SY, Chen SH (2006) Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomics. Electrophoresis 27:3652-3660
    • (2006) Electrophoresis , vol.27 , pp. 3652-3660
    • Hsu, J.L.1    Huang, S.Y.2    Chen, S.H.3
  • 44
    • 55849093586 scopus 로고    scopus 로고
    • Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates
    • Boersema PJ, Aye TT, van Veen TA, Heck AJ, Mohammed S (2008) Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates. Proteomics 8:4624-4632
    • (2008) Proteomics , vol.8 , pp. 4624-4632
    • Boersema, P.J.1    Aye, T.T.2    Van Veen, T.A.3    Heck, A.J.4    Mohammed, S.5
  • 45
    • 64749108158 scopus 로고    scopus 로고
    • Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
    • Boersema PJ, Raijmakers R, Lemeer S, Mohammed S, Heck AJ (2009) Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat Protoc 4:484-494
    • (2009) Nat Protoc , vol.4 , pp. 484-494
    • Boersema, P.J.1    Raijmakers, R.2    Lemeer, S.3    Mohammed, S.4    Heck, A.J.5
  • 46
    • 0242407229 scopus 로고    scopus 로고
    • Deuterium isotope effects on hydrophobic interactions: The importance of dispersion interactions in the hydrophobic phase
    • Turowski M, Yamakawa N, Meller J, Kimata K, Ikegami T, Hosoya K, Tanaka N, Thornton ER (2003) Deuterium isotope effects on hydrophobic interactions: The importance of dispersion interactions in the hydrophobic phase. J Am Chem Soc 125:13836-13849
    • (2003) J Am Chem Soc , vol.125 , pp. 13836-13849
    • Turowski, M.1    Yamakawa, N.2    Meller, J.3    Kimata, K.4    Ikegami, T.5    Hosoya, K.6    Tanaka, N.7    Thornton, E.R.8
  • 47
    • 29144504045 scopus 로고    scopus 로고
    • Differential dimethyl labeling of N-Termini of peptides after guanidination for proteome analysis
    • Ji C, Guo N, Li L (2005) Differential dimethyl labeling of N-Termini of peptides after guanidination for proteome analysis. J Proteome Res 4:2099-2108
    • (2005) J Proteome Res , vol.4 , pp. 2099-2108
    • Ji, C.1    Guo, N.2    Li, L.3
  • 48
    • 84856489202 scopus 로고    scopus 로고
    • Quantification of protein isoforms in mesenchymal stem cells by reductive dimethylation of lysines in intact proteins
    • She YM, Rosu-Myles M, Walrond L, Cyr TD (2012) Quantification of protein isoforms in mesenchymal stem cells by reductive dimethylation of lysines in intact proteins. Proteomics 12:369-379
    • (2012) Proteomics , vol.12 , pp. 369-379
    • She, Y.M.1    Rosu-Myles, M.2    Walrond, L.3    Cyr, T.D.4
  • 49
    • 14844331822 scopus 로고    scopus 로고
    • Beyond quantitative proteomics: Signal enhancement of the a(1) ion as a mass tag for peptide sequencing using dimethyl labeling
    • Hsu JL, Huang SY, Shiea JT, Huang WY, Chen SH (2005) Beyond quantitative proteomics: Signal enhancement of the a(1) ion as a mass tag for peptide sequencing using dimethyl labeling. J Proteome Res 4:101-108
    • (2005) J Proteome Res , vol.4 , pp. 101-108
    • Hsu, J.L.1    Huang, S.Y.2    Shiea, J.T.3    Huang, W.Y.4    Chen, S.H.5
  • 50
    • 34250854662 scopus 로고    scopus 로고
    • Enhanced a(1) fragmentation for dimethylated proteins and its applications for N-Terminal identification and comparative protein quantitation
    • Hsu JL, Chen SH, Li DT, Shi FK (2007) Enhanced a(1) fragmentation for dimethylated proteins and its applications for N-Terminal identification and comparative protein quantitation. J Proteome Res 6:2376-2383
    • (2007) J Proteome Res , vol.6 , pp. 2376-2383
    • Hsu, J.L.1    Chen, S.H.2    Li, D.T.3    Shi, F.K.4
  • 51
    • 84861899284 scopus 로고    scopus 로고
    • Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins
    • Aye TT, Low TY, Bjorlykke Y, Barsnes H, Heck AJ, Berven FS (2012) Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. Anal Chem 84:4999-5006
    • (2012) Anal Chem , vol.84 , pp. 4999-5006
    • Aye, T.T.1    Low, T.Y.2    Bjorlykke, Y.3    Barsnes, H.4    Heck, A.J.5    Berven, F.S.6
  • 53
    • 61849088012 scopus 로고    scopus 로고
    • Improved CILAT reagents for quantitative proteomics
    • Zeng D, Li S (2009) Improved CILAT reagents for quantitative proteomics. Bioorg Med Chem Lett 19:2059-2061
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 2059-2061
    • Zeng, D.1    Li, S.2
  • 56
    • 27744497057 scopus 로고    scopus 로고
    • Protein and peptide identification algorithms using MS for use in high-Throughput, automated pipelines
    • Shadforth I, Crowther D, Bessant C (2005) Protein and peptide identification algorithms using MS for use in high-Throughput, automated pipelines. Proteomics 5:4082-4095
    • (2005) Proteomics , vol.5 , pp. 4082-4095
    • Shadforth, I.1    Crowther, D.2    Bessant, C.3
  • 57
    • 29144535689 scopus 로고    scopus 로고
    • VEMS 3.0: Algorithms and computational tools for tandem mass spectrometry based identification of post-Translational modifications in proteins
    • Matthiesen R, Trelle MB, Hojrup P, Bunkenborg J, Jensen ON (2005) VEMS 3.0: Algorithms and computational tools for tandem mass spectrometry based identification of post-Translational modifications in proteins. J Proteome Res 4:2338-2347
    • (2005) J Proteome Res , vol.4 , pp. 2338-2347
    • Matthiesen, R.1    Trelle, M.B.2    Hojrup, P.3    Bunkenborg, J.4    Jensen, O.N.5
  • 58
    • 36949019983 scopus 로고    scopus 로고
    • TandTRAQ: An open-source tool for integrated protein identification and quantitation
    • Laderas T, Bystrom C, McMillen D, Fan G, McWeeney S (2007) TandTRAQ: An open-source tool for integrated protein identification and quantitation. Bioinformatics 23:3394-3396
    • (2007) Bioinformatics , vol.23 , pp. 3394-3396
    • Laderas, T.1    Bystrom, C.2    McMillen, D.3    Fan, G.4    McWeeney, S.5
  • 61
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, Rappsilber J, MannM(2005) Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4:1265-1272
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7
  • 64
    • 79961193839 scopus 로고    scopus 로고
    • Characterization of a TiO 2) enrichment method for label-free quantitative phosphoproteomics
    • Montoya A, Beltran L, Casado P, Rodriguez-Prados JC, Cutillas PR (2011) Characterization of a TiO(2) enrichment method for label-free quantitative phosphoproteomics. Methods 54:370-378
    • (2011) Methods , vol.54 , pp. 370-378
    • Montoya, A.1    Beltran, L.2    Casado, P.3    Rodriguez-Prados, J.C.4    Cutillas, P.R.5
  • 65
    • 33644867564 scopus 로고    scopus 로고
    • MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data
    • Katajamaa M, Miettinen J, Oresic M (2006) MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics 22:634-636
    • (2006) Bioinformatics , vol.22 , pp. 634-636
    • Katajamaa, M.1    Miettinen, J.2    Oresic, M.3
  • 66
    • 25444526868 scopus 로고    scopus 로고
    • Processing methods for differential analysis of LC/MS profile data
    • Katajamaa M, Oresic M (2005) Processing methods for differential analysis of LC/MS profile data. BMC Bioinformatics 6:179
    • (2005) BMC Bioinformatics , vol.6 , pp. 179
    • Katajamaa, M.1    Oresic, M.2
  • 67
    • 26844492976 scopus 로고    scopus 로고
    • A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry
    • Li XJ, Yi EC, Kemp CJ, Zhang H, Aebersold R (2005) A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Mol Cell Proteomics 4:1328-1340
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1328-1340
    • Li, X.J.1    Yi, E.C.2    Kemp, C.J.3    Zhang, H.4    Aebersold, R.5
  • 73
    • 79551483264 scopus 로고    scopus 로고
    • Discussion on common data analysis strategies used in MS-based proteomics
    • Matthiesen R, Azevedo L, Amorim A, Carvalho AS (2011) Discussion on common data analysis strategies used in MS-based proteomics. Proteomics 11:604-619
    • (2011) Proteomics , vol.11 , pp. 604-619
    • Matthiesen, R.1    Azevedo, L.2    Amorim, A.3    Carvalho, A.S.4
  • 74
    • 65549119729 scopus 로고    scopus 로고
    • Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments
    • Schulz-Trieglaff O, Machtejevas E, Reinert K, Schluter H, Thiemann J, Unger K (2009) Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments. BioData Min 2:4
    • (2009) BioData Min , vol.2 , pp. 4
    • Schulz-Trieglaff, O.1    Machtejevas, E.2    Reinert, K.3    Schluter, H.4    Thiemann, J.5    Unger, K.6
  • 81
    • 0035632456 scopus 로고    scopus 로고
    • Isotopic deconvolution of matrix-Assisted laser desorption/ionization mass spectra for substances-class specific analysis of complex samples
    • Wehofsky M, Hoffmann R, Hubert M, Spengler B (2001) Isotopic deconvolution of matrix-Assisted laser desorption/ionization mass spectra for substances-class specific analysis of complex samples. Eur J Mass Spectrom 7:39-46
    • (2001) Eur J Mass Spectrom , vol.7 , pp. 39-46
    • Wehofsky, M.1    Hoffmann, R.2    Hubert, M.3    Spengler, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.