The evolutionary rate of duplicated genes under concerted evolution

Genetics

Volumn 180, Issue 1, 2008, Pages 493-505

  Mano, Shuhei ^a   Innan, Hideki ^b  

^a NAGOYA CITY UNIVERSITY   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONCEPTUAL FRAMEWORK; DIPLOIDY; EVOLUTIONARY RATE; GENE CONVERSION; GENE DUPLICATION; GENE LOCUS; GENE MUTATION; HAPLOTYPE; MULTIGENE FAMILY; MUTATION RATE; POPULATION GENETICS; POPULATION SIZE; PRIORITY JOURNAL; ALGORITHM; ALLELE; BIOLOGICAL MODEL; DUPLICATE GENE; EVOLUTION; GENE FREQUENCY; GENETIC SELECTION; MOLECULAR EVOLUTION; MUTATION; PROBABILITY;

ALGORITHMS; ALLELES; EVOLUTION; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENES, DUPLICATE; GENETICS, POPULATION; HAPLOTYPES; MODELS, BIOLOGICAL; MODELS, GENETIC; MULTIGENE FAMILY; MUTATION; PROBABILITY; SELECTION (GENETICS);

EID: 56049093886     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.087676     Document Type: Article

References (30)

1. ARNHEIM, N., 1983 Concerted evolution of multigene families, pp. 38-61 in Evolution of Genes and Proteins, edited by M. NEI and R. K. KOEHN. Sinauer Associates, Sunderland, MA.
2. CROW, J. F., and M. KIMURA, 1970 An Introduction to Population Genetics Theory. Harper & Row, New York.
3. DOVER, G., 1982 Molecular drive: a cohesive mode of species evolution. Nature 299: 111-117.
4. GALTIER, N., 2003 Gene conversion drives GC content evolution in mammalian histones. Trends Genet. 19: 65-68.
5. GANGLOFF, S., H. ZOU and R. ROTHSTEIN, 1996 Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast. EMBO J. 15: 1715-1725.
6. HILLIS, D. M., C. MORITZ, C. A. PORTER and R. J. BAKER, 1991 Evidence for biased gene conversion in concerted evolution of ribosomal dna. Science 251: 308-310.
7. INNAN, H., 2002 A method for estimating the mutation, gene conversion and recombination parameters in small multigene families. Genetics 161: 865-872.
8. INNAN, H., 2003a The coalescent and infinite-site model of a small multigene family. Genetics 163: 803-810.
9. INNAN, H., 2003b A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes. Proc. Natl. Acad. Sci. USA 100: 8793-8798.
10. JUKES, T. H., and D. R. CANTOR, 1969 Evolution of protein molecules, pp. 21-132 in Mammalian Protein Metabolism, edited by H. N. MUNRO. Academic Press, New York.
11. KIMURA, M., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
12. KIMURA, M., 1964 Diffusion models in population genetics. J. Appl. Probab. 1: 177-232.
13. KIMURA, M., 1983 The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge, UK.
14. KIMURA, M., and T. OHTA, 1969 The average number of generations until extinction of an individual mutant gene in a population. Genetics 63: 701-709.
15. LI, W.-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
16. MANO, S., 2007 Evolution of linkage disequilibrium of the founders in exponentially growing populations. Theor. Popul. Biol. 71: 95-108.
17. MARAIS, G., 2003 Biased gene conversion: implications for genome and sex evolution. Trends Genet. 19: 330-338.
18. MARUYAMA, T., 1971 On the fixation probability of mutant genes in a subdivided population. Genet. Res. 15: 221-225.
19. MORSE, P. M., and H. FESHBACH, 1953 Methods of Theoretical Physics. McGraw-Hill, New York.
20. NAGYLAKI, T., and T. D. PETES, 1982 Intrachromosomal gene conversion and the maintenance of sequence homogeneity among repeated genes. Genetics 100: 315-337.
21. OHTA, T., 1980 Evolution and Variation of Multigene Families. Springer-Verlag, Berlin/New York.
22. OHTA, T., 1983a On the evolution of multigene families. Theor. Popul. Biol. 23: 216-240.
23. OHTA, T., 1983b Time until fixation of a mutant belonging to a multigene family. Genet. Res. 41: 47-55.
24. OHTA, T., and M. KIMURA, 1969 Linkage disequilibrium at steady state determined by random genetic drift and recurrent mutation. Genetics 63: 229-238.
25. OKSENDAL, B., 2003 Stochastic Differential Equations: An Introduction With Applications, Ed. 6. Springer-Verlag, Berlin.
26. OLEINIK, O. A., and E. V. RADKEVIC, 1973 Second Order Equations With Nonnegative Characteristic Form. American Mathematical Society, Providence, RI.
27. TESHIMA, K. M., and H. INNAN, 2004 The effect of gene conversion on the divergence between duplicated genes. Genetics 166: 1553-1560.
28. THOMAS, J. H., 2006 Concerted evolution of two novel protein families in Caenorhabditis species. Genetics 172: 2269-2281.
29. WALSH, J. B., 1985 Interaction of selection and biased gene conversion in a multigene family. Proc. Natl. Acad. Sci. USA 82: 153-157.
30. ZUCKERKANDL, E., and L. PAULING, 1965 Evolutionary divergence and convergence in proteins, pp. 97-166 in Evolving Genes and Proteins, edited by V. BRYSON and H. J. VOGEL. Academic Press, New York.