-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
80052319576
-
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea
-
Amselem J., Cuomo C.A., van Kan J.A.L., Viaud M., Benito E.P., Couloux A., Coutinho P.M., de Vries R.P., Dyer P.S., Fillinger S., Fournier E., Gout L., Hahn M., Kohn L., Lapalu N., Plummer K.M., Pradier J.-M., Quévillon E., Sharon A., Simon A., ten Have A., Tudzynski B., Tudzynski P., Wincker P., Andrew M., Anthouard V., Beever R.E., Beffa R., Benoit I., Bouzid O., Brault B., Chen Z., Choquer M., Collémare J., Cotton P., Danchin E.G., Da Silva C., Gautier A., Giraud C., Giraud T., Gonzalez C., Grossetete S., Güldener U., Henrissat B., Howlett B.J., Kodira C., Kretschmer M., Lappartient A., Leroch M., Levis C., Mauceli E., Neuvéglise C., Oeser B., Pearson M., Poulain J., Poussereau N., Quesneville H., Rascle C., Schumacher J., Ségurens B., Sexton A., Silva E., Sirven C., Soanes D.M., Talbot N.J., Templeton M., Yandava C., Yarden O., Zeng Q., Rollins J.A., Lebrun M.-H., Dickman M. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet. 2011, 7:e1002230.
-
(2011)
PLoS Genet.
, vol.7
-
-
Amselem, J.1
Cuomo, C.A.2
van Kan, J.A.L.3
Viaud, M.4
Benito, E.P.5
Couloux, A.6
Coutinho, P.M.7
de Vries, R.P.8
Dyer, P.S.9
Fillinger, S.10
Fournier, E.11
Gout, L.12
Hahn, M.13
Kohn, L.14
Lapalu, N.15
Plummer, K.M.16
Pradier, J.-M.17
Quévillon, E.18
Sharon, A.19
Simon, A.20
ten Have, A.21
Tudzynski, B.22
Tudzynski, P.23
Wincker, P.24
Andrew, M.25
Anthouard, V.26
Beever, R.E.27
Beffa, R.28
Benoit, I.29
Bouzid, O.30
Brault, B.31
Chen, Z.32
Choquer, M.33
Collémare, J.34
Cotton, P.35
Danchin, E.G.36
Da Silva, C.37
Gautier, A.38
Giraud, C.39
Giraud, T.40
Gonzalez, C.41
Grossetete, S.42
Güldener, U.43
Henrissat, B.44
Howlett, B.J.45
Kodira, C.46
Kretschmer, M.47
Lappartient, A.48
Leroch, M.49
Levis, C.50
Mauceli, E.51
Neuvéglise, C.52
Oeser, B.53
Pearson, M.54
Poulain, J.55
Poussereau, N.56
Quesneville, H.57
Rascle, C.58
Schumacher, J.59
Ségurens, B.60
Sexton, A.61
Silva, E.62
Sirven, C.63
Soanes, D.M.64
Talbot, N.J.65
Templeton, M.66
Yandava, C.67
Yarden, O.68
Zeng, Q.69
Rollins, J.A.70
Lebrun, M.-H.71
Dickman, M.72
more..
-
3
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova M., Gascuel O. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 2006, 55:539-552.
-
(2006)
Syst. Biol.
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
4
-
-
0028895417
-
Exon recognition in vertebrate splicing
-
Berget S.M. Exon recognition in vertebrate splicing. J. Biol. Chem. 1995, 270:2411-2414.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2411-2414
-
-
Berget, S.M.1
-
6
-
-
62449296880
-
Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron
-
Borah S., Wong A.C., Steitz J.A. Drosophila hnRNP A1 homologs Hrp36/Hrp38 enhance U2-type versus U12-type splicing to regulate alternative splicing of the prospero twintron. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:2577-2582.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 2577-2582
-
-
Borah, S.1
Wong, A.C.2
Steitz, J.A.3
-
7
-
-
24944502751
-
Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides
-
Brown D.W., Cheung F., Proctor R.H., Butchko R.A.E., Zheng L., Lee Y., Utterback T., Smith S., Feldblyum T., Glenn A.E., Plattner R.D., Kendra D.F., Town C.D., Whitelaw C.A. Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides. Fungal Genet. Biol. 2005, 42:848-861.
-
(2005)
Fungal Genet. Biol.
, vol.42
, pp. 848-861
-
-
Brown, D.W.1
Cheung, F.2
Proctor, R.H.3
Butchko, R.A.E.4
Zheng, L.5
Lee, Y.6
Utterback, T.7
Smith, S.8
Feldblyum, T.9
Glenn, A.E.10
Plattner, R.D.11
Kendra, D.F.12
Town, C.D.13
Whitelaw, C.A.14
-
8
-
-
22144486964
-
Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements
-
Burnette J.M., Miyamoto-Sato E., Schaub M.A., Conklin J., Lopez A.J. Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements. Genetics 2005, 170:661-674.
-
(2005)
Genetics
, vol.170
, pp. 661-674
-
-
Burnette, J.M.1
Miyamoto-Sato, E.2
Schaub, M.A.3
Conklin, J.4
Lopez, A.J.5
-
9
-
-
69249232118
-
Endogenous mechanisms for the origins of spliceosomal introns
-
Catania F., Gao X., Scofield D.G. Endogenous mechanisms for the origins of spliceosomal introns. J. Hered. 2009, 100:591-596.
-
(2009)
J. Hered.
, vol.100
, pp. 591-596
-
-
Catania, F.1
Gao, X.2
Scofield, D.G.3
-
10
-
-
0017688583
-
An amazing sequence arrangement at 5' ends of adenovirus-2 messenger RNA
-
Chow L.T., Gelinas R.E., Broker T.R., Roberts R.T. An amazing sequence arrangement at 5' ends of adenovirus-2 messenger RNA. Cell 1977, 12:1-8.
-
(1977)
Cell
, vol.12
, pp. 1-8
-
-
Chow, L.T.1
Gelinas, R.E.2
Broker, T.R.3
Roberts, R.T.4
-
11
-
-
0026111327
-
Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene
-
Copertino D.W., Hallick R.B. Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene. EMBO J. 1991, 10:433-442.
-
(1991)
EMBO J.
, vol.10
, pp. 433-442
-
-
Copertino, D.W.1
Hallick, R.B.2
-
12
-
-
0027377879
-
Group II and group III intron of twintrons: potential relationships to nuclear pre-mRNA introns
-
Copertino D.W., Hallick R.B. Group II and group III intron of twintrons: potential relationships to nuclear pre-mRNA introns. Trends Biochem. Sci. 1993, 18:467-471.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 467-471
-
-
Copertino, D.W.1
Hallick, R.B.2
-
13
-
-
0028272134
-
A group III twintron encoding a maturase-like gene excises through lariat intermediates
-
Copertino D.W., Van Hook F.W., Hall E.T., Jenkins K.P., Hallick R.B. A group III twintron encoding a maturase-like gene excises through lariat intermediates. Nucleic Acids Res. 1994, 22:1029-1036.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1029-1036
-
-
Copertino, D.W.1
Van Hook, F.W.2
Hall, E.T.3
Jenkins, K.P.4
Hallick, R.B.5
-
14
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo A., Gribaldo S. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol. Biol. 2010, 10:210.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
15
-
-
84870564943
-
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
-
Curtis C.A., Tanifuji G., Burki F., Gruber A., Irimia M., Maruyama S., Arias M.C., Ball S.G., Gile G.H., Hirakawa Y., Hopkins J.F., Kuo A., Rensing S.A., Schmutz J., Symeonidi A., Elias M., Eveleigh R.J.M., Herman E.K., Klute M.J., Nakayama T., Oborník M., Reyes-Prieto A., Armbrust E.V., Aves S.J., Beiko R.G., Coutinho P., Dacks J.B., Durnford D.G., Fast N.M., Green B.R., Grisdale C.J., Hempel F., Henrissat B., Höppner M.P., Ishida K.-I., Kim E., Kořený L., Kroth P.G., Liu Y., Malik S.-B., Maier U.G., McRose D., Mock T., Neilson J.A.D., Onodera N.T., Poole A.M., Pritham E.J., Richards T.A., Rocap G., Roy S.W., Sarai C., Schaack S., Shirato S., Slamovits C.H., Spencer D.F., Suzuki S., Worden A.Z., Zauner S., Barry K., Bell C., Bharti A.K., Crow J.A., Grimwood J., Kramer R., Lindquist E., Lucas S., Salamov A., McFadden G.I., Lane C.E., Keeling P.J., Gray M.W., Grigoriev I.V., Archibald J.M. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature 2012, 492:59-65.
-
(2012)
Nature
, vol.492
, pp. 59-65
-
-
Curtis, C.A.1
Tanifuji, G.2
Burki, F.3
Gruber, A.4
Irimia, M.5
Maruyama, S.6
Arias, M.C.7
Ball, S.G.8
Gile, G.H.9
Hirakawa, Y.10
Hopkins, J.F.11
Kuo, A.12
Rensing, S.A.13
Schmutz, J.14
Symeonidi, A.15
Elias, M.16
Eveleigh, R.J.M.17
Herman, E.K.18
Klute, M.J.19
Nakayama, T.20
Oborník, M.21
Reyes-Prieto, A.22
Armbrust, E.V.23
Aves, S.J.24
Beiko, R.G.25
Coutinho, P.26
Dacks, J.B.27
Durnford, D.G.28
Fast, N.M.29
Green, B.R.30
Grisdale, C.J.31
Hempel, F.32
Henrissat, B.33
Höppner, M.P.34
Ishida, K.-I.35
Kim, E.36
Kořený, L.37
Kroth, P.G.38
Liu, Y.39
Malik, S.-B.40
Maier, U.G.41
McRose, D.42
Mock, T.43
Neilson, J.A.D.44
Onodera, N.T.45
Poole, A.M.46
Pritham, E.J.47
Richards, T.A.48
Rocap, G.49
Roy, S.W.50
Sarai, C.51
Schaack, S.52
Shirato, S.53
Slamovits, C.H.54
Spencer, D.F.55
Suzuki, S.56
Worden, A.Z.57
Zauner, S.58
Barry, K.59
Bell, C.60
Bharti, A.K.61
Crow, J.A.62
Grimwood, J.63
Kramer, R.64
Lindquist, E.65
Lucas, S.66
Salamov, A.67
McFadden, G.I.68
Lane, C.E.69
Keeling, P.J.70
Gray, M.W.71
Grigoriev, I.V.72
Archibald, J.M.73
more..
-
16
-
-
0031975280
-
A maturase-encoding group III twintron is conserved in deeply rooted euglenoid species: are group III introns the chicken or the egg?
-
Doetsch N.A., Thompson M.D., Hallick R.B. A maturase-encoding group III twintron is conserved in deeply rooted euglenoid species: are group III introns the chicken or the egg?. Mol. Biol. Evol. 1998, 15:76-86.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 76-86
-
-
Doetsch, N.A.1
Thompson, M.D.2
Hallick, R.B.3
-
17
-
-
0035145616
-
Comparison of psbK operon organization and group III intron content in chloroplast genomes of 12 Euglenoid species
-
Doetsch N.A., Thompson M.D., Favreau M.R., Hallick R.B. Comparison of psbK operon organization and group III intron content in chloroplast genomes of 12 Euglenoid species. Mol. Gen. Genet. 2001, 264:682-690.
-
(2001)
Mol. Gen. Genet.
, vol.264
, pp. 682-690
-
-
Doetsch, N.A.1
Thompson, M.D.2
Favreau, M.R.3
Hallick, R.B.4
-
18
-
-
0345580612
-
Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
-
Einvik C., Elde M., Johansen S. Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. J. Biotechnol. 1998, 64:63-74.
-
(1998)
J. Biotechnol.
, vol.64
, pp. 63-74
-
-
Einvik, C.1
Elde, M.2
Johansen, S.3
-
19
-
-
77955154599
-
Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles
-
de Longevialle A.F., Small I.D., Lurin C. Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles. Mol. Plant 2010, 3:691-705.
-
(2010)
Mol. Plant
, vol.3
, pp. 691-705
-
-
de Longevialle, A.F.1
Small, I.D.2
Lurin, C.3
-
20
-
-
84862174834
-
The genome portal of the department of energy joint genome institute
-
Grigoriev I.V., Nordberg H., Shabalov I., Aerts A., Cantor M., Goodstein D., Kuo A., Minovitsky S., Nikitin R., Ohm R.A., Otillar R., Poliakov A., Ratnere I., Riley R., Smirnova T., Rokhsar D., Dubchak I. The genome portal of the department of energy joint genome institute. Nucleic Acids Res. 2012, 40:D26-D32.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Grigoriev, I.V.1
Nordberg, H.2
Shabalov, I.3
Aerts, A.4
Cantor, M.5
Goodstein, D.6
Kuo, A.7
Minovitsky, S.8
Nikitin, R.9
Ohm, R.A.10
Otillar, R.11
Poliakov, A.12
Ratnere, I.13
Riley, R.14
Smirnova, T.15
Rokhsar, D.16
Dubchak, I.17
-
21
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S., Dufayard J.-F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
22
-
-
84875588195
-
The mtDNA rns gene landscape in the Ophiostomatales and other fungal taxa: twintrons, introns, and intron-encoded proteins
-
Hafez M., Majer A., Sethuraman J., Rudski S.M., Michel F., Hausner G. The mtDNA rns gene landscape in the Ophiostomatales and other fungal taxa: twintrons, introns, and intron-encoded proteins. Fungal Genet. Biol. 2013, 53:71-83.
-
(2013)
Fungal Genet. Biol.
, vol.53
, pp. 71-83
-
-
Hafez, M.1
Majer, A.2
Sethuraman, J.3
Rudski, S.M.4
Michel, F.5
Hausner, G.6
-
23
-
-
0027176391
-
Complete DNA sequence of Euglena gracilis chloroplast DNA
-
Hallick R.B., Hong L., Drager R.G., Favreau M.R., Monfort A., Orsat B., Spielmann A., Stutz E. Complete DNA sequence of Euglena gracilis chloroplast DNA. Nucleic Acids Res. 1993, 21:3537-3544.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3537-3544
-
-
Hallick, R.B.1
Hong, L.2
Drager, R.G.3
Favreau, M.R.4
Monfort, A.5
Orsat, B.6
Spielmann, A.7
Stutz, E.8
-
25
-
-
47249165090
-
Origin of introns by 'intronization' of exonic sequences
-
Irimia M., Rukov J.L., Penny D., Vinther J., Garcia-Fernandez J., Roy S.W. Origin of introns by 'intronization' of exonic sequences. Trends Genet. 2008, 24:378-381.
-
(2008)
Trends Genet.
, vol.24
, pp. 378-381
-
-
Irimia, M.1
Rukov, J.L.2
Penny, D.3
Vinther, J.4
Garcia-Fernandez, J.5
Roy, S.W.6
-
26
-
-
0030917343
-
In vivo mobility of a group I twintron in nuclear ribosomal RNA of the myxomycete Didymium iridis
-
Johansen S., Elde M., Vader A., Haugen P., Haugli K., Haugli F. In vivo mobility of a group I twintron in nuclear ribosomal RNA of the myxomycete Didymium iridis. Mol. Microbiol. 1997, 24:737-745.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 737-745
-
-
Johansen, S.1
Elde, M.2
Vader, A.3
Haugen, P.4
Haugli, K.5
Haugli, F.6
-
27
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 2008, 9:286-298.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
28
-
-
69249211050
-
Intron-dominated genomes of early ancestors of eukaryotes
-
Koonin E.V. Intron-dominated genomes of early ancestors of eukaryotes. J. Hered. 2009, 100:618-623.
-
(2009)
J. Hered.
, vol.100
, pp. 618-623
-
-
Koonin, E.V.1
-
29
-
-
6344229798
-
Introns and splicing elements of five diverse fungi
-
Kupfer D.M., Drabenstot S.D., Buchanan K.L., Lai H., Zhu H., Dyer D.W., Roe B.A., Murphy J.W. Introns and splicing elements of five diverse fungi. Eukaryot. Cell 2004, 3:1088-1100.
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 1088-1100
-
-
Kupfer, D.M.1
Drabenstot, S.D.2
Buchanan, K.L.3
Lai, H.4
Zhu, H.5
Dyer, D.W.6
Roe, B.A.7
Murphy, J.W.8
-
31
-
-
0034177911
-
Pre-mRNA splicing in higher plants
-
Lorković Z.J., Wieczorek Kirk D.A., Lambermon M.H.L., Filipowicz W. Pre-mRNA splicing in higher plants. Trends Plant Sci. 2000, 5:160-167.
-
(2000)
Trends Plant Sci.
, vol.5
, pp. 160-167
-
-
Lorković, Z.J.1
Wieczorek Kirk, D.A.2
Lambermon, M.H.L.3
Filipowicz, W.4
-
32
-
-
78649915274
-
Characterization of the Aspergillus nidulans biotin biosynthetic gene cluster and use of the bioDA gene as a new transformation marker
-
Magliano P., Flipphi M., Sanglard D., Poirier Y. Characterization of the Aspergillus nidulans biotin biosynthetic gene cluster and use of the bioDA gene as a new transformation marker. Fungal Genet. Biol. 2011, 48:208-215.
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 208-215
-
-
Magliano, P.1
Flipphi, M.2
Sanglard, D.3
Poirier, Y.4
-
33
-
-
0028848837
-
Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad
-
Maier U.-G., Rensing S.A., Igloi G.L., Maerz M. Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad. Mol. Gen. Genet. 1995, 246:128-131.
-
(1995)
Mol. Gen. Genet.
, vol.246
, pp. 128-131
-
-
Maier, U.-G.1
Rensing, S.A.2
Igloi, G.L.3
Maerz, M.4
-
34
-
-
0002067986
-
Problems and challenges in the cellulose to cellulase fermentation
-
Mandels M., Andreotti R.E. Problems and challenges in the cellulose to cellulase fermentation. Process Biochem. 1978, 13:6-13.
-
(1978)
Process Biochem.
, vol.13
, pp. 6-13
-
-
Mandels, M.1
Andreotti, R.E.2
-
35
-
-
33745136089
-
Naked corals: skeleton loss in scleractinia
-
Medina M., Collins A.G., Takaoka T.L., Kuehl J.V., Boore J.L. Naked corals: skeleton loss in scleractinia. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:9096-9100.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9096-9100
-
-
Medina, M.1
Collins, A.G.2
Takaoka, T.L.3
Kuehl, J.V.4
Boore, J.L.5
-
36
-
-
77954729219
-
Mechanisms used for genomic proliferation by thermophilic group II introns
-
Mohr G., Ghanem E., Lambowitz A.M. Mechanisms used for genomic proliferation by thermophilic group II introns. PLoS Biol. 2010, 8:e1000391.
-
(2010)
PLoS Biol.
, vol.8
-
-
Mohr, G.1
Ghanem, E.2
Lambowitz, A.M.3
-
37
-
-
33845873071
-
Spliceosomal small nuclear RNA genes in 11 insect genomes
-
Mount S.M., Gotea V., Lin C.-F., Hernandez K., Makałowski W. Spliceosomal small nuclear RNA genes in 11 insect genomes. RNA 2007, 13:5-14.
-
(2007)
RNA
, vol.13
, pp. 5-14
-
-
Mount, S.M.1
Gotea, V.2
Lin, C.-F.3
Hernandez, K.4
Makałowski, W.5
-
38
-
-
0036923541
-
Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1
-
Nakamura Y., Kaneko T., Sato S., Ikeuchi M., Katoh H., Sasamoto S., Watanabe A., Iriguchi M., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S. Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res. 2002, 9:123-130.
-
(2002)
DNA Res.
, vol.9
, pp. 123-130
-
-
Nakamura, Y.1
Kaneko, T.2
Sato, S.3
Ikeuchi, M.4
Katoh, H.5
Sasamoto, S.6
Watanabe, A.7
Iriguchi, M.8
Kawashima, K.9
Kimura, T.10
Kishida, Y.11
Kiyokawa, C.12
Kohara, M.13
Matsumoto, M.14
Matsuno, A.15
Nakazaki, N.16
Shimpo, S.17
Sugimoto, M.18
Takeuchi, C.19
Yamada, M.20
Tabata, S.21
more..
-
39
-
-
85011941669
-
Group I introns. Moving in new directions
-
Nielsen H., Johansen S.D. Group I introns. Moving in new directions. RNA Biol. 2009, 6:375-383.
-
(2009)
RNA Biol.
, vol.6
, pp. 375-383
-
-
Nielsen, H.1
Johansen, S.D.2
-
40
-
-
24644492436
-
An mRNA is capped by a 2',5' lariat catalyzed by a group I-like ribozyme
-
Nielsen H., Westhof E., Johansen S. An mRNA is capped by a 2',5' lariat catalyzed by a group I-like ribozyme. Science 2005, 309:1584-1587.
-
(2005)
Science
, vol.309
, pp. 1584-1587
-
-
Nielsen, H.1
Westhof, E.2
Johansen, S.3
-
41
-
-
3042625932
-
A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: in vitro self-splicing and genetic evidence for maturase activity
-
Odom O.W., Shenkenberg D.L., Garcia J.A., Herrin D.L. A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: in vitro self-splicing and genetic evidence for maturase activity. RNA 2004, 10:1097-1107.
-
(2004)
RNA
, vol.10
, pp. 1097-1107
-
-
Odom, O.W.1
Shenkenberg, D.L.2
Garcia, J.A.3
Herrin, D.L.4
-
42
-
-
38049040845
-
Intrasplicing coordinates alternative first exons with alternative splicing in the protein 4.1R gene
-
Parra M.K., Tan J.S., Mohandas N., Conboy J.G. Intrasplicing coordinates alternative first exons with alternative splicing in the protein 4.1R gene. EMBO J. 2008, 27:122-131.
-
(2008)
EMBO J.
, vol.27
, pp. 122-131
-
-
Parra, M.K.1
Tan, J.S.2
Mohandas, N.3
Conboy, J.G.4
-
43
-
-
84864023850
-
Deep intron elements mediate nested splicing events at consecutive AG dinucleotides to regulate alternative 3' splice site choice in vertebrate 4.1 genes
-
Parra M.K., Gallagher T.L., Amacher S.L., Mohandas N., Conboy J.G. Deep intron elements mediate nested splicing events at consecutive AG dinucleotides to regulate alternative 3' splice site choice in vertebrate 4.1 genes. Mol. Cell. Biol. 2012, 32:2044-2053.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 2044-2053
-
-
Parra, M.K.1
Gallagher, T.L.2
Amacher, S.L.3
Mohandas, N.4
Conboy, J.G.5
-
44
-
-
0345169036
-
Splicing double: insights from the second spliceosome
-
Patel A.A., Steitz J.A. Splicing double: insights from the second spliceosome. Nat. Rev. Mol. Cell Biol. 2003, 4:960-970.
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 960-970
-
-
Patel, A.A.1
Steitz, J.A.2
-
45
-
-
49249124795
-
The genetics of Aspergillus nidulans
-
Pontecorvo G., Roper J.A., Hemmons L.M., MacDonald K.D., Bufton A.W.J. The genetics of Aspergillus nidulans. Adv. Genet. 1953, 5:141-238.
-
(1953)
Adv. Genet.
, vol.5
, pp. 141-238
-
-
Pontecorvo, G.1
Roper, J.A.2
Hemmons, L.M.3
MacDonald, K.D.4
Bufton, A.W.J.5
-
46
-
-
78651368865
-
Intron creation and DNA repair
-
Ragg H. Intron creation and DNA repair. Cell. Mol. Life Sci. 2011, 68:235-242.
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 235-242
-
-
Ragg, H.1
-
47
-
-
0037743892
-
Retroids in archaea: phylogeny and lateral origins
-
Rest J.S., Mindell D.P. Retroids in archaea: phylogeny and lateral origins. Mol. Biol. Evol. 2003, 20:1134-1142.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1134-1142
-
-
Rest, J.S.1
Mindell, D.P.2
-
48
-
-
68549111145
-
The spliceosome: a self-organized macromolecular machine in the nucleus?
-
Rino J., Carmo-Fonseca M. The spliceosome: a self-organized macromolecular machine in the nucleus?. Trends Cell. Biol. 2009, 19:375-384.
-
(2009)
Trends Cell. Biol.
, vol.19
, pp. 375-384
-
-
Rino, J.1
Carmo-Fonseca, M.2
-
49
-
-
84859729407
-
Origin and evolution of spliceosomal introns
-
Rogozin I.B., Carmel L., Csuros M., Koonin E.V. Origin and evolution of spliceosomal introns. Biol. Direct 2012, 7:11.
-
(2012)
Biol. Direct
, vol.7
, pp. 11
-
-
Rogozin, I.B.1
Carmel, L.2
Csuros, M.3
Koonin, E.V.4
-
50
-
-
0033781387
-
Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe
-
Romfo C.M., Alvarez C.J., van Heeckeren W.J., Webb C.J., Wise J.A. Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe. Mol. Cell. Biol. 2000, 20:7955-7970.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7955-7970
-
-
Romfo, C.M.1
Alvarez, C.J.2
van Heeckeren, W.J.3
Webb, C.J.4
Wise, J.A.5
-
51
-
-
59349107038
-
Mystery of intron gain: new data and new models
-
Roy S.W., Irimia M. Mystery of intron gain: new data and new models. Trends Genet. 2009, 25:67-73.
-
(2009)
Trends Genet.
, vol.25
, pp. 67-73
-
-
Roy, S.W.1
Irimia, M.2
-
52
-
-
84866329751
-
Genome evolution: where do new introns come from?
-
Roy S.W., Irimia M. Genome evolution: where do new introns come from?. Curr. Biol. 2012, 22:R529-R531.
-
(2012)
Curr. Biol.
, vol.22
-
-
Roy, S.W.1
Irimia, M.2
-
53
-
-
84869889758
-
The mtDNA rps3 locus has been invaded by a group I intron in some species of Grosmannia
-
Rudski S.M., Hausner G. The mtDNA rps3 locus has been invaded by a group I intron in some species of Grosmannia. Mycoscience 2012, 53:471-475.
-
(2012)
Mycoscience
, vol.53
, pp. 471-475
-
-
Rudski, S.M.1
Hausner, G.2
-
54
-
-
0002300557
-
Co-linearity of the gene with the polypeptide chain
-
Sarabhai A.S., Stretton A.O.W., Brenner S., Bolle A. Co-linearity of the gene with the polypeptide chain. Nature 1964, 201:13-17.
-
(1964)
Nature
, vol.201
, pp. 13-17
-
-
Sarabhai, A.S.1
Stretton, A.O.W.2
Brenner, S.3
Bolle, A.4
-
55
-
-
1342346504
-
An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes
-
Scamborova P., Wong A., Steitz J.A. An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes. Mol. Cell. Biol. 2004, 24:1855-1869.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1855-1869
-
-
Scamborova, P.1
Wong, A.2
Steitz, J.A.3
-
56
-
-
1342263796
-
Recent horizontal intron transfer to a chloroplast genome
-
Sheveleva E.V., Hallick R.B. Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res. 2004, 32:803-810.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 803-810
-
-
Sheveleva, E.V.1
Hallick, R.B.2
-
57
-
-
84875230031
-
Nested introns in an intron: evidence of multi-step splicing in a large intron of the human dystrophin pre-mRNA
-
Suzuki H., Kameyama T., Ohe K., Tsukahara T., Mayeda A. Nested introns in an intron: evidence of multi-step splicing in a large intron of the human dystrophin pre-mRNA. FEBS Lett. 2013, 587:555-561.
-
(2013)
FEBS Lett.
, vol.587
, pp. 555-561
-
-
Suzuki, H.1
Kameyama, T.2
Ohe, K.3
Tsukahara, T.4
Mayeda, A.5
-
58
-
-
0027968068
-
CLUSTAL-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
59
-
-
0028786887
-
Evidence for the late origin of introns in chloroplast genes from an evolutonary analysis of the genus Euglena
-
Thompson M.D., Copertino D.W., Thompson E., Favreau M.R., Hallick R.B. Evidence for the late origin of introns in chloroplast genes from an evolutonary analysis of the genus Euglena. Nucleic Acids Res. 1995, 23:4745-4752.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4745-4752
-
-
Thompson, M.D.1
Copertino, D.W.2
Thompson, E.3
Favreau, M.R.4
Hallick, R.B.5
-
60
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
Toor N., Keating K.S., Taylor S.D., Pyle A.M. Crystal structure of a self-spliced group II intron. Science 2008, 320:77-82.
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
61
-
-
44949111473
-
Group II introns break new boundaries: presence in a bilaterian's genome
-
Vallès Y., Halanych K.M., Boore J.L. Group II introns break new boundaries: presence in a bilaterian's genome. PLoS ONE 2008, 3:e1488.
-
(2008)
PLoS ONE
, vol.3
-
-
Vallès, Y.1
Halanych, K.M.2
Boore, J.L.3
-
62
-
-
84863723204
-
Birth of new spliceosomal introns in fungi by multiplication of introner-like elements
-
van der Burgt A., Severing E., de Wit P.J.G.M., Collemare J. Birth of new spliceosomal introns in fungi by multiplication of introner-like elements. Curr. Biol. 2012, 22:1260-1265.
-
(2012)
Curr. Biol.
, vol.22
, pp. 1260-1265
-
-
van der Burgt, A.1
Severing, E.2
de Wit, P.J.G.M.3
Collemare, J.4
-
63
-
-
77954676864
-
Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties
-
Vitikainen M., Arvas M., Pakula T., Oja M., Penttilä M., Saloheimo M. Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties. BMC Genom. 2010, 11:441.
-
(2010)
BMC Genom.
, vol.11
, pp. 441
-
-
Vitikainen, M.1
Arvas, M.2
Pakula, T.3
Oja, M.4
Penttilä, M.5
Saloheimo, M.6
-
64
-
-
0020560659
-
Close relationship between certain nuclear and mitochondrial introns. Implications for the mechanism of RNA splicing
-
Waring R.B., Scazzocchio C., Brown T.A., Davies R.W. Close relationship between certain nuclear and mitochondrial introns. Implications for the mechanism of RNA splicing. J. Mol. Biol. 1983, 167:595-605.
-
(1983)
J. Mol. Biol.
, vol.167
, pp. 595-605
-
-
Waring, R.B.1
Scazzocchio, C.2
Brown, T.A.3
Davies, R.W.4
-
65
-
-
0346505472
-
Ordered partitioning reveals extended splice-site consensus information
-
Weir M., Rice M. Ordered partitioning reveals extended splice-site consensus information. Genome Res. 2004, 14:67-78.
-
(2004)
Genome Res.
, vol.14
, pp. 67-78
-
-
Weir, M.1
Rice, M.2
-
66
-
-
78651184938
-
On the colinearity of gene structure and protein structure
-
Yanofsky C., Carlton B.C., Guest J.R., Helinski D.R., Henning U. On the colinearity of gene structure and protein structure. Proc. Natl. Acad. Sci. U.S.A. 1964, 51:266-272.
-
(1964)
Proc. Natl. Acad. Sci. U.S.A.
, vol.51
, pp. 266-272
-
-
Yanofsky, C.1
Carlton, B.C.2
Guest, J.R.3
Helinski, D.R.4
Henning, U.5
-
67
-
-
0029449864
-
The Euglena gracilis intron-encoded mat2 locus is interrupted by three additional group II introns
-
Zhang L., Jenkins K.P., Stutz E., Hallick R.B. The Euglena gracilis intron-encoded mat2 locus is interrupted by three additional group II introns. RNA 1995, 1:1079-1088.
-
(1995)
RNA
, vol.1
, pp. 1079-1088
-
-
Zhang, L.1
Jenkins, K.P.2
Stutz, E.3
Hallick, R.B.4
|