메뉴 건너뛰기




Volumn 5, Issue 3, 2012, Pages 360-367

Systems-based approaches to cardiovascular biomarker discovery

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL PRO BRAIN NATRIURETIC PEPTIDE; BRAIN NATRIURETIC PEPTIDE; C REACTIVE PROTEIN; COLLAGEN TYPE 2 ALPHA1; DAXX PROTEIN; GELATINASE A; GELATINASE B; HEME OXYGENASE 1; LATENT TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN 4; MID REGION PRO ADRENOMEDULLIN; MOLECULAR MARKER; OXIDIZED LOW DENSITY LIPOPROTEIN; PROTEIN CHAC1; TENASCIN; TENASCIN XB; TISSUE INHIBITOR OF METALLOPROTEINASE 1; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ZINC FINGER PROTEIN 2; TROPONIN I; TROPONIN T; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG; VASCULOTROPIN B;

EID: 84864632426     PISSN: 1942325X     EISSN: 19423268     Source Type: Journal    
DOI: 10.1161/CIRCGENETICS.112.962977     Document Type: Article
Times cited : (36)

References (41)
  • 1
    • 43549099569 scopus 로고    scopus 로고
    • Biomarkers in heart failure
    • Braunwald E. Biomarkers in heart failure. N Engl J Med. 2008;358: 2148-2159.
    • (2008) N Engl J Med , vol.358 , pp. 2148-2159
    • Braunwald, E.1
  • 3
    • 43549117072 scopus 로고    scopus 로고
    • Use of multiple biomarkers to improve the prediction of death from cardiovascular causes
    • Zethelius B, Berglund L, Sundström J, Ingelsson E, Basu S, Larsson A, et al. Use of multiple biomarkers to improve the prediction of death from cardiovascular causes. N Engl J Med. 2008;358:2107-2116.
    • (2008) N Engl J Med , vol.358 , pp. 2107-2116
    • Zethelius, B.1    Berglund, L.2    Sundström, J.3    Ingelsson, E.4    Basu, S.5    Larsson, A.6
  • 5
    • 77955044560 scopus 로고    scopus 로고
    • Evaluating the Quality of Research into a Single Prognostic Biomarker: A Systematic Review and Meta-analysis of 83 Studies of C-Reactive Protein in Stable Coronary Artery Disease
    • Hemingway H, Philipson P, Chen R, Fitzpatrick NK, Damant J, Shipley M, et al. Evaluating the Quality of Research into a Single Prognostic Biomarker: A Systematic Review and Meta-analysis of 83 Studies of C-Reactive Protein in Stable Coronary Artery Disease. PLoS Med. 2010; 7:e1000286.
    • (2010) PLoS Med , vol.7
    • Hemingway, H.1    Philipson, P.2    Chen, R.3    Fitzpatrick, N.K.4    Damant, J.5    Shipley, M.6
  • 7
    • 79953075929 scopus 로고    scopus 로고
    • Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in nondiabetic patients
    • Elashoff MR, Wingrove JA, Beineke P, Daniels SE, Tingley WG, Rosenberg S, et al. Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in nondiabetic patients. BMC Med Genomics. 2011;4:26.
    • (2011) BMC Med Genomics , vol.4 , pp. 26
    • Elashoff, M.R.1    Wingrove, J.A.2    Beineke, P.3    Daniels, S.E.4    Tingley, W.G.5    Rosenberg, S.6
  • 8
    • 79955786255 scopus 로고    scopus 로고
    • Systolic and diastolic heart failure are overlapping phenotypes within the heart failure spectrum
    • De Keulenaer GW, Brutsaert DL. Systolic and diastolic heart failure are overlapping phenotypes within the heart failure spectrum. Circulation. 2011;123:1996-2004.
    • (2011) Circulation , vol.123 , pp. 1996-2004
    • De Keulenaer, G.W.1    Brutsaert, D.L.2
  • 9
    • 79958811127 scopus 로고    scopus 로고
    • Systems biology of heart failure, challenges and hopes
    • Dewey FE, Wheeler MT, Ashley EA. Systems biology of heart failure, challenges and hopes. Curr Opin Cardiol. 2011;26:314-321.
    • (2011) Curr Opin Cardiol , vol.26 , pp. 314-321
    • Dewey, F.E.1    Wheeler, M.T.2    Ashley, E.A.3
  • 10
    • 79959662277 scopus 로고    scopus 로고
    • Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence
    • Chen JL, Li J, Stadler WM, Lussier YA. Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. J Am Med Inform Assoc. 2011;18:392-402.
    • (2011) J Am Med Inform Assoc , vol.18 , pp. 392-402
    • Chen, J.L.1    Li, J.2    Stadler, W.M.3    Lussier, Y.A.4
  • 11
    • 77953255983 scopus 로고    scopus 로고
    • A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers
    • Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M, et al. A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers. Mol Syst Biol. 2010;6:377.
    • (2010) Mol Syst Biol , vol.6 , pp. 377
    • Lefebvre, C.1    Rajbhandari, P.2    Alvarez, M.J.3    Bandaru, P.4    Lim, W.K.5    Sato, M.6
  • 13
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabási AL. Interactome networks and human disease. Cell. 2011;144:986-998.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabási, A.L.3
  • 14
    • 79960554596 scopus 로고    scopus 로고
    • Information encoded in a network of inflammation proteins predicts clinical outcome after myocardial infarction
    • Azuaje FJ, Rodius S, Zhang L, Devaux Y, Wagner DR. Information encoded in a network of inflammation proteins predicts clinical outcome after myocardial infarction. BMC Med Genomics. 2011;4:59.
    • (2011) BMC Med Genomics , vol.4 , pp. 59
    • Azuaje, F.J.1    Rodius, S.2    Zhang, L.3    Devaux, Y.4    Wagner, D.R.5
  • 15
    • 77955850711 scopus 로고    scopus 로고
    • Integrated protein network and microarray analysis to identify potential biomarkers after myocardial infarction
    • Devaux Y, Azuaje F, Vausort M, Yvorra C, Wagner DR. Integrated protein network and microarray analysis to identify potential biomarkers after myocardial infarction. Funct Integr Genomics. 2010;10:329-337.
    • (2010) Funct Integr Genomics , vol.10 , pp. 329-337
    • Devaux, Y.1    Azuaje, F.2    Vausort, M.3    Yvorra, C.4    Wagner, D.R.5
  • 16
    • 82655180611 scopus 로고    scopus 로고
    • Transforming growth factor-receptor 1 is a new candidate prognostic biomarker after acute myocardial infarction
    • Devaux Y, Bousquenaud M, Rodius S, Marie PY, Maskali F, Zhang L, et al. Transforming growth factor-receptor 1 is a new candidate prognostic biomarker after acute myocardial infarction. BMC Med Genomics. 2011;4:83.
    • (2011) BMC Med Genomics , vol.4 , pp. 83
    • Devaux, Y.1    Bousquenaud, M.2    Rodius, S.3    Marie, P.Y.4    Maskali, F.5    Zhang, L.6
  • 17
    • 81355123249 scopus 로고    scopus 로고
    • Software for systems biology: From tools to integrated platforms
    • Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Software for systems biology: from tools to integrated platforms. Nat Rev Genet. 2011;12: 821-832.
    • (2011) Nat Rev Genet , vol.12 , pp. 821-832
    • Ghosh, S.1    Matsuoka, Y.2    Asai, Y.3    Hsin, K.Y.4    Kitano, H.5
  • 19
    • 55249094833 scopus 로고    scopus 로고
    • The knowledgeintegrated network biomarkers discovery for major adverse cardiac events
    • Jin G, Zhou X, Wang H, Zhao H, Cui K, Zhang XS, et al. The knowledgeintegrated network biomarkers discovery for major adverse cardiac events. J Proteome Res. 2008;7:4013-4021.
    • (2008) J Proteome Res , vol.7 , pp. 4013-4021
    • Jin, G.1    Zhou, X.2    Wang, H.3    Zhao, H.4    Cui, K.5    Zhang, X.S.6
  • 20
    • 77950540760 scopus 로고    scopus 로고
    • Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction
    • Azuaje F, Devaux Y, Wagner DR. Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction. PLoS One. 2010; 5:e9661.
    • (2010) PLoS One , vol.5
    • Azuaje, F.1    Devaux, Y.2    Wagner, D.R.3
  • 21
    • 77957892202 scopus 로고    scopus 로고
    • Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy
    • Lin CC, Hsiang JT, Wu CY, Zhao H, Cui K, Zhang XS, et al. Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy. BMC Syst Biol. 2010;4:138.
    • (2010) BMC Syst Biol , vol.4 , pp. 138
    • Lin, C.C.1    Hsiang, J.T.2    Wu, C.Y.3    Zhao, H.4    Cui, K.5    Zhang, X.S.6
  • 22
    • 77952007626 scopus 로고    scopus 로고
    • Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network
    • Azuaje F, Devaux Y, Wagner DR. Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network. BMC Syst Biol. 2010 12;4:60.
    • (2010) BMC Syst Biol , vol.12 , Issue.4 , pp. 60
    • Azuaje, F.1    Devaux, Y.2    Wagner, D.R.3
  • 23
    • 80052174300 scopus 로고    scopus 로고
    • Network for activation of human endothelial cells by oxidized phospholipids: A critical role of heme oxygenase 1
    • Romanoski CE, Che N, Yin F, Mai N, Pouldar D, Civelek M, et al. Network for activation of human endothelial cells by oxidized phospholipids: a critical role of heme oxygenase 1. Circ Res. 2011;109:e27-e41.
    • (2011) Circ Res , vol.109
    • Romanoski, C.E.1    Che, N.2    Yin, F.3    Mai, N.4    Pouldar, D.5    Civelek, M.6
  • 25
    • 80052780609 scopus 로고    scopus 로고
    • Coronary artery endothelial transcriptome in vivo: Identification of endoplasmic reticulum stress and enhanced reactive oxygen species by gene connectivity network analysis
    • Civelek M, Manduchi E, Riley RJ, Stoeckert CJ Jr, Davies PF. Coronary artery endothelial transcriptome in vivo: identification of endoplasmic reticulum stress and enhanced reactive oxygen species by gene connectivity network analysis. Circ Cardiovasc Genet. 2011;4:243-252.
    • (2011) Circ Cardiovasc Genet , vol.4 , pp. 243-252
    • Civelek, M.1    Manduchi, E.2    Riley, R.J.3    Stoeckert, R.J.C.J.4    Davies, P.F.5
  • 27
    • 77956262458 scopus 로고    scopus 로고
    • Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation
    • Azuaje F, Devaux Y, Vausort M, Yvorra C, Wagner DR. Transcriptional networks characterize ventricular dysfunction after myocardial infarction: a proof-of-concept investigation. J Biomed Inform. 2010;43:812-819.
    • (2010) J Biomed Inform , vol.43 , pp. 812-819
    • Azuaje, F.1    Devaux, Y.2    Vausort, M.3    Yvorra, C.4    Wagner, D.R.5
  • 29
    • 79953781384 scopus 로고    scopus 로고
    • Whole genome network analysis of ion channels and connexins in myocardial infarction
    • Zhou R, Hang P, Zhu W, Su Z, Liang H, Du Z. Whole genome network analysis of ion channels and connexins in myocardial infarction. Cell Physiol Biochem. 2011;27:299-304.
    • (2011) Cell Physiol Biochem , vol.27 , pp. 299-304
    • Zhou, R.1    Hang, P.2    Zhu, W.3    Su, Z.4    Liang, H.5    Du, Z.6
  • 31
    • 78650735473 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
    • Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, et al. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol. 2010;28:827-838.
    • (2010) Nat Biotechnol , vol.28 , pp. 827-838
    • Shi, L.1    Campbell, G.2    Jones, W.D.3    Campagne, F.4    Wen, Z.5    Walker, S.J.6
  • 32
    • 77957833984 scopus 로고    scopus 로고
    • Cancer biomarkers: Can we turn recent failures into success?
    • Diamandis EP. Cancer biomarkers: can we turn recent failures into success? J Natl Cancer Inst. 2010;102:1462-1467.
    • (2010) J Natl Cancer Inst , vol.102 , pp. 1462-1467
    • Diamandis, E.P.1
  • 33
    • 78650551724 scopus 로고    scopus 로고
    • Why is it so difficult to data mine relevant genome-scale biomarkers?
    • Azuaje F. Why is it so difficult to data mine relevant genome-scale biomarkers? Expert Opin Med Diagn. 2011;5:1-4.
    • (2011) Expert Opin Med Diagn , vol.5 , pp. 1-4
    • Azuaje, F.1
  • 36
    • 78449244161 scopus 로고    scopus 로고
    • Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients
    • Rosenberg S, Elashoff MR, Beineke P, Daniels SE, Wingrove JA, Tingley WG, et al. Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients. Ann Intern Med. 2010;153:425-434.
    • (2010) Ann Intern Med , vol.153 , pp. 425-434
    • Rosenberg, S.1    Elashoff, M.R.2    Beineke, P.3    Daniels, S.E.4    Wingrove, J.A.5    Tingley, W.G.6
  • 38
    • 79955077801 scopus 로고    scopus 로고
    • Revisiting the technical validation of tumour biomarker assays: How to open a Pandora's box
    • Marchiò C, Dowsett M, Reis-Filho JS. Revisiting the technical validation of tumour biomarker assays: how to open a Pandora's box. BMC Med. 2011;9:41.
    • (2011) BMC Med , vol.9 , pp. 41
    • Marchiò, C.1    Dowsett, M.2    Reis-Filho, J.S.3
  • 39
    • 77952745604 scopus 로고    scopus 로고
    • Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures
    • Chen J, Sam L, Huang Y, Lee Y, Li J, Liu Y, et al. Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. J Biomed Inform. 2010;43:385-396.
    • (2010) J Biomed Inform , vol.43 , pp. 385-396
    • Chen, J.1    Sam, L.2    Huang, Y.3    Lee, Y.4    Li, J.5    Liu, Y.6
  • 40
    • 79960559668 scopus 로고    scopus 로고
    • Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease
    • Azuaje F, Zheng H, Camargo A, Wang H. Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease. J Biomed Inform. 2011;44:637-647.
    • (2011) J Biomed Inform , vol.44 , pp. 637-647
    • Azuaje, F.1    Zheng, H.2    Camargo, A.3    Wang, H.4
  • 41
    • 80053235012 scopus 로고    scopus 로고
    • Computationally generated cardiac biomarkers for risk stratification after acute coronary syndrome
    • Syed Z, Stultz CM, Scirica BM, Guttag JV. Computationally generated cardiac biomarkers for risk stratification after acute coronary syndrome. Sci Transl Med. 2011;3:102ra95.
    • (2011) Sci Transl Med , vol.3
    • Syed, Z.1    Stultz, C.M.2    Scirica, B.M.3    Guttag, J.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.