메뉴 건너뛰기




Volumn 26, Issue 5, 2013, Pages 708-722

Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden

Author keywords

Cancer systems biology; Gene expression microarray; Melanoma; Melanoma prognosis; MicroRNA; Protein protein interaction

Indexed keywords

B RAF KINASE; MITOGEN ACTIVATED PROTEIN KINASE; TRANSCRIPTOME;

EID: 84882915851     PISSN: 17551471     EISSN: 1755148X     Source Type: Journal    
DOI: 10.1111/pcmr.12126     Document Type: Article
Times cited : (11)

References (50)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology
    • Ashburner, M., Ball, C.A., Blake, J.A. et al. (2000). Gene ontology: tool for the unification of biology. Nat. Genet. 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 3
    • 74949143594 scopus 로고    scopus 로고
    • Final version of 2009 AJCC melanoma staging and classification
    • Balch, C.M., Gershenwald, J.E., Soong, S.J. et al. (2009). Final version of 2009 AJCC melanoma staging and classification. J. Clin. Oncol. 27, 6199-6206.
    • (2009) J. Clin. Oncol. , vol.27 , pp. 6199-6206
    • Balch, C.M.1    Gershenwald, J.E.2    Soong, S.J.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B Stat. Methodol. 57, 289-300.
    • (1995) J. R. Stat. Soc. Series B Stat. Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 73949140415 scopus 로고    scopus 로고
    • Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival
    • Bogunovic, D., O'neilla, D.W., Belitskaya-Levya, I. et al. (2009). Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival. Proc. Natl Acad. Sci. USA 106, 20429-20434.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 20429-20434
    • Bogunovic, D.1    O'neilla, D.W.2    Belitskaya-Levya, I.3
  • 7
    • 33748693297 scopus 로고    scopus 로고
    • Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer
    • Buyse, M., Loi, S., Van't Veer, L. et al. (2006). Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer. J. Natl Cancer Inst. 98, 1183-1192.
    • (2006) J. Natl Cancer Inst. , vol.98 , pp. 1183-1192
    • Buyse, M.1    Loi, S.2    Van't Veer, L.3
  • 8
    • 77952745604 scopus 로고    scopus 로고
    • Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures
    • Chen, J., Sam, L., Huang, Y., Lee, Y., Li, J., Liu, Y., Xing, H.R., and Lussier, Y.A. (2010). Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. J. Biomed. Inform. 43, 385-396.
    • (2010) J. Biomed. Inform. , vol.43 , pp. 385-396
    • Chen, J.1    Sam, L.2    Huang, Y.3    Lee, Y.4    Li, J.5    Liu, Y.6    Xing, H.R.7    Lussier, Y.A.8
  • 9
    • 84863673204 scopus 로고    scopus 로고
    • Improved survival with MEK inhibition in BRAF-mutated melanoma
    • Flaherty, K.T., Robert, C., Hersey, P. et al. (2012). Improved survival with MEK inhibition in BRAF-mutated melanoma. N. Engl. J. Med. 367, 107-114.
    • (2012) N. Engl. J. Med. , vol.367 , pp. 107-114
    • Flaherty, K.T.1    Robert, C.2    Hersey, P.3
  • 10
    • 80054709141 scopus 로고    scopus 로고
    • miRNA biomarkers in breast cancer detection and management
    • Fu, S.W., Chen, L., and Man, Y. (2011). miRNA biomarkers in breast cancer detection and management. J. Cancer 2, 116-122.
    • (2011) J. Cancer , vol.2 , pp. 116-122
    • Fu, S.W.1    Chen, L.2    Man, Y.3
  • 12
    • 84863393080 scopus 로고    scopus 로고
    • Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
    • Gerlinger, M., Rowan, A.J., Horswell, S. et al. (2012). Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Engl. J. Med. 366, 883-892.
    • (2012) N. Engl. J. Med. , vol.366 , pp. 883-892
    • Gerlinger, M.1    Rowan, A.J.2    Horswell, S.3
  • 13
    • 65049084535 scopus 로고    scopus 로고
    • MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling
    • Glud, M., Klausen, M., Gniadecki, R., Rossing, M., Hastrup, N., Nielsen, F.C., and Drzewiecki, K.T. (2009). MicroRNA expression in melanocytic nevi: the usefulness of formalin-fixed, paraffin-embedded material for miRNA microarray profiling. J. Invest. Dermatol. 129, 1219-1224.
    • (2009) J. Invest. Dermatol. , vol.129 , pp. 1219-1224
    • Glud, M.1    Klausen, M.2    Gniadecki, R.3    Rossing, M.4    Hastrup, N.5    Nielsen, F.C.6    Drzewiecki, K.T.7
  • 14
    • 77954760173 scopus 로고    scopus 로고
    • Biomarkers: the useful and the not so useful - an assessment of molecular prognostic markers for cutaneous melanoma
    • Gould Rothberg, B.E., and Rimm, D. (2010). Biomarkers: the useful and the not so useful - an assessment of molecular prognostic markers for cutaneous melanoma. J. Invest. Dermatol. 130, 1971-1987.
    • (2010) J. Invest. Dermatol. , vol.130 , pp. 1971-1987
    • Gould Rothberg, B.E.1    Rimm, D.2
  • 15
    • 63649143625 scopus 로고    scopus 로고
    • Tissue biomarkers for prognosis in cutaneous melanoma: a systematic review and meta-analysis
    • Gould Rothberg, B.E., Bracken, M.B., and Rimm, D.L. (2009). Tissue biomarkers for prognosis in cutaneous melanoma: a systematic review and meta-analysis. J. Natl Cancer Inst. 101, 452-474.
    • (2009) J. Natl Cancer Inst. , vol.101 , pp. 452-474
    • Gould Rothberg, B.E.1    Bracken, M.B.2    Rimm, D.L.3
  • 16
    • 84862305656 scopus 로고    scopus 로고
    • Acquired resistance to BRAF inhibition can confer cross-resistance to combined BRAF/MEK inhibition
    • Gowrishankar, K., Snoyman, S., Pupo, G.M., Becker, T.M., Kefford, R.F., and Rizos, H. (2012). Acquired resistance to BRAF inhibition can confer cross-resistance to combined BRAF/MEK inhibition. J. Invest. Dermatol. 132, 1850-1859.
    • (2012) J. Invest. Dermatol. , vol.132 , pp. 1850-1859
    • Gowrishankar, K.1    Snoyman, S.2    Pupo, G.M.3    Becker, T.M.4    Kefford, R.F.5    Rizos, H.6
  • 17
    • 79955568605 scopus 로고    scopus 로고
    • Regulation of cancer aggressive features in melanoma cells by microRNAs
    • Greenberg, E., Hershkovitz, L., Itzhaki, O. et al. (2011). Regulation of cancer aggressive features in melanoma cells by microRNAs. PLoS ONE 6, e18936.
    • (2011) PLoS ONE , vol.6
    • Greenberg, E.1    Hershkovitz, L.2    Itzhaki, O.3
  • 18
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: the next generation
    • Hanahan, D., and Weinberg, R.A. (2011). Hallmarks of cancer: the next generation. Cell 144, 646-674.
    • (2011) Cell , vol.144 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2
  • 19
    • 73549090972 scopus 로고    scopus 로고
    • Structure of protein interaction networks and their implications on drug design
    • Hase, T., Tanaka, H., Suzuki, Y., Nakagawa, S., and Kitano, H. (2009). Structure of protein interaction networks and their implications on drug design. PLoS Comput. Biol. 5, e1000550.
    • (2009) PLoS Comput. Biol. , vol.5
    • Hase, T.1    Tanaka, H.2    Suzuki, Y.3    Nakagawa, S.4    Kitano, H.5
  • 20
    • 84864258996 scopus 로고    scopus 로고
    • A landscape of driver mutations in melanoma
    • Hodis, E., Watson, I.R., Kryukov, G.V. et al. (2012). A landscape of driver mutations in melanoma. Cell 150, 251-263.
    • (2012) Cell , vol.150 , pp. 251-263
    • Hodis, E.1    Watson, I.R.2    Kryukov, G.V.3
  • 22
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • Ideker, T., and Krogan, N.J. (2012). Differential network biology. Mol. Syst. Biol. 8, 1-9.
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 1-9
    • Ideker, T.1    Krogan, N.J.2
  • 26
    • 74049122828 scopus 로고    scopus 로고
    • Cancer systems biology: a network modeling perspective
    • Kreeger, P.K., and Lauffenburger, D.A. (2010). Cancer systems biology: a network modeling perspective. Carcinogenesis 31, 2-8.
    • (2010) Carcinogenesis , vol.31 , pp. 2-8
    • Kreeger, P.K.1    Lauffenburger, D.A.2
  • 27
    • 79953723136 scopus 로고    scopus 로고
    • Frequencies of BRAF and NRAS mutations are different in histologic types and sites of origin of cutaneous melanoma: a meta-analysis
    • Lee, J.H., Choi, J.W., and Kim, Y.S. (2010). Frequencies of BRAF and NRAS mutations are different in histologic types and sites of origin of cutaneous melanoma: a meta-analysis. Br. J. Dermatol. 164, 776-784.
    • (2010) Br. J. Dermatol. , vol.164 , pp. 776-784
    • Lee, J.H.1    Choi, J.W.2    Kim, Y.S.3
  • 30
    • 84872595484 scopus 로고    scopus 로고
    • BRAF mutation, NRAS mutation, and the absence of an immune-related expressed gene profile predict poor outcome in patients with stage III melanoma
    • Mann, G.J., Pupo, G.M., Campain, A.E. et al. (2013). BRAF mutation, NRAS mutation, and the absence of an immune-related expressed gene profile predict poor outcome in patients with stage III melanoma. J. Invest. Dermatol. 133, 509-517.
    • (2013) J. Invest. Dermatol. , vol.133 , pp. 509-517
    • Mann, G.J.1    Pupo, G.M.2    Campain, A.E.3
  • 34
    • 56149110341 scopus 로고    scopus 로고
    • Integrin β3 expression is regulated by let-7a miRNA in malignant melanoma
    • Muller, D.W., and Bosserhoff, A.K. (2008). Integrin β3 expression is regulated by let-7a miRNA in malignant melanoma. Oncogene 27, 6698-6706.
    • (2008) Oncogene , vol.27 , pp. 6698-6706
    • Muller, D.W.1    Bosserhoff, A.K.2
  • 35
    • 0348223934 scopus 로고    scopus 로고
    • NRAS and BRAF mutations arise early during melanoma pathogenesis and are preserved throughout tumor progression
    • Omholt, K., Platz, A., Kanter, L., Ringborg, U., and Hansson, J. (2003). NRAS and BRAF mutations arise early during melanoma pathogenesis and are preserved throughout tumor progression. Clin. Cancer Res. 9, 6483-6488.
    • (2003) Clin. Cancer Res. , vol.9 , pp. 6483-6488
    • Omholt, K.1    Platz, A.2    Kanter, L.3    Ringborg, U.4    Hansson, J.5
  • 36
    • 19944422061 scopus 로고    scopus 로고
    • A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
    • Paik, S., Shak, S., Tang, G. et al. (2004). A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N. Engl. J. Med. 351, 2817-2826.
    • (2004) N. Engl. J. Med. , vol.351 , pp. 2817-2826
    • Paik, S.1    Shak, S.2    Tang, G.3
  • 37
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed, A., Sharov, V., White, J. et al. (2003). TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.1    Sharov, V.2    White, J.3
  • 38
    • 77951224561 scopus 로고    scopus 로고
    • MicroRNA-15b represents an independent prognostic parameter and is correlated with tumor cell proliferation and apoptosis in malignant melanoma
    • Satzger, I., Mattern, A., Kuettler, U., Weinspach, D., Voelker, B., Kapp, A., and Gutzmer, R. (2010). MicroRNA-15b represents an independent prognostic parameter and is correlated with tumor cell proliferation and apoptosis in malignant melanoma. Int. J. Cancer 126, 2553-2562.
    • (2010) Int. J. Cancer , vol.126 , pp. 2553-2562
    • Satzger, I.1    Mattern, A.2    Kuettler, U.3    Weinspach, D.4    Voelker, B.5    Kapp, A.6    Gutzmer, R.7
  • 39
    • 80051583874 scopus 로고    scopus 로고
    • Melanoma prognosis: a REMARK-based systematic review and bioinformatic analysis of immunohistochemical and gene microarray studies
    • Schramm, S.-J., and Mann, G.J. (2011). Melanoma prognosis: a REMARK-based systematic review and bioinformatic analysis of immunohistochemical and gene microarray studies. Mol. Cancer Ther. 10, 1520-1528.
    • (2011) Mol. Cancer Ther. , vol.10 , pp. 1520-1528
    • Schramm, S.-J.1    Mann, G.J.2
  • 40
    • 84855947682 scopus 로고    scopus 로고
    • Review and cross-validation of gene expression signatures and melanoma prognosis
    • Schramm, S.-J., Campain, A.E., Scolyer, R.A., Yang, Y.H., and Mann, G.J. (2012). Review and cross-validation of gene expression signatures and melanoma prognosis. J. Invest. Dermatol. 132, 274-283.
    • (2012) J. Invest. Dermatol. , vol.132 , pp. 274-283
    • Schramm, S.-J.1    Campain, A.E.2    Scolyer, R.A.3    Yang, Y.H.4    Mann, G.J.5
  • 41
    • 77649158902 scopus 로고    scopus 로고
    • Melanoma microRNA signature predicts post-recurrence survival
    • Segura, M.F., Belitskaya-Levy, I., Rose, A.E. et al. (2010). Melanoma microRNA signature predicts post-recurrence survival. Clin. Cancer Res. 16, 1577-1586.
    • (2010) Clin. Cancer Res. , vol.16 , pp. 1577-1586
    • Segura, M.F.1    Belitskaya-Levy, I.2    Rose, A.E.3
  • 44
    • 67651241055 scopus 로고    scopus 로고
    • Cutaneous melanoma in the era of molecular profiling
    • Thompson, J.F., Scolyer, R.A., and Kefford, R.F. (2009). Cutaneous melanoma in the era of molecular profiling. Lancet 374, 362-365.
    • (2009) Lancet , vol.374 , pp. 362-365
    • Thompson, J.F.1    Scolyer, R.A.2    Kefford, R.F.3
  • 45
    • 77955863455 scopus 로고    scopus 로고
    • Gene signature of the metastatic potential of cutaneous melanoma: too much for too little?
    • Timar, J., Gyorffy, B., and Raso, E. (2010). Gene signature of the metastatic potential of cutaneous melanoma: too much for too little? Clin. Exp. Metastasis 27, 371-387.
    • (2010) Clin. Exp. Metastasis , vol.27 , pp. 371-387
    • Timar, J.1    Gyorffy, B.2    Raso, E.3
  • 46
  • 48
    • 84859811931 scopus 로고    scopus 로고
    • Global microRNA level regulation of EGFR-driven cell-cycle protein network in breast cancer
    • Uhlmann, S., Mannsperger, H., Zhang, J.D. et al. (2012). Global microRNA level regulation of EGFR-driven cell-cycle protein network in breast cancer. Mol. Syst. Biol. 8, 570.
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 570
    • Uhlmann, S.1    Mannsperger, H.2    Zhang, J.D.3
  • 49
    • 73949136029 scopus 로고    scopus 로고
    • The contribution of gene expression profiling to breast cancer classification, prognostication and prediction: a retrospective of the last decade
    • Weigelt, B., Baehner, F.L., and Reis, J.S. (2010). The contribution of gene expression profiling to breast cancer classification, prognostication and prediction: a retrospective of the last decade. J. Pathol. 220, 263-280.
    • (2010) J. Pathol. , vol.220 , pp. 263-280
    • Weigelt, B.1    Baehner, F.L.2    Reis, J.S.3
  • 50
    • 78049507670 scopus 로고    scopus 로고
    • Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
    • Yao, C., Li, H., Zhou, C., Zhang, L., Zou, J., and Guo, Z. (2010). Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis. BMC Syst. Biol. 4, 151.
    • (2010) BMC Syst. Biol. , vol.4 , pp. 151
    • Yao, C.1    Li, H.2    Zhou, C.3    Zhang, L.4    Zou, J.5    Guo, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.