Molecular Mobility in Cells Examined with Optical Methods

Protein Trafficking in Neurons

Volumn , Issue , 2007, Pages 3-27

  Waxham Neal, M ^a  

^a UNIVERSITY OF TEXAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84882844073     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-012369437-9/50003-7     Document Type: Chapter

References (51)

1. Axelrod D., Thompson N.L., Burghardt T.P. Total internal reflection fluorescent microscopy. J. Microsc. 1983, 129:19-28. Pt 1.
2. Bacia K., Majoul I.V., Schwille P. Probing the endocytic pathway in live cells using dual-color fluorescence cross-correlation analysis. Biophys. J. 2002, 83:1184-1193.
3. Bacia K., Schwille P. A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy. Methods 2003, 29:74-85.
4. Berg H.C. Random walks in biology 1993, Princeton University Press.
5. Burke N.V., Han W., Li D., Takimoto K., Watkins S.C., Levitan E.S. Neuronal peptide release is limited by secretory granule mobility. Neuron 1997, 19:1095-1102.
6. Chen Y., Muller J.D., Berland K.M., Gratton E. Fluorescence fluctuation spectroscopy. Methods 1999, 19:234-252.
7. Chen Y., Muller J.D., Berland K.M., Gratton E. Fluorescence fluctuation spectroscopy. Methods 1999, 19:234-252.
8. Chen Y., Muller J.D., So P.T., Gratton E. The photon counting histogram in fluorescence fluctuation spectroscopy. Biophys. J. 1999, 77:553-567.
9. Choquet D., Triller A. The role of receptor diffusion in the organization of the postsynaptic membrane. Nat. Rev. Neurosci. 2003, 4:251-265.
10. Cluzel P., Surette M., Leibler S. An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science 2000, 287:1652-1655.
11. Crank J. The mathematics of diffusion 1956, Clarendon Press, Princeton.
12. Dauty E., Verkman A.S. Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: Measurement by fluorescence correlation spectroscopy. J. Mol. Recognit. 2004, 17:441-447.
13. Denk W., Strickler J.H., Webb W.W. Two-photon laser scanning fluorescence microscopy. Science 1990, 248:73-76.
14. Elson E.L. Fluorescence correlation spectroscopy measures molecular transport in cells. Traffic. 2001, 2:789-796.
15. Fujiwara T., Ritchie K., Murakoshi H., Jacobson K., Kusumi A. Phospholipids undergo hop diffusion in compartmentalized cell membrane. J. Cell Biol. 2002, 157:1071-1081.
16. Gennerich A., Schild D. Anisotropic diffusion in mitral cell dendrites revealed by fluorescence correlation spectroscopy. Biophys. J. 2002, 83:510-522.
17. Gosch M., Rigler R. Fluorescence correlation spectroscopy of molecular motions and kinetics. Adv. Drug Deliv. Rev. 2005, 57:169-190.
18. Groc L., Heine M., Cognet L., Brickley K., Stephenson F.A., Lounis B., Choquet D. Differential activity-dependent regulation of the lateral mobilities of AMPA and NMDA receptors. Nat. Neurosci. 2004, 7:695-696.
19. Haustein E., Schwille P. Ultrasensitive investigations of biological systems by fluorescence correlation spectroscopy. Methods 2003, 29:153-166.
20. Heinze K.G., Jahnz M., Schwille P. Triple fluorescence coincidence analysis (TFCA): Direct analysis of ternary complex formation. Biophys. J. 2003, 84:472a-473a.
21. Heinze K.G., Rarbach M., Jahnz M., Schwille P. Two-photon fluorescence coincidence analysis: Rapid measurements of enzyme kinetics. Biophys. J. 2002, 83:1671-1681.
22. Hell S.W., Dyba M., Jakobs S. Concepts for nanoscale resolution in fluorescence microscopy. Curr. Opin. Neurobiol. 2004, 14:599-609.
23. Howard J. Mechanics of motor protein and the cytoskeleton 2001, Sinauer Associates, Inc., Sunderland.
24. Jordan R., Lemke E.A., Klingauf J. Visualization of synaptic vesicle movement in intact synaptic boutons using fluorescence fluctuation spectroscopy. Biophys. J. 2005, 89:2091-2102.
25. Kahya N., Wiersma D.A., Poolman B., Hoekstra D. Spatial organization of bacteriorhodopsin in model membranes. Light-induced mobility changes. J. Biol. Chem. 2002, 277:39304-39311.
26. Kim S.A., Heinze K.G., Bacia K., Waxham M.N., Schwille P. Two-photon cross-correlation analysis of intracellular reactions with variable stoichiometry. Biophys. J. 2005, 88:4319-4336.
27. Kim S.A., Heinze K.G., Waxham M.N., Schwille P. Intracellular calmodulin availability accessed with two-photon cross-correlation. Proc. Natl. Acad. Sci. U S A 2004, 101:105-110.
28. Kusumi A., Nakada C., Ritchie K., Murase K., Suzuki K., Murakoshi H., et al. Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: High-speed single-molecule tracking of membrane molecules. Annu. Rev. Biophys. Biomol. Struct. 2005, 34:351-378.
29. Larson D.R., Gosse J.A., Holowka D.A., Baird B.A., Webb W.W. Temporally resolved interactions between antigen-stimulated ige receptors and lyn kinase on living cells. J. Cell Biol. 2005, 171:527-536.
30. Lehninger A.L. Principles of biochemistry 1982, Worth Publishers, Inc., New York.
31. Lippincott-Schwartz J., Snapp E., Kenworthy A. Studying protein dynamics in living cells. Nat. Rev. Mol. Cell Biol. 2001, 2:444-456.
32. Luby-Phelps K. Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area. Microcompartmentation and phase separation in cytoplasm 2000, 189-221. Academic Press. H. Walter, D.E. Brooks, P.A. Srere (Eds.).
33. Luby-Phelps K., Taylor D.L., Lanni F. Probing the structure of cytoplasm. J. Cell Biol. 1986, 102:2015-2022.
34. Lukacs G.L., Haggie P., Seksek O., Lechardeur D., Freedman N., Verkman A.S. Size-dependent DNA Mobility in cytoplasm and nucleus. J. Biol. Chem. 2000, 275:1625-1629.
35. Marsh B.J., Mastronarde D.N., Buttle K.F., Howell K.E., Mcintosh J.R. Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography. Proc. Natl. Acad. Sci. U S A 2001, 98:2399-2406.
36. Meissner O., Haberlein H. Lateral mobility and specific binding to GABA(A) receptors on hippocampal neurons monitored by fluorescence correlation spectroscopy. Biochemistry 2003, 42:1667-1672.
37. Minton A.P. The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media. J. Biol. Chem. 2001, 276:10577-10580.
38. Palo K., Brand L., Eggeling C., Jager S., Kask P., Gall K. Fluorescence intensity and lifetime distribution analysis: Toward higher accuracy in fluorescence fluctuation spectroscopy. Biophys. J. 2002, 83:605-618.
39. Pick H., Preuss A.K., Mayer M., Wohland T., Hovius R., Vogel H. Monitoring expression and clustering of the ionotropic 5HT3 receptor in plasma membranes of live biological cells. Biochemistry 2003, 42:877-884.
40. Poo M., Cone R.A. Lateral diffusion of rhodopsin in the photoreceptor membrane. Nature 1974, 247:438-441.
41. Saffman P.G., Delbruck M. Brownian motion in biological membranes. Proc. Natl. Acad. Sci. U S A 1975, 72:3111-3113.
42. Schwille P., Haupts U., Maiti S., Webb W.W. Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one-and two-photon excitation. Biophys. J. 1999, 77:2251-2265.
43. Seksek O., Biwersi J., Verkman A.S. Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus. J. Cell Biol. 1997, 138:131-142.
44. Steyer J.A., Horstmann H., Almers W. Transport, docking and exocytosis of single secretory granules in live chromaffin cells. Nature 1997, 388:474-478.
45. Stryer L. Biochemistry 1988, W.H. Freeman and Co., London.
46. Terada S., Kinjo M., Hirokawa N. Oligomeric tubulin in large transporting complex is transported via kinesin in squid giant axons. Cell 2000, 103:141-155.
47. Verkman A.S. Solute and macromolecule diffusion in cellular aqueous compartments. Trends in Biochem. Sci. 2002, 27:27-33.
48. Weiss M. Challenges and artifacts in quantitative photobleaching experiments. Traffic 2004, 5:662-671.
49. Weiss M., Elsner M., Kartberg F., Nilsson T. Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells. Biophys. J. 2004, 87:3518-3524.
50. Zajchowski L.D., Robbins S.M. Lipid rafts and little caves. Compartmentalized signaling in membrane microdomains. Eur. J. Biochem. 2002, 269:737-752.
51. Zipfel W.R., Webb W.W. In vivo diffusion measurements using multiphoton excitation fluorescence photobleaching recovery and fluorescence correlation spectroscopy. Methods in cellular imaging 2001, 216-235. Oxford University Press, New York. A. Periasamy (Ed.).