XAn epigenetic trap stabilizes singular olfactory receptor expression

Cell

Volumn 154, Issue 2, 2013, Pages 325-

  Lyons, David B ^a   Allen, William E ^c   Goh, Tracie ^b   Tsai, Lulu ^c   Barnea, Gilad ^c   Lomvardas, Stavros ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c BROWN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENYLATE CYCLASE; ADENYLYL CYCLASE 3; COMPLEMENTARY DNA; HISTONE DEMETHYLASE; HISTONE DEMETHYLASE LSD1; MESSENGER RNA; NEUROGENIN 1; OLFACTORY MARKER PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ALLELE; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CELL MATURATION; DOWN REGULATION; ENZYME ACTIVITY; EPIGENETICS; FEEDBACK SYSTEM; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ACTIVATION; GENE EXPRESSION; GENE SWITCHING; HYPOTHESIS; IMMUNOFLUORESCENCE; IMMUNOREACTIVITY; MOUSE; NERVE CELL DIFFERENTIATION; NONHUMAN; OLFACTORY BULB; OLFACTORY RECEPTOR; PRIORITY JOURNAL; PROGENY; RNA SEQUENCE; SENSORY NERVE CELL; SIGNAL TRANSDUCTION; STEM CELL; TRANSCRIPTION INITIATION; TRANSIENT EXPRESSION;

EID: 84880525997     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.06.039     Document Type: Article

References (61)

1. U. Alon Network motifs: theory and experimental approaches Nat. Rev. Genet. 8 2007 450 461
2. R. Anand, and R. Marmorstein Structure and mechanism of lysine-specific demethylase enzymes J. Biol. Chem. 282 2007 35425 35429
3. G. Barnea, S. O'Donnell, F. Mancia, X. Sun, A. Nemes, M. Mendelsohn, and R. Axel Odorant receptors on axon termini in the brain Science 304 2004 1468
4. L. Belluscio, G.H. Gold, A. Nemes, and R. Axel Mice deficient in G(olf) are anosmic Neuron 20 1998 69 81
5. L.J. Brunet, G.H. Gold, and J. Ngai General anosmia caused by a targeted disruption of the mouse olfactory cyclic nucleotide-gated cation channel Neuron 17 1996 681 693
6. L. Buck, and R. Axel A novel multigene family may encode odorant receptors: a molecular basis for odor recognition Cell 65 1991 175 187
7. A.T. Chesler, D.J. Zou, C.E. Le Pichon, Z.A. Peterlin, G.A. Matthews, X. Pei, M.C. Miller, and S. Firestein A G protein/cAMP signal cascade is required for axonal convergence into olfactory glomeruli Proc. Natl. Acad. Sci. USA 104 2007 1039 1044
8. A. Chess, I. Simon, H. Cedar, and R. Axel Allelic inactivation regulates olfactory receptor gene expression Cell 78 1994 823 834
9. G.B. Choi, D.D. Stettler, B.R. Kallman, S.T. Bhaskar, A. Fleischmann, and R. Axel Driving opposing behaviors with ensembles of piriform neurons Cell 146 2011 1004 1015
10. E.J. Clowney, A. Magklara, B.M. Colquitt, N. Pathak, R.P. Lane, and S. Lomvardas High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation Genome Res. 21 2011 1249 1259
11. E.J. Clowney, M.A. LeGros, C.P. Mosley, F.G. Clowney, E.C. Markenskoff-Papadimitriou, M. Myllys, G. Barnea, C.A. Larabell, and S. Lomvardas Nuclear aggregation of olfactory receptor genes governs their monogenic expression Cell 151 2012 724 737
12. J.A. Col, T. Matsuo, D.R. Storm, and I. Rodriguez Adenylyl cyclase-dependent axonal targeting in the olfactory system Development 134 2007 2481 2489
13. K. Eggan, K. Baldwin, M. Tackett, J. Osborne, J. Gogos, A. Chess, R. Axel, and R. Jaenisch Mice cloned from olfactory sensory neurons Nature 428 2004 44 49
14. N. Fukuda, K. Yomogida, M. Okabe, and K. Touhara Functional characterization of a mouse testicular olfactory receptor and its role in chemosensing and in regulation of sperm motility J. Cell Sci. 117 2004 5835 5845
15. G. Glusman, I. Yanai, I. Rubin, and D. Lancet The complete human olfactory subgenome Genome Res. 11 2001 685 702
16. A.P. Grollman, and M. Moriya Mutagenesis by 8-oxoguanine: an enemy within Trends Genet. 9 1993 246 249
17. E.A. Hallem, and J.R. Carlson Coding of odors by a receptor repertoire Cell 125 2006 143 160
18. S. Hayashi, and A.P. McMahon Efficient recombination in diverse tissues by a tamoxifen-inducible form of Cre: a tool for temporally regulated gene activation/inactivation in the mouse Dev. Biol. 244 2002 305 318
19. J.M. Hébert, and S.K. McConnell Targeting of cre to the Foxg1 (BF-1) locus mediates loxP recombination in the telencephalon and other developing head structures Dev. Biol. 222 2000 296 306
20. J. Hirota, and P. Mombaerts The LIM-homeodomain protein Lhx2 is required for complete development of mouse olfactory sensory neurons Proc. Natl. Acad. Sci. USA 101 2004 8751 8755
21. H. Hou, and H. Yu Structural insights into histone lysine demethylation Curr. Opin. Struct. Biol. 20 2010 739 748
22. T. Imai, M. Suzuki, and H. Sakano Odorant receptor-derived cAMP signals direct axonal targeting Science 314 2006 657 661
23. C.L. Iwema, and J.E. Schwob Odorant receptor expression as a function of neuronal maturity in the adult rodent olfactory system J. Comp. Neurol. 459 2003 209 222
24. R.J. Johnston Jr., Y. Otake, P. Sood, N. Vogt, R. Behnia, D. Vasiliauskas, E. McDonald, B. Xie, S. Koenig, and R. Wolf Interlocked feedforward loops control cell-type-specific Rhodopsin expression in the Drosophila eye Cell 145 2011 956 968
25. A. Klungland, and S. Bjelland Oxidative damage to purines in DNA: role of mammalian Ogg1 DNA Repair (Amst.) 6 2007 481 488
26. R.C. Krolewski, A. Packard, and J.E. Schwob Global expression profiling of globose basal cells and neurogenic progression within the olfactory epithelium J. Comp. Neurol. 521 2013 833 859
27. J.W. Lewcock, and R.R. Reed A feedback mechanism regulates monoallelic odorant receptor expression Proc. Natl. Acad. Sci. USA 101 2004 1069 1074
28. S. Lomvardas, G. Barnea, D.J. Pisapia, M. Mendelsohn, J. Kirkland, and R. Axel Interchromosomal interactions and olfactory receptor choice Cell 126 2006 403 413
29. A. Magklara, A. Yen, B.M. Colquitt, E.J. Clowney, W. Allen, E. Markenscoff-Papadimitriou, Z.A. Evans, P. Kheradpour, G. Mountoufaris, and C. Carey An epigenetic signature for monoallelic olfactory receptor expression Cell 145 2011 555 570
30. J.C. McIntyre, S.C. Bose, A.J. Stromberg, and T.S. McClintock Emx2 stimulates odorant receptor gene expression Chem. Senses 33 2008 825 837
31. E. Metzger, M. Wissmann, N. Yin, J.M. Müller, R. Schneider, A.H. Peters, T. Günther, R. Buettner, and R. Schüle LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription Nature 437 2005 436 439
32. J.S. Michaloski, P.A. Galante, and B. Malnic Identification of potential regulatory motifs in odorant receptor genes by analysis of promoter sequences Genome Res. 16 2006 1091 1098
33. P. Mombaerts, F. Wang, C. Dulac, S.K. Chao, A. Nemes, M. Mendelsohn, J. Edmondson, and R. Axel Visualizing an olfactory sensory map Cell 87 1996 675 686
34. K. Mori, and H. Sakano How is the olfactory map formed and interpreted in the mammalian brain? Annu. Rev. Neurosci. 34 2011 467 499
35. M.D. Muzumdar, B. Tasic, K. Miyamichi, L. Li, and L. Luo A global double-fluorescent Cre reporter mouse Genesis 45 2007 593 605
36. E. Nakamura, M.T. Nguyen, and S. Mackem Kinetics of tamoxifen-regulated Cre activity in mice using a cartilage-specific CreER(T) to assay temporal activity windows along the proximodistal limb skeleton Dev. Dyn. 2235 2006 2603 2612
37. S. Neph, A.B. Stergachis, A. Reynolds, R. Sandstrom, E. Borenstein, and J.A. Stamatoyannopoulos Circuitry and dynamics of human transcription factor regulatory networks Cell 150 2012 1274 1286
38. M.Q. Nguyen, Z. Zhou, C.A. Marks, N.J. Ryba, and L. Belluscio Prominent roles for odorant receptor coding sequences in allelic exclusion Cell 131 2007 1009 1017
39. M.D. Nickell, P. Breheny, A.J. Stromberg, and T.S. McClintock Genomics of mature and immature olfactory sensory neurons J. Comp. Neurol. 520 2012 2608 2629
40. Y. Niimura, and M. Nei Extensive gains and losses of olfactory receptor genes in mammalian evolution PLoS ONE 2 2007 e708
41. B. Perillo, M.N. Ombra, A. Bertoni, C. Cuozzo, S. Sacchetti, A. Sasso, L. Chiariotti, A. Malorni, C. Abbondanza, and E.V. Avvedimento DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression Science 319 2008 202 206
42. N.J. Ryba, and R. Tirindelli A novel GTP-binding protein gamma-subunit, G gamma 8, is expressed during neurogenesis in the olfactory and vomeronasal neuroepithelia J. Biol. Chem. 270 1995 6757 6767
43. S.W. Santoro, and C. Dulac The activity-dependent histone variant H2BE modulates the life span of olfactory neurons Elife 1 2012 e00070
44. S. Serizawa, K. Miyamichi, H. Nakatani, M. Suzuki, M. Saito, Y. Yoshihara, and H. Sakano Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse Science 302 2003 2088 2094
45. Y. Shi, F. Lan, C. Matson, P. Mulligan, J.R. Whetstine, P.A. Cole, R.A. Casero, and Y. Shi Histone demethylation mediated by the nuclear amine oxidase homolog LSD1 Cell 119 2004 941 953
46. Y.J. Shi, C. Matson, F. Lan, S. Iwase, T. Baba, and Y. Shi Regulation of LSD1 histone demethylase activity by its associated factors Mol. Cell 19 2005 857 864
47. B.M. Shykind, S.C. Rohani, S. O'Donnell, A. Nemes, M. Mendelsohn, Y. Sun, R. Axel, and G. Barnea Gene switching and the stability of odorant receptor gene choice Cell 117 2004 801 815
48. S.L. Sullivan, M.C. Adamson, K.J. Ressler, C.A. Kozak, and L.B. Buck The chromosomal distribution of mouse odorant receptor genes Proc. Natl. Acad. Sci. USA 93 1996 884 888
49. H. Tian, and M. Ma Activity plays a role in eliminating olfactory sensory neurons expressing multiple odorant receptors in the mouse septal organ Mol. Cell. Neurosci. 38 2008 484 488
50. D. Vasiliauskas, E.O. Mazzoni, S.G. Sprecher, K. Brodetskiy, R.J. Johnston Jr., P. Lidder, N. Vogt, A. Celik, and C. Desplan Feedback from rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors Nature 479 2011 108 112
51. F. Wang, A. Nemes, M. Mendelsohn, and R. Axel Odorant receptors govern the formation of a precise topographic map Cell 93 1998 47 60
52. J. Wang, K. Scully, X. Zhu, L. Cai, J. Zhang, G.G. Prefontaine, A. Krones, K.A. Ohgi, P. Zhu, and I. Garcia-Bassets Opposing LSD1 complexes function in developmental gene activation and repression programmes Nature 446 2007 882 887
53. M. Wissmann, N. Yin, J.M. Müller, H. Greschik, B.D. Fodor, T. Jenuwein, C. Vogler, R. Schneider, T. Günther, and R. Buettner Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression Nat. Cell Biol. 9 2007 347 353
54. J.M. Young, C. Friedman, E.M. Williams, J.A. Ross, L. Tonnes-Priddy, and B.J. Trask Different evolutionary processes shaped the mouse and human olfactory receptor gene families Hum. Mol. Genet. 11 2002 535 546
55. C.R. Yu, J. Power, G. Barnea, S. O'Donnell, H.E. Brown, J. Osborne, R. Axel, and J.A. Gogos Spontaneous neural activity is required for the establishment and maintenance of the olfactory sensory map Neuron 42 2004 553 566
56. X. Zhang, and S. Firestein The olfactory receptor gene superfamily of the mouse Nat. Neurosci. 5 2002 124 133
57. D.J. Zou, A.T. Chesler, C.E. Le Pichon, A. Kuznetsov, X. Pei, E.L. Hwang, and S. Firestein Absence of adenylyl cyclase 3 perturbs peripheral olfactory projections in mice J. Neurosci. 27 2007 6675 6683
58. S.H. Fuss, M. Omura, and P. Mombaerts Local and cis effects of the H element on expression of odorant receptor genes in mouse Cell 130 2007 373 384
59. M. Krzywinski, J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, S.J. Jones, and M.A. Marra Circos: an information aesthetic for comparative genomics Genome Res. 19 2009 1639 1645
60. M.Q. Nguyen, Z. Zhou, C.A. Marks, N.J. Ryba, and L. Belluscio Prominent roles for odorant receptor coding sequences in allelic exclusion Cell 131 2007 1009 1017
61. C. Trapnell, B.A. Williams, G. Pertea, A. Mortazavi, G. Kwan, M.J. van Baren, S.L. Salzberg, B.J. Wold, and L. Pachter Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Nat. Biotechnol. 28 2010 511 515