메뉴 건너뛰기




Volumn 29, Issue 8, 2013, Pages 363-369

How can we determine the molecular clock of malaria parasites?

Author keywords

Apicomplexa; Birds; Cospeciation; Host shifts; Mitochondrial DNA; Plasmodium; Rate calibration

Indexed keywords

CALIBRATION; FOSSIL; MALARIA; MOLECULAR CLOCK; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PLASMODIUM; REVIEW;

EID: 84880963227     PISSN: 14714922     EISSN: 14715007     Source Type: Journal    
DOI: 10.1016/j.pt.2013.03.011     Document Type: Review
Times cited : (44)

References (57)
  • 1
    • 0037373563 scopus 로고    scopus 로고
    • The modern molecular clock
    • Bromham L., Penny D. The modern molecular clock. Nat. Rev. Genet. 2003, 4:216-224.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 216-224
    • Bromham, L.1    Penny, D.2
  • 2
    • 22944437097 scopus 로고    scopus 로고
    • Molecular clocks: four decades of evolution
    • Kumar S. Molecular clocks: four decades of evolution. Nat. Rev. Genet. 2005, 6:654-662.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 654-662
    • Kumar, S.1
  • 3
    • 43049101093 scopus 로고    scopus 로고
    • Calibrating the avian molecular clock
    • Weir J.T., Schluter D. Calibrating the avian molecular clock. Mol. Ecol. 2008, 17:2321-2328.
    • (2008) Mol. Ecol. , vol.17 , pp. 2321-2328
    • Weir, J.T.1    Schluter, D.2
  • 4
    • 0032055555 scopus 로고    scopus 로고
    • Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates
    • Fleischer R.C., et al. Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Mol. Ecol. 1998, 7:533-545.
    • (1998) Mol. Ecol. , vol.7 , pp. 533-545
    • Fleischer, R.C.1
  • 5
    • 0032493346 scopus 로고    scopus 로고
    • The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome
    • Escalante A.A., et al. The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:8124-8129.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 8124-8129
    • Escalante, A.A.1
  • 6
    • 0037035378 scopus 로고    scopus 로고
    • Diversification and host switching in avian malaria parasites
    • Ricklefs R.E., Fallon S.M. Diversification and host switching in avian malaria parasites. Proc. R. Soc. Lond. B 2002, 269:885-892.
    • (2002) Proc. R. Soc. Lond. B , vol.269 , pp. 885-892
    • Ricklefs, R.E.1    Fallon, S.M.2
  • 7
    • 77954593415 scopus 로고    scopus 로고
    • A molecular clock for malaria parasites
    • Ricklefs R.E., Outlaw D.C. A molecular clock for malaria parasites. Science 2010, 329:226-229.
    • (2010) Science , vol.329 , pp. 226-229
    • Ricklefs, R.E.1    Outlaw, D.C.2
  • 8
    • 77956231682 scopus 로고    scopus 로고
    • Malaria parasite sequences from chimpanzee support the co-speciation hypothesis for the origin of virulent human malaria (Plasmodium falciparum)
    • Hughes A.L., Verra F. Malaria parasite sequences from chimpanzee support the co-speciation hypothesis for the origin of virulent human malaria (Plasmodium falciparum). Mol. Phylogenet. Evol. 2010, 57:135-143.
    • (2010) Mol. Phylogenet. Evol. , vol.57 , pp. 135-143
    • Hughes, A.L.1    Verra, F.2
  • 9
    • 77953801740 scopus 로고    scopus 로고
    • African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus
    • Duval L., et al. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:10561-10566.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 10561-10566
    • Duval, L.1
  • 10
    • 52449107804 scopus 로고    scopus 로고
    • Big bang in the evolution of extant malaria parasites
    • Hayakawa T., et al. Big bang in the evolution of extant malaria parasites. Mol. Biol. Evol. 2008, 25:2233-2239.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2233-2239
    • Hayakawa, T.1
  • 11
    • 80053897862 scopus 로고    scopus 로고
    • Timing the origin of human malarias: the lemur puzzle
    • Pacheco M.A., et al. Timing the origin of human malarias: the lemur puzzle. BMC Evol. Biol. 2011, 11:299.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 299
    • Pacheco, M.A.1
  • 12
    • 84860915111 scopus 로고    scopus 로고
    • Age of the last common ancestor of extant Plasmodium parasite lineages
    • Hayakawa T., et al. Age of the last common ancestor of extant Plasmodium parasite lineages. Gene 2012, 502:36-39.
    • (2012) Gene , vol.502 , pp. 36-39
    • Hayakawa, T.1
  • 13
    • 22444449419 scopus 로고    scopus 로고
    • Paleohaemoproteus burmacis gen., sp. n. (Haemosporida: Plasmodiidae) from an Early Cretaceous biting midge (Diptera: Ceratopogonidae)
    • Poinar G., Telford S.R. Paleohaemoproteus burmacis gen., sp. n. (Haemosporida: Plasmodiidae) from an Early Cretaceous biting midge (Diptera: Ceratopogonidae). Parasitology 2005, 131:79-84.
    • (2005) Parasitology , vol.131 , pp. 79-84
    • Poinar, G.1    Telford, S.R.2
  • 14
    • 21044443813 scopus 로고    scopus 로고
    • Plasmodium dominicana n. sp. (Plasmodiidae: Haemosporida) from tertiary Dominican amber
    • Poinar G. Plasmodium dominicana n. sp. (Plasmodiidae: Haemosporida) from tertiary Dominican amber. Syst. Parasitol. 2005, 61:47-52.
    • (2005) Syst. Parasitol. , vol.61 , pp. 47-52
    • Poinar, G.1
  • 15
    • 80051960846 scopus 로고    scopus 로고
    • Rerooting the evolutionary tree of malaria parasites
    • Outlaw D.C., Ricklefs R.E. Rerooting the evolutionary tree of malaria parasites. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:13183-13187.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 13183-13187
    • Outlaw, D.C.1    Ricklefs, R.E.2
  • 16
    • 0028113391 scopus 로고
    • Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences
    • Escalante A.A., Ayala F.J. Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:11373-11377.
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 11373-11377
    • Escalante, A.A.1    Ayala, F.J.2
  • 17
    • 0029002122 scopus 로고
    • Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene
    • Escalante A.A., et al. Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene. Mol. Biol. Evol. 1995, 12:616-626.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 616-626
    • Escalante, A.A.1
  • 18
    • 67249133505 scopus 로고    scopus 로고
    • A new malaria agent in African homonids
    • Ollomo B., et al. A new malaria agent in African homonids. PLoS Pathog. 2009, 5:e10000446.
    • (2009) PLoS Pathog. , vol.5
    • Ollomo, B.1
  • 19
    • 77957134091 scopus 로고    scopus 로고
    • Origin of the human malaria parasite Plasmodium falciparum in gorillas
    • Liu W., et al. Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature 2010, 467:420-425.
    • (2010) Nature , vol.467 , pp. 420-425
    • Liu, W.1
  • 20
    • 79955113834 scopus 로고    scopus 로고
    • A plethora of Plasmodium species in wild apes: a source of human infection?
    • Rayner J.C., et al. A plethora of Plasmodium species in wild apes: a source of human infection?. Trends Parasitol. 2011, 27:222-229.
    • (2011) Trends Parasitol. , vol.27 , pp. 222-229
    • Rayner, J.C.1
  • 21
    • 79956347502 scopus 로고    scopus 로고
    • A cautionary note concerning Plasmodium in apes
    • Valkiūnas G., et al. A cautionary note concerning Plasmodium in apes. Trends Parasitol. 2011, 27:231-232.
    • (2011) Trends Parasitol. , vol.27 , pp. 231-232
    • Valkiūnas, G.1
  • 23
    • 25444533019 scopus 로고    scopus 로고
    • Host switch leads to emergence of Plasmodium vivax malaria in humans
    • Mu J.B., et al. Host switch leads to emergence of Plasmodium vivax malaria in humans. Mol. Biol. Evol. 2005, 22:1686-1693.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1686-1693
    • Mu, J.B.1
  • 24
    • 42049083799 scopus 로고    scopus 로고
    • Saturation and base composition bias explain phylogenomic conflict in Plasmodium
    • Dávalos L.M., Perkins S.L. Saturation and base composition bias explain phylogenomic conflict in Plasmodium. Genomics 2008, 91:433-442.
    • (2008) Genomics , vol.91 , pp. 433-442
    • Dávalos, L.M.1    Perkins, S.L.2
  • 25
    • 77249106487 scopus 로고    scopus 로고
    • Comparative gene evolution in Haemosporidian (Apicomplexa) parasites of birds and mammals
    • Outlaw D.C., Ricklefs R.E. Comparative gene evolution in Haemosporidian (Apicomplexa) parasites of birds and mammals. Mol. Biol. Evol. 2010, 27:537-542.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 537-542
    • Outlaw, D.C.1    Ricklefs, R.E.2
  • 26
    • 79958767122 scopus 로고    scopus 로고
    • Phylogenetic analyses of malaria parasites and evolution of their exported proteins
    • Pick C., et al. Phylogenetic analyses of malaria parasites and evolution of their exported proteins. BMC Evol. Biol. 2011, 11:167.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 167
    • Pick, C.1
  • 27
    • 84856290479 scopus 로고    scopus 로고
    • Genome sequences reveal divergence times of malaria parasite lineages
    • Silva J.C., et al. Genome sequences reveal divergence times of malaria parasite lineages. Parasitology 2011, 138:1737-1749.
    • (2011) Parasitology , vol.138 , pp. 1737-1749
    • Silva, J.C.1
  • 28
    • 0035235722 scopus 로고    scopus 로고
    • Serological responses and immunity to superinfection with avian malaria in experimentally-infected Hawaii Amakihi
    • Atkinson C.T., et al. Serological responses and immunity to superinfection with avian malaria in experimentally-infected Hawaii Amakihi. J. Wildl. Dis. 2001, 37:20-27.
    • (2001) J. Wildl. Dis. , vol.37 , pp. 20-27
    • Atkinson, C.T.1
  • 29
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondria, chloroplast, and nuclear DNAs
    • Wolfe K.H., et al. Rates of nucleotide substitution vary greatly among plant mitochondria, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. U.S.A. 1987, 84:9054-9058.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1
  • 30
    • 0002557518 scopus 로고    scopus 로고
    • Molecular clocks and nucleotide substitution rates in higher plants
    • Plenum Press, M.K. Hecht (Ed.)
    • Gaut B.S. Molecular clocks and nucleotide substitution rates in higher plants. Evolutionary Biology 1998, 93-120. Plenum Press. M.K. Hecht (Ed.).
    • (1998) Evolutionary Biology , pp. 93-120
    • Gaut, B.S.1
  • 31
    • 0033955649 scopus 로고    scopus 로고
    • Examining rates and patterns of nucleotide substitution in plants
    • Muse S.V. Examining rates and patterns of nucleotide substitution in plants. Plant Mol. Biol. 2000, 42:25-43.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 25-43
    • Muse, S.V.1
  • 32
    • 0033593441 scopus 로고    scopus 로고
    • Atypically low rate of cytochrome b evolution in the scleractinian coral genus Acropora
    • van Oppen M.J.H., et al. Atypically low rate of cytochrome b evolution in the scleractinian coral genus Acropora. Proc. R. Soc. Lond. B 1999, 266:179-183.
    • (1999) Proc. R. Soc. Lond. B , vol.266 , pp. 179-183
    • van Oppen, M.J.H.1
  • 33
    • 56849114016 scopus 로고    scopus 로고
    • An overview of the phylogeny and diversity of eukaryotes
    • Baldauf S.L. An overview of the phylogeny and diversity of eukaryotes. J. Syst. Evol. 2008, 46:263-273.
    • (2008) J. Syst. Evol. , vol.46 , pp. 263-273
    • Baldauf, S.L.1
  • 35
    • 0033360956 scopus 로고    scopus 로고
    • Concerted evolution: molecular mechanism and biological implications
    • Liao D. Concerted evolution: molecular mechanism and biological implications. Am. J. Hum. Genet. 1999, 64:24-30.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 24-30
    • Liao, D.1
  • 36
    • 56049093886 scopus 로고    scopus 로고
    • The evolutionary rate of duplicated genes under concerted evolution
    • Mano S., Innan H. The evolutionary rate of duplicated genes under concerted evolution. Genetics 2008, 180:493-505.
    • (2008) Genetics , vol.180 , pp. 493-505
    • Mano, S.1    Innan, H.2
  • 38
    • 41049117759 scopus 로고    scopus 로고
    • A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches
    • Martinsen E.S., et al. A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches. Mol. Phylogenet. Evol. 2008, 47:261-273.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 261-273
    • Martinsen, E.S.1
  • 39
    • 53149140277 scopus 로고    scopus 로고
    • Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes
    • Bertone M.A., et al. Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes. Syst. Parasitol. 2008, 33:668-687.
    • (2008) Syst. Parasitol. , vol.33 , pp. 668-687
    • Bertone, M.A.1
  • 40
    • 0012737422 scopus 로고
    • The incrimination of arthropods as vectors of disease
    • In Proceedings of the 11th International Congress on Entomology, Wein, Austria, 1960
    • Barnett, H.C. (1962) The incrimination of arthropods as vectors of disease. In Proceedings of the 11th International Congress on Entomology, Wein, Austria, 1960 2, 341-345.
    • (1962) , vol.2 , pp. 341-345
    • Barnett, H.C.1
  • 41
    • 0034617941 scopus 로고    scopus 로고
    • Host specificity in avian blood parasites: a study of Plasmodium and Haemoproteus mitochondrial DNA amplified from birds
    • Bensch S., et al. Host specificity in avian blood parasites: a study of Plasmodium and Haemoproteus mitochondrial DNA amplified from birds. Proc. R. Soc. Lond. B 2000, 267:1583-1589.
    • (2000) Proc. R. Soc. Lond. B , vol.267 , pp. 1583-1589
    • Bensch, S.1
  • 42
    • 38649102455 scopus 로고    scopus 로고
    • Multiple host-switching of Haemosporidia parasites in bats
    • Duval L., et al. Multiple host-switching of Haemosporidia parasites in bats. Malar. J. 2007, 6:157.
    • (2007) Malar. J. , vol.6 , pp. 157
    • Duval, L.1
  • 43
    • 1642344693 scopus 로고    scopus 로고
    • Evolutionary relationships, cospeciation, and host switching in avian malaria parasites
    • Ricklefs R.E., et al. Evolutionary relationships, cospeciation, and host switching in avian malaria parasites. Syst. Biol. 2004, 53:111-119.
    • (2004) Syst. Biol. , vol.53 , pp. 111-119
    • Ricklefs, R.E.1
  • 44
    • 0242584415 scopus 로고    scopus 로고
    • Island and taxon effects in parasitism revisited: avian malaria in the Lesser Antilles
    • Fallon S.M., et al. Island and taxon effects in parasitism revisited: avian malaria in the Lesser Antilles. Evolution 2003, 57:606-615.
    • (2003) Evolution , vol.57 , pp. 606-615
    • Fallon, S.M.1
  • 45
    • 1442332721 scopus 로고    scopus 로고
    • Temporal stability of insular avian malarial parasite communities
    • Fallon S.M., et al. Temporal stability of insular avian malarial parasite communities. Proc. R. Soc. Lond. B 2004, 271:493-500.
    • (2004) Proc. R. Soc. Lond. B , vol.271 , pp. 493-500
    • Fallon, S.M.1
  • 46
    • 81055155907 scopus 로고    scopus 로고
    • Recent synchronous radiation of a living fossil
    • Nagalingum N.S., et al. Recent synchronous radiation of a living fossil. Science 2011, 334:796-799.
    • (2011) Science , vol.334 , pp. 796-799
    • Nagalingum, N.S.1
  • 47
    • 33845585115 scopus 로고    scopus 로고
    • Diversification of Neoaves: integration of molecular sequence data and fossils
    • Ericson P.G.P., et al. Diversification of Neoaves: integration of molecular sequence data and fossils. Biol. Lett. 2006, 2:543-547.
    • (2006) Biol. Lett. , vol.2 , pp. 543-547
    • Ericson, P.G.P.1
  • 48
    • 9644276781 scopus 로고    scopus 로고
    • Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region
    • Beadell J.S., et al. Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region. Mol. Ecol. 2004, 13:3829-3844.
    • (2004) Mol. Ecol. , vol.13 , pp. 3829-3844
    • Beadell, J.S.1
  • 49
    • 41049114264 scopus 로고    scopus 로고
    • Within-host speciation of malaria parasites
    • Pérez-Tris J., et al. Within-host speciation of malaria parasites. PLoS ONE 2007, 2:e235.
    • (2007) PLoS ONE , vol.2
    • Pérez-Tris, J.1
  • 50
    • 26944460739 scopus 로고    scopus 로고
    • Community relationships of avian malaria parasites in Southern Missouri
    • Ricklefs R.E., et al. Community relationships of avian malaria parasites in Southern Missouri. Ecol. Monogr. 2005, 75:543-559.
    • (2005) Ecol. Monogr. , vol.75 , pp. 543-559
    • Ricklefs, R.E.1
  • 51
    • 33644606488 scopus 로고    scopus 로고
    • Inferring phylogeny despite incomplete lineage sorting
    • Maddison W.P., Knowles L.L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 2006, 55:21-30.
    • (2006) Syst. Biol. , vol.55 , pp. 21-30
    • Maddison, W.P.1    Knowles, L.L.2
  • 52
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • de Quieroz K. Species concepts and species delimitation. Syst. Biol. 2007, 56:879-886.
    • (2007) Syst. Biol. , vol.56 , pp. 879-886
    • de Quieroz, K.1
  • 53
    • 84860012571 scopus 로고    scopus 로고
    • The origin of malarial parasites in orangutans
    • Pacheco M.A., et al. The origin of malarial parasites in orangutans. PLoS ONE 2012, 7:e34990.
    • (2012) PLoS ONE , vol.7
    • Pacheco, M.A.1
  • 54
    • 49749105586 scopus 로고    scopus 로고
    • A wind density model to quantify the airborne spread of Culicoides species during north-west Europe bluetongue epidemic, 2006
    • Hendrickx G., et al. A wind density model to quantify the airborne spread of Culicoides species during north-west Europe bluetongue epidemic, 2006. Prev. Vet. Med. 2008, 87:162-181.
    • (2008) Prev. Vet. Med. , vol.87 , pp. 162-181
    • Hendrickx, G.1
  • 55
    • 0037372985 scopus 로고    scopus 로고
    • The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree rates
    • Howell N., et al. The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree rates. Am. J. Hum. Genet. 2003, 72:659-670.
    • (2003) Am. J. Hum. Genet. , vol.72 , pp. 659-670
    • Howell, N.1
  • 56
    • 79959725029 scopus 로고    scopus 로고
    • Variation in genome-wide mutation rates within and between human families
    • Conrad D.F., et al. Variation in genome-wide mutation rates within and between human families. Nat. Genet. 2011, 43:712-714.
    • (2011) Nat. Genet. , vol.43 , pp. 712-714
    • Conrad, D.F.1
  • 57
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho S.Y.W., et al. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 2005, 22:1561-1568.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.