Four-dimensional spatial nanometry of single particles in living cells using polarized quantum rods

Biophysical Journal

Volumn 105, Issue 3, 2013, Pages 555-564

  Watanabe, Tomonobu M ^a,b,c   Fujii, Fumihiko ^b   Jin, Takashi ^a,b   Umemoto, Eiji ^b   Miyasaka, Masayuki ^b   Fujita, Hideaki ^a,b   Yanagida, Toshio ^a,b  

^a RIKEN   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

QUANTUM DOT;

ANIMAL; ARTICLE; CHEMISTRY; EQUIPMENT; FLUORESCENCE IMAGING; MACROPHAGE; METABOLISM; METHODOLOGY; MOUSE; THREE DIMENSIONAL IMAGING;

ANIMALS; IMAGING, THREE-DIMENSIONAL; MACROPHAGES; MICE; OPTICAL IMAGING; QUANTUM DOTS;

EID: 84881408697     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2013.07.001     Document Type: Article

References (51)

1. P. Ellinger Fluorescence microscopy in biology Biol. Rev. Camb. Philos. Soc. 15 1940 323 347
2. J.W. Lichtman, and J.A. Conchello Fluorescence microscopy Nat. Methods 2 2005 910 919
3. E. Abbe Beiträge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung Arch. Mikr. Anat. 9 1873 413 468
4. R.E. Thompson, D.R. Larson, and W.W. Webb Precise nanometer localization analysis for individual fluorescent probes Biophys. J. 82 2002 2775 2783
5. A. Yildiz, and J.N. Forkey P.R. Selvin Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization Science 300 2003 2061 2065
6. H. Park, E. Toprak, and P.R. Selvin Single-molecule fluorescence to study molecular motors Q. Rev. Biophys. 40 2007 87 111
7. C. Kural, and H. Kim P.R. Selvin Kinesin and dynein move a peroxisome in vivo: a tug-of-war or coordinated movement? Science 308 2005 1469 1472
8. T.M. Watanabe, and H. Higuchi Stepwise movements in vesicle transport of HER2 by motor proteins in living cells Biophys. J. 92 2007 4109 4120
9. K. Gonda, and T.M. Watanabe H. Higuchi In vivo nano-imaging of membrane dynamics in metastatic tumor cells using quantum dots J. Biol. Chem. 285 2010 2750 2757
10. E. Toprak, and H. Balci P.R. Selvin Three-dimensional particle tracking via bifocal imaging Nano Lett. 7 2007 2043 2045
11. T.M. Watanabe, and T. Sato H. Higuchi Three-dimensional nanometry of vesicle transport in living cells using dual-focus imaging optics Biochem. Biophys. Res. Commun. 359 2007 1 7
12. P.A. Dalgarno, and H.I. Dalgarno A.H. Greenaway Multiplane imaging and three dimensional nanoscale particle tracking in biological microscopy Opt. Express 18 2010 877 884
13. S.R. Pavani, and M.A. Thompson W.E. Moerner Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function Proc. Natl. Acad. Sci. USA 106 2009 2995 2999
14. O. Shimomura, F.H. Johnson, and Y. Saiga Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea J. Cell. Comp. Physiol. 59 1962 223 239
15. R.Y. Tsien The green fluorescent protein Annu. Rev. Biochem. 67 1998 509 544
16. R. Nifosí, P. Amat, and V. Tozzini Variation of spectral, structural, and vibrational properties within the intrinsically fluorescent proteins family: a density functional study J. Comput. Chem. 28 2007 2366 2377
17. L. Song, and E.J. Hennink H.J. Tanke Photobleaching kinetics of fluorescein in quantitative fluorescence microscopy Biophys. J. 68 1995 2588 2600
18. L. Song, and C.A.G.O. Varma H.J. Tanke Influence of the triplet excited state on the photobleaching kinetics of fluorescein in microscopy Biophys. J. 70 1996 2959 2968
19. M.J. Murcia, and C.A. Naumann Biofunctionalization of fluorescent nanoparticles Nanotechnologies for the Life Sciences. 1 2007 1 39
20. P. Pierobon, and G. Cappello Quantum dots to tail single bio-molecules inside living cells Adv. Drug Deliv. Rev. 64 2012 167 178
21. M. Bruchez Jr., and M. Moronne A.P. Alivisatos Semiconductor nanocrystals as fluorescent biological labels Science 281 1998 2013 2016
22. W.C.W. Chan, and S. Nie Quantum dot bioconjugates for ultrasensitive nonisotopic detection Science 281 1998 2016 2018
23. D.M. Warshaw, and G.G. Kennedy K.M. Trybus Differential labeling of myosin V heads with quantum dots allows direct visualization of hand-over-hand processivity Biophys. J. 88 2005 L30 L32
24. M.M. Barroso Quantum dots in cell biology J. Histochem. Cytochem. 59 2011 237 251
25. H.S. Choi, and J.V. Frangioni Nanoparticles for biomedical imaging: fundamentals of clinical translation Mol. Imaging 9 2010 291 310
26. G.S. Harms, and M. Sonnleitner T. Schmidt Single-molecule anisotropy imaging Biophys. J. 77 1999 2864 2870
27. G. Weber Rotational Brownian motion and polarization of the fluorescence of solutions Adv. Protein Chem. 8 1953 415 459
28. A. Albrecht Polarizations and assignments of transitions: the method of photoselection J. Mol. Spectrosc. 6 1961 84 108
29. I. Sase, and H. Miyata K. Kinosita Jr. Axial rotation of sliding actin filaments revealed by single-fluorophore imaging Proc. Natl. Acad. Sci. USA 94 1997 5646 5650
30. J.N. Forkey, and M.E. Quinlan Y.E. Goldman Three-dimensional structural dynamics of myosin V by single-molecule fluorescence polarization Nature 422 2003 399 404
31. H. Mizuno, and C. Higashida N. Watanabe Rotational movement of the formin mDia1 along the double helical strand of an actin filament Science 331 2011 80 83
32. J.T. Hu, and Li Ls A.P. Alivisatos Linearly polarized emission from colloidal semiconductor quantum rods Science 292 2001 2060 2063
33. X.G. Peng, and L. Manna A.P. Alivisatos Shape control of CdSe nanocrystals Nature 404 2000 59 61
34. S. Deka, and A. Quarta L. Manna CdSe/CdS/ZnS double shell nanorods with high photoluminescence efficiency and their exploitation as biolabeling probes J. Am. Chem. Soc. 131 2009 2948 2958
35. M. Ohmachi, and Y. Komori T. Yanagida Fluorescence microscopy for simultaneous observation of 3D orientation and movement and its application to quantum rod-tagged myosin V Proc. Natl. Acad. Sci. USA 109 2012 5294 5298
36. T. Jin, and F. Fujii Y. Yoshioka Preparation and characterization of highly fluorescent, glutathione-coated near infrared quantum dots for in vivo fluorescence imaging Int. J. Mol. Sci. 9 2008 2044 2061
37. W.W. Yu, and E. Chang V.L. Colvin Forming biocompatible and nonaggregated nanocrystals in water using amphiphilic polymers J. Am. Chem. Soc. 129 2007 2871 2879
38. D. Magde, E.L. Elson, and W.W. Webb Fluorescence correlation spectroscopy. I. Conceptual basis and theory Biopolymers 13 1974 1 27
39. R.F. Heuff, J.L. Swift, and D.T. Cramb Fluorescence correlation spectroscopy using quantum dots: advances, challenges and opportunities Phys. Chem. Chem. Phys. 9 2007 1870 1880
40. D.K. Tiwari, and S. Tanaka T. Jin Synthesis and characterization of anti-HER2 antibody conjugated CdSe/CdZnS quantum dots for fluorescence imaging of breast cancer cells Sensors (Basel) 9 2009 9332 9364
41. H.P. Kao, and A.S. Verkman Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position Biophys. J. 67 1994 1291 1300
42. L. Holtzer, T. Meckel, and T. Schmidt Nanometric three-dimensional tracking of individual quantum dots in cells Appl. Phys. Lett. 90 2007 053902
43. R.L. Silverstein, and M. Febbraio CD36, a scavenger receptor involved in immunity, metabolism, angiogenesis, and behavior Sci. Signal. 2 2009 1 8
44. C. Sönnichsen, and A.P. Alivisatos Gold nanorods as novel nonbleaching plasmon-based orientation sensors for polarized single-particle microscopy Nano Lett. 5 2005 301 304
45. A.V. Failla, and H. Qian A.J. Meixner Orientational imaging of subwavelength Au particles with higher order laser modes Nano Lett. 6 2006 1374 1378
46. W.S. Chang, and J.W. Ha S. Link Plasmonic nanorod absorbers as orientation sensors Proc. Natl. Acad. Sci. USA 107 2010 2781 2786
47. G. Wang, and W. Sun N. Fang Resolving rotational motions of nano-objects in engineered environments and live cells with gold nanorods and differential interference contrast microscopy J. Am. Chem. Soc. 132 2010 16417 16422
48. A. Kusumi, Y. Sako, and M. Yamamoto Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells Biophys. J. 65 1993 2021 2040
49. D.S. Martin, M.B. Forstner, and J.A. Käs Apparent subdiffusion inherent to single particle tracking Biophys. J. 83 2002 2109 2117
50. M.J. Saxton Single-particle tracking: the distribution of diffusion coefficients Biophys. J. 72 1997 1744 1753
51. R.J. Cherry Membrane protein dynamics: rotational dynamics P.L. Yeagle, The Structure of Biological Membranes 2005 CRC Press Boca Raton, FL 389 410