-
1
-
-
84555173651
-
Molecular programming of B cell memory
-
McHeyzer-Williams M, Okitsu S, Wang N, McHeyzer-Williams L, (2012) Molecular programming of B cell memory. Nature reviews Immunology 12: 24-34.
-
(2012)
Nature Reviews Immunology
, vol.12
, pp. 24-34
-
-
McHeyzer-Williams, M.1
Okitsu, S.2
Wang, N.3
McHeyzer-Williams, L.4
-
2
-
-
0035839959
-
Mechanisms of chromosomal translocations in B cell lymphomas
-
Kuppers R, Dalla-Favera R, (2001) Mechanisms of chromosomal translocations in B cell lymphomas. Oncogene 20: 5580-5594.
-
(2001)
Oncogene
, vol.20
, pp. 5580-5594
-
-
Kuppers, R.1
Dalla-Favera, R.2
-
3
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, et al. (2000) Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102: 553-563.
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
-
6
-
-
4143071549
-
APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo
-
Liddament MT, Brown WL, Schumacher AJ, Harris RS, (2004) APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo. Current biology: CB 14: 1385-1391.
-
(2004)
Current Biology: CB
, vol.14
, pp. 1385-1391
-
-
Liddament, M.T.1
Brown, W.L.2
Schumacher, A.J.3
Harris, R.S.4
-
7
-
-
34249807921
-
DNA deamination in immunity: AID in the context of its APOBEC relatives
-
Conticello SG, Langlois MA, Yang Z, Neuberger MS, (2007) DNA deamination in immunity: AID in the context of its APOBEC relatives. Advances in immunology 94: 37-73.
-
(2007)
Advances in Immunology
, vol.94
, pp. 37-73
-
-
Conticello, S.G.1
Langlois, M.A.2
Yang, Z.3
Neuberger, M.S.4
-
8
-
-
66649099262
-
V-region mutation in vitro, in vivo, and in silico reveal the importance of the enzymatic properties of AID and the sequence environment
-
MacCarthy T, Kalis SL, Roa S, Pham P, Goodman MF, et al. (2009) V-region mutation in vitro, in vivo, and in silico reveal the importance of the enzymatic properties of AID and the sequence environment. Proceedings of the National Academy of Sciences of the United States of America 106: 8629-8634.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 8629-8634
-
-
MacCarthy, T.1
Kalis, S.L.2
Roa, S.3
Pham, P.4
Goodman, M.F.5
-
9
-
-
1542619234
-
Cutting edge: DGYW/WRCH is a better predictor of mutability at G:C bases in Ig hypermutation than the widely accepted RGYW/WRCY motif and probably reflects a two-step activation-induced cytidine deaminase-triggered process
-
Rogozin IB, Diaz M, (2004) Cutting edge: DGYW/WRCH is a better predictor of mutability at G:C bases in Ig hypermutation than the widely accepted RGYW/WRCY motif and probably reflects a two-step activation-induced cytidine deaminase-triggered process. Journal of immunology 172: 3382-3384.
-
(2004)
Journal of Immunology
, vol.172
, pp. 3382-3384
-
-
Rogozin, I.B.1
Diaz, M.2
-
10
-
-
0037926476
-
Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation
-
Pham P, Bransteitter R, Petruska J, Goodman MF, (2003) Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation. Nature 424: 103-107.
-
(2003)
Nature
, vol.424
, pp. 103-107
-
-
Pham, P.1
Bransteitter, R.2
Petruska, J.3
Goodman, M.F.4
-
12
-
-
77957659555
-
Cytidine deaminases: AIDing DNA demethylation?
-
Fritz EL, Papavasiliou FN, (2010) Cytidine deaminases: AIDing DNA demethylation? Genes & development 24: 2107-2114.
-
(2010)
Genes & Development
, vol.24
, pp. 2107-2114
-
-
Fritz, E.L.1
Papavasiliou, F.N.2
-
13
-
-
57649196594
-
DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
-
Rai K, Huggins IJ, James SR, Karpf AR, Jones DA, et al. (2008) DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135: 1201-1212.
-
(2008)
Cell
, vol.135
, pp. 1201-1212
-
-
Rai, K.1
Huggins, I.J.2
James, S.R.3
Karpf, A.R.4
Jones, D.A.5
-
14
-
-
77649104794
-
Reprogramming towards pluripotency requires AID-dependent DNA demethylation
-
Bhutani N, Brady JJ, Damian M, Sacco A, Corbel SY, et al. (2010) Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 463: 1042-1047.
-
(2010)
Nature
, vol.463
, pp. 1042-1047
-
-
Bhutani, N.1
Brady, J.J.2
Damian, M.3
Sacco, A.4
Corbel, S.Y.5
-
15
-
-
77249148019
-
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
-
Popp C, Dean W, Feng S, Cokus SJ, Andrews S, et al. (2010) Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 463: 1101-1105.
-
(2010)
Nature
, vol.463
, pp. 1101-1105
-
-
Popp, C.1
Dean, W.2
Feng, S.3
Cokus, S.J.4
Andrews, S.5
-
16
-
-
10644282845
-
Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming
-
Morgan HD, Dean W, Coker HA, Reik W, Petersen-Mahrt SK, (2004) Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. The Journal of biological chemistry 279: 52353-52360.
-
(2004)
The Journal of Biological Chemistry
, vol.279
, pp. 52353-52360
-
-
Morgan, H.D.1
Dean, W.2
Coker, H.A.3
Reik, W.4
Petersen-Mahrt, S.K.5
-
17
-
-
17444409344
-
Epigenetic reprogramming in mammals
-
Morgan HD, Santos F, Green K, Dean W, Reik W, (2005) Epigenetic reprogramming in mammals. Human molecular genetics 14 Spec No 1: R47-58.
-
(2005)
Human Molecular Genetics
, vol.14
, Issue.SPEC. NO. 1
-
-
Morgan, H.D.1
Santos, F.2
Green, K.3
Dean, W.4
Reik, W.5
-
18
-
-
77950955761
-
Origin of chromosomal translocations in lymphoid cancer
-
Nussenzweig A, Nussenzweig MC, (2010) Origin of chromosomal translocations in lymphoid cancer. Cell 141: 27-38.
-
(2010)
Cell
, vol.141
, pp. 27-38
-
-
Nussenzweig, A.1
Nussenzweig, M.C.2
-
19
-
-
77955875047
-
The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers
-
Zhang Y, Gostissa M, Hildebrand DG, Becker MS, Boboila C, et al. (2010) The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers. Advances in immunology 106: 93-133.
-
(2010)
Advances in Immunology
, vol.106
, pp. 93-133
-
-
Zhang, Y.1
Gostissa, M.2
Hildebrand, D.G.3
Becker, M.S.4
Boboila, C.5
-
20
-
-
16844381831
-
Mechanisms of B-cell lymphoma pathogenesis
-
Kuppers R, (2005) Mechanisms of B-cell lymphoma pathogenesis. Nature reviews Cancer 5: 251-262.
-
(2005)
Nature Reviews Cancer
, vol.5
, pp. 251-262
-
-
Kuppers, R.1
-
21
-
-
80053558376
-
Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells
-
Chiarle R, Zhang Y, Frock RL, Lewis SM, Molinie B, et al. (2011) Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147: 107-119.
-
(2011)
Cell
, vol.147
, pp. 107-119
-
-
Chiarle, R.1
Zhang, Y.2
Frock, R.L.3
Lewis, S.M.4
Molinie, B.5
-
22
-
-
80053502216
-
Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes
-
Klein IA, Resch W, Jankovic M, Oliveira T, Yamane A, et al. (2011) Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147: 95-106.
-
(2011)
Cell
, vol.147
, pp. 95-106
-
-
Klein, I.A.1
Resch, W.2
Jankovic, M.3
Oliveira, T.4
Yamane, A.5
-
23
-
-
39149099085
-
Two levels of protection for the B cell genome during somatic hypermutation
-
Liu M, Duke JL, Richter DJ, Vinuesa CG, Goodnow CC, et al. (2008) Two levels of protection for the B cell genome during somatic hypermutation. Nature 451: 841-845.
-
(2008)
Nature
, vol.451
, pp. 841-845
-
-
Liu, M.1
Duke, J.L.2
Richter, D.J.3
Vinuesa, C.G.4
Goodnow, C.C.5
-
24
-
-
0027440811
-
A novel ES cell line, TT2, with high germline-differentiating potency
-
Yagi T, Tokunaga T, Furuta Y, Nada S, Yoshida M, et al. (1993) A novel ES cell line, TT2, with high germline-differentiating potency. Analytical biochemistry 214: 70-76.
-
(1993)
Analytical Biochemistry
, vol.214
, pp. 70-76
-
-
Yagi, T.1
Tokunaga, T.2
Furuta, Y.3
Nada, S.4
Yoshida, M.5
-
25
-
-
77957951913
-
Whole-genome DNA methylation profiling using MethylCap-seq
-
Brinkman AB, Simmer F, Ma K, Kaan A, Zhu J, et al. (2010) Whole-genome DNA methylation profiling using MethylCap-seq. Methods 52: 232-236.
-
(2010)
Methods
, vol.52
, pp. 232-236
-
-
Brinkman, A.B.1
Simmer, F.2
Ma, K.3
Kaan, A.4
Zhu, J.5
-
26
-
-
77957937011
-
Quantitative comparison of genome-wide DNA methylation mapping technologies
-
Bock C, Tomazou EM, Brinkman AB, Muller F, Simmer F, et al. (2010) Quantitative comparison of genome-wide DNA methylation mapping technologies. Nature biotechnology 28: 1106-1114.
-
(2010)
Nature Biotechnology
, vol.28
, pp. 1106-1114
-
-
Bock, C.1
Tomazou, E.M.2
Brinkman, A.B.3
Muller, F.4
Simmer, F.5
-
27
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature methods 5: 621-628.
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
28
-
-
0344953578
-
Transcriptional analysis of the B cell germinal center reaction
-
Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, et al. (2003) Transcriptional analysis of the B cell germinal center reaction. Proceedings of the National Academy of Sciences of the United States of America 100: 2639-2644.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 2639-2644
-
-
Klein, U.1
Tu, Y.2
Stolovitzky, G.A.3
Keller, J.L.4
Haddad Jr., J.5
-
29
-
-
84866320759
-
Identification of human germinal center light and dark zone cells and their relationship to human B-cell lymphomas
-
Victora GD, Dominguez-Sola D, Holmes AB, Deroubaix S, Dalla-Favera R, et al. (2012) Identification of human germinal center light and dark zone cells and their relationship to human B-cell lymphomas. Blood 120: 2240-2248.
-
(2012)
Blood
, vol.120
, pp. 2240-2248
-
-
Victora, G.D.1
Dominguez-Sola, D.2
Holmes, A.B.3
Deroubaix, S.4
Dalla-Favera, R.5
-
30
-
-
0034264851
-
Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2)
-
Revy P, Muto T, Levy Y, Geissmann F, Plebani A, et al. (2000) Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2). Cell 102: 565-575.
-
(2000)
Cell
, vol.102
, pp. 565-575
-
-
Revy, P.1
Muto, T.2
Levy, Y.3
Geissmann, F.4
Plebani, A.5
-
31
-
-
79961011020
-
Activation-induced cytidine deaminase mediates central tolerance in B cells
-
Kuraoka M, Holl TM, Liao D, Womble M, Cain DW, et al. (2011) Activation-induced cytidine deaminase mediates central tolerance in B cells. Proceedings of the National Academy of Sciences of the United States of America 108: 11560-11565.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 11560-11565
-
-
Kuraoka, M.1
Holl, T.M.2
Liao, D.3
Womble, M.4
Cain, D.W.5
-
32
-
-
79960998395
-
Activation-induced cytidine deaminase (AID) is required for B-cell tolerance in humans
-
Meyers G, Ng YS, Bannock JM, Lavoie A, Walter JE, et al. (2011) Activation-induced cytidine deaminase (AID) is required for B-cell tolerance in humans. Proceedings of the National Academy of Sciences of the United States of America 108: 11554-11559.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 11554-11559
-
-
Meyers, G.1
Ng, Y.S.2
Bannock, J.M.3
Lavoie, A.4
Walter, J.E.5
-
33
-
-
10644229388
-
Methylation protects cytidines from AID-mediated deamination
-
Larijani M, Frieder D, Sonbuchner TM, Bransteitter R, Goodman MF, et al. (2005) Methylation protects cytidines from AID-mediated deamination. Molecular immunology 42: 599-604.
-
(2005)
Molecular Immunology
, vol.42
, pp. 599-604
-
-
Larijani, M.1
Frieder, D.2
Sonbuchner, T.M.3
Bransteitter, R.4
Goodman, M.F.5
-
34
-
-
84865329141
-
AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation
-
Nabel CS, Jia H, Ye Y, Shen L, Goldschmidt HL, et al. (2012) AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation. Nature chemical biology 8: 751-758.
-
(2012)
Nature Chemical Biology
, vol.8
, pp. 751-758
-
-
Nabel, C.S.1
Jia, H.2
Ye, Y.3
Shen, L.4
Goldschmidt, H.L.5
-
35
-
-
0037076967
-
AID enzyme-induced hypermutation in an actively transcribed gene in fibroblasts
-
Yoshikawa K, Okazaki IM, Eto T, Kinoshita K, Muramatsu M, et al. (2002) AID enzyme-induced hypermutation in an actively transcribed gene in fibroblasts. Science 296: 2033-2036.
-
(2002)
Science
, vol.296
, pp. 2033-2036
-
-
Yoshikawa, K.1
Okazaki, I.M.2
Eto, T.3
Kinoshita, K.4
Muramatsu, M.5
-
36
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
|