메뉴 건너뛰기




Volumn 12, Issue 3, 2012, Pages 369-379

Quantification of protein isoforms in mesenchymal stem cells by reductive dimethylation of lysines in intact proteins

Author keywords

Isotopic labeling; Mesenchymal stem cells; MS; Protein isoforms; Protein quantification; Technology

Indexed keywords

DEUTERIUM; HYDROGEN; ISOPROTEIN; LYSINE;

EID: 84856489202     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100308     Document Type: Article
Times cited : (22)

References (34)
  • 1
    • 57449088165 scopus 로고    scopus 로고
    • Proteomics studies confirm the presence of alternative protein isoforms on a large scale
    • Tress, M. L., Bodenmiller, B., Aebersold, R., Valencia, A., Proteomics studies confirm the presence of alternative protein isoforms on a large scale. Genome Biol. 2008, 9, R162.
    • (2008) Genome Biol. , vol.9
    • Tress, M.L.1    Bodenmiller, B.2    Aebersold, R.3    Valencia, A.4
  • 2
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue transcriptomes
    • Wang, E. T., Sandberg, R., Luo, S., Khrebtukova, I. et al., Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456, 470-476.
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1    Sandberg, R.2    Luo, S.3    Khrebtukova, I.4
  • 3
    • 77953764202 scopus 로고    scopus 로고
    • Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
    • Salomonis, N., Schlieve, C. R., Pereira, L., Wahlquist, C. et al., Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation. Proc. Natl. Acad. Sci. 2010, 107, 10514-10519.
    • (2010) Proc. Natl. Acad. Sci. , vol.107 , pp. 10514-10519
    • Salomonis, N.1    Schlieve, C.R.2    Pereira, L.3    Wahlquist, C.4
  • 4
    • 50249158511 scopus 로고    scopus 로고
    • Mesenchymal stem cells in health and disease
    • Uccelli, A., Moretta, L., Pistoia, V., Mesenchymal stem cells in health and disease. Nat. Rev. 2008, 8, 726-736.
    • (2008) Nat. Rev. , vol.8 , pp. 726-736
    • Uccelli, A.1    Moretta, L.2    Pistoia, V.3
  • 5
    • 67649171661 scopus 로고    scopus 로고
    • Intravenous hMSCs improve myocardial infarction in mice because cells embolized in lung are activated to secrete the anti-inflammatory protein TSG-6
    • Lee, R. H., Pulin, A. A., Seo, M. J., Kota, D. J. et al., Intravenous hMSCs improve myocardial infarction in mice because cells embolized in lung are activated to secrete the anti-inflammatory protein TSG-6. Cell Stem Cell 2009, 5, 54-63.
    • (2009) Cell Stem Cell , vol.5 , pp. 54-63
    • Lee, R.H.1    Pulin, A.A.2    Seo, M.J.3    Kota, D.J.4
  • 6
    • 0037820427 scopus 로고    scopus 로고
    • Bone marrow-derived stem cells initiate pancreatic regeneration
    • Hess, D., Li, L., Martin, M., Sakano, S. et al., Bone marrow-derived stem cells initiate pancreatic regeneration. Nat. Biotech. 2003, 21, 763-770.
    • (2003) Nat. Biotech. , vol.21 , pp. 763-770
    • Hess, D.1    Li, L.2    Martin, M.3    Sakano, S.4
  • 7
    • 67149117116 scopus 로고    scopus 로고
    • Revascularization of ischemic limbs after transplantation of human bone marrow cells with high aldehyde dehydrogenase activity
    • Capoccia, B. J., Robson, D. L., Levac, K. D., Maxwell, D. J. et al., Revascularization of ischemic limbs after transplantation of human bone marrow cells with high aldehyde dehydrogenase activity. Blood 2009, 113, 5340-5351.
    • (2009) Blood , vol.113 , pp. 5340-5351
    • Capoccia, B.J.1    Robson, D.L.2    Levac, K.D.3    Maxwell, D.J.4
  • 8
    • 58149326737 scopus 로고    scopus 로고
    • Bone marrow stromal cells attenuate sepsis via prostaglandin E(2)-dependent reprogramming of host macrophages to increase their interleukin-10 production
    • Németh, K., Leelahavanichkul, A., Yuen, P. S., Mayer, B. et al., Bone marrow stromal cells attenuate sepsis via prostaglandin E(2)-dependent reprogramming of host macrophages to increase their interleukin-10 production. Nat. Med. 2009, 15, 42-49.
    • (2009) Nat. Med. , vol.15 , pp. 42-49
    • Németh, K.1    Leelahavanichkul, A.2    Yuen, P.S.3    Mayer, B.4
  • 9
    • 77957320800 scopus 로고    scopus 로고
    • Non-multipotent stroma inhibit the proliferation and differentiation of mesenchymal stem cells in vitro
    • Rosu-Myles, M., Fair, J., Pearce, N., Mehic, J., Non-multipotent stroma inhibit the proliferation and differentiation of mesenchymal stem cells in vitro. Cytotherapy 2010, 12, 818-830.
    • (2010) Cytotherapy , vol.12 , pp. 818-830
    • Rosu-Myles, M.1    Fair, J.2    Pearce, N.3    Mehic, J.4
  • 10
    • 40549098971 scopus 로고    scopus 로고
    • Population proteomics: investigation of protein diversity in human populations
    • Nedelkov, D., Population proteomics: investigation of protein diversity in human populations. Proteomics 2008, 8, 779-786.
    • (2008) Proteomics , vol.8 , pp. 779-786
    • Nedelkov, D.1
  • 11
    • 78149363805 scopus 로고    scopus 로고
    • Mass spectrometric immunoassay for quantitative determination of protein biomarker isoforms
    • Trenchevska, O., Kamcheva, E., Nedelkov, D., Mass spectrometric immunoassay for quantitative determination of protein biomarker isoforms. J. Proteome Res. 2010, 9, 5969-5973.
    • (2010) J. Proteome Res. , vol.9 , pp. 5969-5973
    • Trenchevska, O.1    Kamcheva, E.2    Nedelkov, D.3
  • 12
    • 77952041357 scopus 로고    scopus 로고
    • Post-translational modifications and protein-specific isoforms in endometriosis revealed by 2D DIGE
    • Stephens, A. N., Hannan, N. J., Rainczuk, A., Meehan, K. L. et al., Post-translational modifications and protein-specific isoforms in endometriosis revealed by 2D DIGE. J. Proteome Res. 2010, 9, 2438-2449.
    • (2010) J. Proteome Res. , vol.9 , pp. 2438-2449
    • Stephens, A.N.1    Hannan, N.J.2    Rainczuk, A.3    Meehan, K.L.4
  • 14
    • 65249157969 scopus 로고    scopus 로고
    • An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications
    • Wu, S., Lourette, N. M., Tolić, N., Zhao, R. et al., An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications. J. Proteome Res. 2009, 8, 1347-1357.
    • (2009) J. Proteome Res. , vol.8 , pp. 1347-1357
    • Wu, S.1    Lourette, N.M.2    Tolić, N.3    Zhao, R.4
  • 15
    • 23944517301 scopus 로고    scopus 로고
    • A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system
    • Misek, D. E., Kuick, R., Wang, H., Galchev, V. et al., A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system. Proteomics 2005, 5, 3343-3352.
    • (2005) Proteomics , vol.5 , pp. 3343-3352
    • Misek, D.E.1    Kuick, R.2    Wang, H.3    Galchev, V.4
  • 16
    • 0348014635 scopus 로고    scopus 로고
    • Stable-isotope dimethyl labeling for quantitative proteomics
    • Hsu, J. L., Huang, S. Y., Chow, N. H., Chen, S. H., Stable-isotope dimethyl labeling for quantitative proteomics. Anal. Chem. 2003, 75, 6843-6852.
    • (2003) Anal. Chem. , vol.75 , pp. 6843-6852
    • Hsu, J.L.1    Huang, S.Y.2    Chow, N.H.3    Chen, S.H.4
  • 17
    • 20844458723 scopus 로고    scopus 로고
    • Quantitative proteome analysis using differential stable isotopic labeling and microbore LC-MALDI MS and MS/MS
    • Ji, C., Li, L., Quantitative proteome analysis using differential stable isotopic labeling and microbore LC-MALDI MS and MS/MS. J. Proteome Res. 2005, 4, 734-742.
    • (2005) J. Proteome Res. , vol.4 , pp. 734-742
    • Ji, C.1    Li, L.2
  • 18
    • 23944500823 scopus 로고    scopus 로고
    • Identification and quantification of differentially expressed proteins in E-cadherin deficient SCC9 cells and SCC9 transfectants expressing E-cadherin by dimethyl isotope labeling, LC-MALDI MS and MS/MS
    • Ji, C., Li, L., Gebre, M., Pasdar, M. et al., Identification and quantification of differentially expressed proteins in E-cadherin deficient SCC9 cells and SCC9 transfectants expressing E-cadherin by dimethyl isotope labeling, LC-MALDI MS and MS/MS. J. Proteome Res. 2005, 4, 1419-1426.
    • (2005) J. Proteome Res. , vol.4 , pp. 1419-1426
    • Ji, C.1    Li, L.2    Gebre, M.3    Pasdar, M.4
  • 19
    • 29144504045 scopus 로고    scopus 로고
    • Differential dimethyl labeling of N-termini of peptides after guanidination for proteome analysis
    • Ji, C., Guo, N., Li, L., Differential dimethyl labeling of N-termini of peptides after guanidination for proteome analysis. J. Proteome Res. 2005, 4, 2099-2108.
    • (2005) J. Proteome Res. , vol.4 , pp. 2099-2108
    • Ji, C.1    Guo, N.2    Li, L.3
  • 20
    • 33750112261 scopus 로고    scopus 로고
    • Effect of 2MEGA labeling on membrane proteome analysis using LC-ESI QTOF MS
    • Ji, C., Lo, A., Marcus, S., Li, L., Effect of 2MEGA labeling on membrane proteome analysis using LC-ESI QTOF MS. J. Proteome Res. 2006, 5, 2567-2576.
    • (2006) J. Proteome Res. , vol.5 , pp. 2567-2576
    • Ji, C.1    Lo, A.2    Marcus, S.3    Li, L.4
  • 21
    • 33645468211 scopus 로고    scopus 로고
    • Quantitation of protein phosphorylation in pregnant rat uteri using stable isotope dimethyl labeling coupled with IMAC
    • Huang, S. Y., Tsai, M. L., Wu, C. J., Hsu, J. L. et al., Quantitation of protein phosphorylation in pregnant rat uteri using stable isotope dimethyl labeling coupled with IMAC. Proteomics 2006, 6, 1722-1734.
    • (2006) Proteomics , vol.6 , pp. 1722-1734
    • Huang, S.Y.1    Tsai, M.L.2    Wu, C.J.3    Hsu, J.L.4
  • 22
    • 33749474110 scopus 로고    scopus 로고
    • Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomics
    • Hsu, J. L., Huang, S. Y., Chen, S. H., Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomics. Electrophoresis 2006, 27, 3652-3660.
    • (2006) Electrophoresis , vol.27 , pp. 3652-3660
    • Hsu, J.L.1    Huang, S.Y.2    Chen, S.H.3
  • 23
    • 33846589423 scopus 로고    scopus 로고
    • A study of reproducibility of guanidination-dimethylation labeling and liquid chromatography matrix-assisted laser desorption ionization mass spectrometry for relative proteome quantification
    • Ji, C., Zhang, N., Damaraju, S., Damaraju, V. L. et al., A study of reproducibility of guanidination-dimethylation labeling and liquid chromatography matrix-assisted laser desorption ionization mass spectrometry for relative proteome quantification. Anal. Chim. Acta 2007, 585, 219-226.
    • (2007) Anal. Chim. Acta , vol.585 , pp. 219-226
    • Ji, C.1    Zhang, N.2    Damaraju, S.3    Damaraju, V.L.4
  • 24
    • 36448966459 scopus 로고    scopus 로고
    • Stable-isotope dimethylation labeling combined with LC-ESI MS for quantification of amine-containing metabolites in biological samples
    • Guo, K., Ji, C., Li, L., Stable-isotope dimethylation labeling combined with LC-ESI MS for quantification of amine-containing metabolites in biological samples. Anal. Chem. 2007, 79, 8631-8638.
    • (2007) Anal. Chem. , vol.79 , pp. 8631-8638
    • Guo, K.1    Ji, C.2    Li, L.3
  • 25
    • 52649181646 scopus 로고    scopus 로고
    • Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity
    • Raijmakers, R., Berkers, C. R., de Jong, A., Ovaa, H. et al., Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity. Mol. Cell. Proteomics 2008, 7, 1755-1762.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1755-1762
    • Raijmakers, R.1    Berkers, C.R.2    de Jong, A.3    Ovaa, H.4
  • 26
    • 55849093586 scopus 로고    scopus 로고
    • Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates
    • Boersema, P. J., Aye, T. T., van Veen, T. A., Heck, A. J. et al., Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates. Proteomics 2008, 8, 4624-4632.
    • (2008) Proteomics , vol.8 , pp. 4624-4632
    • Boersema, P.J.1    Aye, T.T.2    van Veen, T.A.3    Heck, A.J.4
  • 27
    • 64749108158 scopus 로고    scopus 로고
    • Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
    • Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S. et al., Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 2009, 4, 484-494.
    • (2009) Nat. Protoc. , vol.4 , pp. 484-494
    • Boersema, P.J.1    Raijmakers, R.2    Lemeer, S.3    Mohammed, S.4
  • 28
    • 76649110554 scopus 로고    scopus 로고
    • In depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immuno-affinity purification and stable isotope dimethyl labeling
    • Boersema, P. J., Foong, L. Y., Ding, V. M., Lemeer, S. et al., In depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immuno-affinity purification and stable isotope dimethyl labeling. Mol. Cell. Proteomics 2010, 9, 84-99.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 84-99
    • Boersema, P.J.1    Foong, L.Y.2    Ding, V.M.3    Lemeer, S.4
  • 29
    • 70649105587 scopus 로고    scopus 로고
    • A universal strategy for development of a method for absolute quantification of therapeutic monoclonal antibodies in biological matrices using differential dimethyl labeling coupled with ultra performance liquid chromatography-tandem mass spectrometry
    • Ji, C., Sadagopan, N., Zhang, Y., Lepsy, C., A universal strategy for development of a method for absolute quantification of therapeutic monoclonal antibodies in biological matrices using differential dimethyl labeling coupled with ultra performance liquid chromatography-tandem mass spectrometry. Anal. Chem. 2009, 81, 9321-9328.
    • (2009) Anal. Chem. , vol.81 , pp. 9321-9328
    • Ji, C.1    Sadagopan, N.2    Zhang, Y.3    Lepsy, C.4
  • 30
    • 34250854662 scopus 로고    scopus 로고
    • Enhanced a1 fragmentation for dimethylated proteins and its applications for N-terminal identification and comparative protein quantitation
    • Hsu, J. L., Chen, S. H., Li, D. T., Shi, F. K., Enhanced a1 fragmentation for dimethylated proteins and its applications for N-terminal identification and comparative protein quantitation. J. Proteome Res. 2007, 6, 2376-2383.
    • (2007) J. Proteome Res. , vol.6 , pp. 2376-2383
    • Hsu, J.L.1    Chen, S.H.2    Li, D.T.3    Shi, F.K.4
  • 31
    • 37249092935 scopus 로고    scopus 로고
    • Dimethyl isotope-coded affinity selection for the analysis of free and blocked N-termini of proteins using LC-MS/MS
    • Shen, P. T., Hsu, J. L., Chen, S. H., Dimethyl isotope-coded affinity selection for the analysis of free and blocked N-termini of proteins using LC-MS/MS. Anal. Chem. 2007, 79, 9520-9530.
    • (2007) Anal. Chem. , vol.79 , pp. 9520-9530
    • Shen, P.T.1    Hsu, J.L.2    Chen, S.H.3
  • 32
    • 38849147098 scopus 로고    scopus 로고
    • Global amine and acid functional group modification of proteins
    • Krusemark, C. J., Ferguson, J. T., Wenger, C. D., Kelleher, N. L. et al., Global amine and acid functional group modification of proteins. Anal. Chem. 2008, 80, 713-720.
    • (2008) Anal. Chem. , vol.80 , pp. 713-720
    • Krusemark, C.J.1    Ferguson, J.T.2    Wenger, C.D.3    Kelleher, N.L.4
  • 33
    • 0020120639 scopus 로고
    • Reductive methylation of proteins with sodium cyanoborohydride. identification, suppression and possible uses of N-cyanomethyl by-products
    • Gidley, M. J., Sanders, J. K., Reductive methylation of proteins with sodium cyanoborohydride. identification, suppression and possible uses of N-cyanomethyl by-products. Biochem. J. 1982, 203, 331-334.
    • (1982) Biochem. J. , vol.203 , pp. 331-334
    • Gidley, M.J.1    Sanders, J.K.2
  • 34
    • 0019165515 scopus 로고
    • Protein labeling by reductive methylation with sodium cyanoborohydride: effect of cyanide and metal ions on the reaction
    • Jentoft, N., Dearborn, D. G., Protein labeling by reductive methylation with sodium cyanoborohydride: effect of cyanide and metal ions on the reaction. Anal. Biochem. 1980, 106, 186-190.
    • (1980) Anal. Biochem. , vol.106 , pp. 186-190
    • Jentoft, N.1    Dearborn, D.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.