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Volumn 4, Issue , 2013, Pages

Counting motifs in the human interactome

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TRANSCRIPTION FACTOR;

EID: 84882404379     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms3241     Document Type: Article
Times cited : (61)

References (35)
  • 1
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.-L. & Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5, 101-113 (2004
    • (2004) Nat. Rev. Genet , vol.5 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 2
    • 79952659846 scopus 로고    scopus 로고
    • Boosting signal-to-noise in complex biology: Prior knowledge is power
    • Ideker, T., Dutkowski, J. & Hood, L. Boosting signal-to-noise in complex biology: prior knowledge is power. Cell 144, 860-863 (2011
    • (2011) Cell , vol.144 , pp. 860-863
    • Ideker, T.1    Dutkowski, J.2    Hood, L.3
  • 4
    • 84882314332 scopus 로고    scopus 로고
    • Network medicine: A networkbased approach to human disease
    • Barabasi, A.-L., Gulbahce, N. & Loscalzo, J. Network medicine: a networkbased approach to human disease. Cell 144, 986-998 (2011
    • (2011) Cell , vol.144 , pp. 986-998
    • Barabasi, A.-L.1    Gulbahce, N.2    Loscalzo, J.3
  • 5
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004
    • (2004) Nature , vol.431 , pp. 931-945
  • 6
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., Mason, S. P., Barabasi, A.-L. & Oltvai, Z. N. Lethality and centrality in protein networks. Nature 411, 41-42 (2001
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.-L.3    Oltvai, Z.N.4
  • 7
    • 16344381521 scopus 로고    scopus 로고
    • Comparative genomics of centrality and essentiality in three eukaryotic protein- interaction networks
    • Hahn, M. W. & Kern, A. D. Comparative genomics of centrality and essentiality in three eukaryotic protein- interaction networks. Mol. Biol. Evol. 22, 803-806 (2004
    • (2004) Mol. Biol. Evol , vol.22 , pp. 803-806
    • Hahn, M.W.1    Kern, A.D.2
  • 8
    • 33745712594 scopus 로고    scopus 로고
    • Why do hubs tend to be essential in protein networks?
    • He, X. & Zhang, J. Why do hubs tend to be essential in protein networks? PLoS Genet. 2, e88 (2006
    • (2006) PLoS Genet , vol.2
    • He, X.1    Zhang, J.2
  • 9
    • 44349113144 scopus 로고    scopus 로고
    • Estimating the size of the human interactome
    • Stumpf, M. P. H. et al. Estimating the size of the human interactome. Proc. Natl Acad. Sci. USA 105, 6959-6964 (2008
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 6959-6964
    • Stumpf, M.P.H.1
  • 11
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: Simple building blocks of complex networks
    • Milo, R. et al. Network motifs: simple building blocks of complex networks. Science 298, 824-827 (2002
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1
  • 12
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng, M., Mehta, S., Sun, F. & Chen, T. Inferring domain-domain interactions from protein-protein interactions. Genome Res. 12, 1540-1548 (2002
    • (2002) Genome Res , vol.12 , pp. 1540-1548
    • Deng, M.1    Mehta, S.2    Sun, F.3    Chen, T.4
  • 13
    • 25144479967 scopus 로고    scopus 로고
    • Inferring protein-protein interactions through high-throughput interaction data from diverse organisms
    • Liu, Y., Liu, N. & Zhao, H. Inferring protein-protein interactions through high-throughput interaction data from diverse organisms. Bioinformatics 21, 3279-3285 (2005
    • (2005) Bioinformatics , vol.21 , pp. 3279-3285
    • Liu, Y.1    Liu, N.2    Zhao, H.3
  • 14
    • 76049100050 scopus 로고    scopus 로고
    • Missing and spurious interactions and the reconstruction of complex networks
    • Guimera, R. & Sales-Pardo, M. Missing and spurious interactions and the reconstruction of complex networks. Proc. Natl Acad. Sci. USA 106, 22073-22078 (2009
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 22073-22078
    • Guimera, R.1    Sales-Pardo, M.2
  • 15
    • 78650274124 scopus 로고    scopus 로고
    • New insights into protein-protein interaction data lead to increased estimates of the S. Cerevisiae interactome size
    • Sambourg, L. & Thierry-Mieg, N. New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size. BMC Bioinformatics 11, 605 (2010
    • (2010) BMC Bioinformatics , vol.11 , pp. 605
    • Sambourg, L.1    Thierry-Mieg, N.2
  • 16
    • 4444268694 scopus 로고    scopus 로고
    • Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
    • Kashtan, N., Itzkovitz, S., Milo, R. & Alon, U. Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. Bioinformatics 20, 1746-1758 (2004
    • (2004) Bioinformatics , vol.20 , pp. 1746-1758
    • Kashtan, N.1    Itzkovitz, S.2    Milo, R.3    Alon, U.4
  • 18
    • 0000207615 scopus 로고
    • On the strength of connectedness of a random graph
    • Erdos, P. & Renyi, A. On the strength of connectedness of a random graph. Acta Math Hung. 12, 261-267 (1960
    • (1960) Acta Math Hung , vol.12 , pp. 261-267
    • Erdos, P.1    Renyi, A.2
  • 19
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A.-L. & Albert, R. Emergence of scaling in random networks. Science 286, 509-512 (1999
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.-L.1    Albert, R.2
  • 20
    • 0242692460 scopus 로고    scopus 로고
    • Duplication models for biological networks
    • Chung, F., Lu, L., Dewey, T. G. & Galas, D. J. Duplication models for biological networks. J. Comput. Biol. 10, 677-687 (2003
    • (2003) J. Comput. Biol , Issue.10 , pp. 677-687
    • Chung, F.1    Lu, L.2    Dewey, T.G.3    Galas, D.J.4
  • 21
    • 12344273375 scopus 로고    scopus 로고
    • Modeling interactome: Scale-free or geometric?
    • Przulj, N., Corneil, D. G. & Jurisica, I. Modeling interactome: scale-free or geometric? Bioinformatics 20, 3508-3515 (2004
    • (2004) Bioinformatics , vol.20 , pp. 3508-3515
    • Przulj, N.1    Corneil, D.G.2    Jurisica, I.3
  • 22
    • 84866361701 scopus 로고    scopus 로고
    • Circuitry and dynamics of human transcription factor regulatory networks
    • Neph, S. et al. Circuitry and dynamics of human transcription factor regulatory networks. Cell 150, 1274-1286 (2012
    • (2012) Cell , vol.150 , pp. 1274-1286
    • Neph, S.1
  • 23
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu, H. et al. High-quality binary protein interaction map of the yeast interactome network. Science 322, 104-110 (2008
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1
  • 24
    • 58149218155 scopus 로고    scopus 로고
    • Empirically controlled mapping of the Caenorhabditis elegans protein-''protein interactome network
    • Simonis, N. et al. Empirically controlled mapping of the Caenorhabditis elegans protein-''protein interactome network. Nat. Methods 6, 47-54 (2009
    • (2009) Nat. Methods , vol.6 , pp. 47-54
    • Simonis, N.1
  • 25
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human protein-''protein interaction network
    • Rual, J. F. et al. Towards a proteome-scale map of the human protein-''protein interaction network. Nature 437, 1173-1178 (2005
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1
  • 26
    • 58149305794 scopus 로고    scopus 로고
    • An empirical framework for binary interactome mapping
    • Venkatesan, K. et al. An empirical framework for binary interactome mapping. Nat. Methods 6, 83-90 (2009
    • (2009) Nat. Methods , vol.6 , pp. 83-90
    • Venkatesan, K.1
  • 27
    • 84882292291 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Arabidopsis Interactome Mapping Consortium
    • Arabidopsis Interactome Mapping Consortium. Evidence for network evolution in an Arabidopsis interactome map. Science 333, 601-607 (2011
    • Science , vol.333 , Issue.601-607 , pp. 2011
  • 28
    • 25144498379 scopus 로고    scopus 로고
    • A human protein protein interaction network: A resource for annotating the proteome
    • Stelzl, U. et al. A human protein protein interaction network: a resource for annotating the proteome. Cell 122, 957-968 (2005
    • (2005) Cell , vol.122 , pp. 957-968
    • Stelzl, U.1
  • 29
    • 38549146907 scopus 로고    scopus 로고
    • DBD-taxonomically broad transcription factor predictions: New content and functionality
    • Database issue
    • Wilson, D. et al. DBD-taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Res. 36, Database issue D88-D92 (2008
    • (2008) Nucleic Acids Res , vol.36
    • Wilson, D.1
  • 30
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein protein interactions
    • von Mering, C. et al. Comparative assessment of large-scale data sets of protein protein interactions. Nature 417, 399-403 (2002
    • (2002) Nature , vol.417 , pp. 399-403
    • Von Mering, C.1
  • 32
    • 33847744247 scopus 로고    scopus 로고
    • How complete are current yeast and human protein-interaction networks?
    • Hart, G. T., Ramani, A. K. & Marcotte, E. M. How complete are current yeast and human protein-interaction networks? Genome Biol. 7, 120 (2006
    • (2006) Genome Biol , vol.7 , pp. 120
    • Hart, G.T.1    Ramani, A.K.2    Marcotte, E.M.3
  • 33
    • 33847064282 scopus 로고    scopus 로고
    • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    • Reguly, T. et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J. Biol. 5, 11 (2006
    • (2006) J. Biol , vol.5 , pp. 11
    • Reguly, T.1
  • 35
    • 82955188307 scopus 로고    scopus 로고
    • Approximating the number of network motifs
    • Gonen, M. & Shavitt, Y. Approximating the number of network motifs. Internet Math. 6, 349-372 (2010
    • (2010) Internet Math , vol.6 , pp. 349-372
    • Gonen, M.1    Shavitt, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.