Dynamic functional connectivity: Promise, issues, and interpretations

NeuroImage

Volumn 80, Issue , 2013, Pages 360-378

  Hutchison, R Matthew ^a   Womelsdorf, Thilo ^b   Allen, Elena A ^c,d   Bandettini, Peter A ^e   Calhoun, Vince D ^d,f   Corbetta, Maurizio ^g,h   Della Penna, Stefania ^g   Duyn, Jeff H ⁱ   Glover, Gary H ^j   Gonzalez Castillo, Javier ^e   Handwerker, Daniel A ^e   Keilholz, Shella ^k   Kiviniemi, Vesa ^l   Leopold, David A ^e   de Pasquale, Francesco ^g   Sporns, Olaf ^m   Walter, Martin ^n,o   Chang, Catie ⁱ  

^a ROBARTS RESEARCH INSTITUTE   (Canada)

^b YORK UNIVERSITY   (Canada)

^c UNIVERSITY OF BERGEN   (Norway)

^d MIND RESEARCH NETWORK   (United States)

^e NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

^f UNIVERSITY OF NEW MEXICO   (United States)

^g UNIVERSITY OF CHIETI   (Italy)

^h WASHINGTON UNIVERSITY   (United States)

ⁱ NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE   (United States)

^j STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^k Emory University   (United States)

^l OULU UNIVERSITY HOSPITAL   (Finland)

^m INDIANA UNIVERSITY   (United States)

ⁿ OTTO VON GUERICKE UNIVERSITY   (Germany)

^o LEIBNIZ INSTITUTE FOR NEUROBIOLOGY   (Germany)

more..

Author keywords

Dynamics; Fluctuations; Functional connectivity; Functional MRI (fMRI); Resting state; Spontaneous activity

Indexed keywords

ALZHEIMER DISEASE; ARTICLE; BEHAVIOR; BOLD SIGNAL; BRAIN ELECTROPHYSIOLOGY; BRAIN FUNCTION; CENTRAL NERVOUS SYSTEM; CONSCIOUSNESS; CORRELATION ANALYSIS; DYNAMIC FUNCTIONAL CONNECTIVITY; ELECTRIC POTENTIAL; ELECTROENCEPHALOGRAM; FUNCTIONAL MAGNETIC RESONANCE IMAGING; FUNCTIONAL NEUROIMAGING; HUMAN; IMAGE PROCESSING; INDEPENDENT COMPONENT ANALYSIS; MAJOR DEPRESSION; NOISE; PRIORITY JOURNAL; RESTING STATE NETWORK; SCHIZOPHRENIA; STATISTICAL ANALYSIS; TIME FREQUENCY ANALYSIS; TIME SERIES ANALYSIS;

DYNAMICS; FLUCTUATIONS; FUNCTIONAL CONNECTIVITY; FUNCTIONAL MRI (FMRI); RESTING STATE; SPONTANEOUS ACTIVITY;

ANIMALS; BLOOD FLOW VELOCITY; BRAIN; CEREBROVASCULAR CIRCULATION; CONNECTOME; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MODELS, ANATOMIC; MODELS, NEUROLOGICAL; NERVE NET; SYNAPTIC TRANSMISSION;

EID: 84880333792     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.05.079     Document Type: Article

References (245)

1. Abou-Elseoud A., Starck T., Remes J., Nikkinen J., Tervonen O., Kiviniemi V. The effect of model order selection in group PICA. Hum. Brain Mapp. 2010, 31:1207-1216.
2. Adelstein J.S., Shehzad Z., Mennes M., Deyoung C.G., Zuo X.N., Kelly C., Margulies D.S., Bloomfield A., Gray J.R., Castellanos F.X., Milham M.P. Personality is reflected in the brain's intrinsic functional architecture. PLoS One 2011, 6:e27633.
3. Akam T., Kullmann D.M. Oscillations and filtering networks support flexible routing of information. Neuron 2010, 67:308-320.
4. Albert N.B., Robertson E.M., Miall R.C. The resting human brain and motor learning. Curr. Biol. 2009, 19:1023-1027.
5. Allen J.J., Cohen M.X. Deconstructing the "resting" state: exploring the temporal dynamics of frontal alpha asymmetry as an endophenotype for depression. Front. Hum. Neurosci. 2010, 4:232.
6. Allen E., Erhardt E., Calhoun V.D. Data visualization in the neurosciences: overcoming the curse of dimensionality. Neuron 2012, 74:603-608.
7. Allen E., Damaraju E., Plis S.M., Erhardt E., Eichele T., Calhoun V.D. Tracking whole-brain connectivity dynamics in the resting state. Cereb. Cortex 2013, (in press).
8. Allen E., Eichele T., Wu L., Calhoun V.D. EEG signatures of functional connectivity states. Human Brain Mapping, Seattle, WA 2013.
9. Amzica F., Steriade M. Disconnection of intracortical synaptic linkages disrupts synchronization of a slow oscillation. J. Neurosci. 1995, 15:4658-4677.
10. Arieli A., Sterkin A., Grinvald A., Aertsen A. Dynamics of ongoing activity: explanation of the large variability in evoked cortical responses. Science 1996, 273:1868-1871.
11. Barnes A., Bullmore E.T., Suckling J. Endogenous human brain dynamics recover slowly following cognitive effort. PLoS One 2009, 4:e6626.
12. Bassett D.S., Wymbs N.F., Porter M.A., Mucha P.J., Carlson J.M., Grafton S.T. Dynamic reconfiguration of human brain networks during learning. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:7641-7646.
13. Beall E.B., Lowe M.J. Isolating physiologic noise sources with independently determined spatial measures. Neuroimage 2007, 37:1286-1300.
14. Beckmann C.F., Smith S.M. Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans. Med. Imaging 2004, 23:137-152.
15. Beckmann C.F., DeLuca M., Devlin J.T., Smith S.M. Investigations into resting-state connectivity using independent component analysis. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2005, 360:1001-1013.
16. Behzadi Y., Restom K., Liau J., Liu T.T. A component based noise correction method (CompCor) for BOLD and perfusion based fMRI. Neuroimage 2007, 37:90-101.
17. Benchenane K., Peyrache A., Khamassi M., Tierney P., Gioanni Y., Battaglia F.P., Wiener S.I. Coherent theta oscillations and reorganization of spike timing in the hippocampal-prefrontal network upon learning. Neuron 2010, 66:921-936.
18. Bianciardi M., Fukunaga M., van Gelderen P., Horovitz S.G., de Zwart J.A., Duyn J.H. Modulation of spontaneous fMRI activity in human visual cortex by behavioral state. Neuroimage 2009, 45:160-168.
19. Birn R.M., Smith M.A., Jones T.B., Bandettini P.A. The respiration response function: the temporal dynamics of fMRI signal fluctuations related to changes in respiration. Neuroimage 2008, 40:644-654.
20. Biswal B., Yetkin F.Z., Haughton V.M., Hyde J.S. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn. Reson. Imaging 1995, 34:537-541.
21. Boly M., Balteau E., Schnakers C., Degueldre C., Moonen G., Luxen A., Phillips C., Peigneux P., Maquet P., Laureys S. Baseline brain activity fluctuations predict somatosensory perception in humans. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:12187-12192.
22. Bosman C.A., Schoffelen J.M., Brunet N., Oostenveld R., Bastos A.M., Womelsdorf T., Rubehn B., Stieglitz T., De Weerd P., Fries P. Attentional stimulus selection through selective synchronization between monkey visual areas. Neuron 2012, 75:875-888.
23. Böttger J., Schäfer A., Lohmann G., Villringer A., Margulies D.S. Three-dimensional mean-shift edge bundling for the visualization of functional connectivity in the brain. IEEE Trans. Vis. Comput. Graph. 2013, (in press).
24. Boubela R.N., Kalcher K., Huf W., Kronnerwetter C., Filzmoser P., Moser E. Beyond noise: using temporal ICA to extract meaningful information from high-frequency fMRI signal fluctuations during rest. Front. Hum. Neurosci. 2013, 7:168.
25. Boveroux P., Vanhaudenhuyse A., Bruno M.A., Noirhomme Q., Lauwick S., Luxen A., Degueldre C., Plenevaux A., Schnakers C., Phillips C., Brichant J.F., Bonhomme V., Maquet P., Greicius M.D., Laureys S., Boly M. Breakdown of within- and between-network resting state functional magnetic resonance imaging connectivity during propofol-induced loss of consciousness. Anesthesiology 2010, 113:1038-1053.
26. Bressler S.L., Menon V. Large-scale brain networks in cognition: emerging methods and principles. Trends Cogn. Sci. 2010, 14:277-290.
27. Brinker G., Bock C., Busch E., Krep H., Hossmann K.A., Hoehn-Berlage M. Simultaneous recording of evoked potentials and T2*-weighted MR images during somatosensory stimulation of rat. Magn. Reson. Med. 1999, 41:469-473.
28. Britz J., Van De Ville D., Michel C.M. BOLD correlates of EEG topography reveal rapid resting-state network dynamics. Neuroimage 2010, 52:1162-1170.
29. Brookes M.J., Woolrich M., Luckhoo H., Price D., Hale J.R., Stephenson M.C., Barnes G.R., Smith S.M., Morris P.G. Investigating the electrophysiological basis of resting state networks using magnetoencephalography. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:16783-16788.
30. Brookes M.J., Hale J.R., Zumer J.M., Stevenson C.M., Francis S.T., Barnes G.R., Owen J.P., Morris P.G., Nagarajan S.S. Measuring functional connectivity using MEG. Methodology and comparison with fcMRI. Neuroimage 2011, 56:1082-1104.
31. Brovelli A., Ding M., Ledberg A., Chen Y., Nakamura R., Bressler S.L. Beta oscillations in a large-scale sensorimotor cortical network: directional influences revealed by Granger causality. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:9849-9854.
32. Buckner R.L., Sepulcre J., Talukdar T., Krienen F.M., Liu H., Hedden T., Andrews-Hanna J.R., Sperling R.A., Johnson K.A. Cortical hubs revealed by intrinsic functional connectivity: mapping, assessment of stability, and relation to Alzheimer's disease. J. Neurosci. 2009, 29:1860-1873.
33. Bullmore E., Sporns O. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 2009, 10:186-198.
34. Buzsaki G. Rhythms of the Brain 2006, Oxford University Press, USA. 1st ed.
35. Buzsaki G., Watson B.O. Brain rhythms and neural syntax: implications for efficient coding of cognitive content and neuropsychiatric disease. Dialogues Clin. Neurosci. 2012, 14:345-367.
36. Calhoun V.D., Adali T. Multi-subject independent component analysis of fMRI: a decade of intrinsic networks, default mode, and neurodiagnostic discovery. IEEE Rev. Biomed. Eng. 2012, 5:60-73.
37. Calhoun V.D., Adali T., Pearlson G.D., Pekar J.J. A method for making group inferences from functional MRI data using independent component analysis. Hum. Brain Mapp. 2001, 14:140-151.
38. Calhoun V.D., Kiehl K.A., Pearlson G.D. Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks. Hum. Brain Mapp. 2008, 29:828-838.
39. Calhoun V.D., Eichele T., Pearlson G.D. Functional brain networks in schizophrenia: a review. Front. Hum. Neurosci. 2009, 3:1-12.
40. Canolty R.T., Ganguly K., Carmena J.M. Task-dependent changes in cross-level coupling between single neurons and oscillatory activity in multiscale networks. PLoS Comput. Biol. 2012, 8:e1002809.
41. 2, and BOLD signals in resting-state fMRI. Neuroimage 2009, 47:1381-1393.
42. Chang C., Glover G.H. Time-frequency dynamics of resting-state brain connectivity measured with fMRI. Neuroimage 2010, 50:81-98.
43. Chang C., Cunningham J.P., Glover G.H. Influence of heart rate on the BOLD signal: the cardiac response function. Neuroimage 2009, 44:857-869.
44. Chang C., Shen X., Glover G.H. Behavioral correlates of temporal variations in brain network connectivity. Proc. HBM, Quebec City, Canada 2011.
45. Chang C., Metzger C.D., Glover G.H., Duyn J.H., Heinze H.J., Walter M. Association between heart rate variability and fluctuations in resting-state functional connectivity. Neuroimage 2013, 68:93-104.
46. Chang C., Liu Z., Chen M.C., Liu X., Duyn J.H. EEG correlates of time-varying BOLD functional connectivity. Neuroimage 2013, 72:227-236.
47. Cole D.M., Smith S.M., Beckmann C.F. Advances and pitfalls in the analysis and interpretation of resting-state fMRI data. Front. Syst. Neurosci. 2010, 4:8.
48. Cribben I., Haraldsdottir R., Atlas L.Y., Wager T.D., Lindquist M.A. Dynamic connectivity regression: determining state-related changes in brain connectivity. Neuroimage 2012, 61:907-920.
49. Critchley H.D., Mathias C.J., Josephs O., O'Doherty J., Zanini S., Dewar B.K., Cipolotti L., Shallice T., Dolan R.J. Human cingulate cortex and autonomic control: converging neuroimaging and clinical evidence. Brain 2003, 126:2139-2152.
50. Dagli M.S., Ingeholm J.E., Haxby J.V. Localization of cardiac-induced signal change in fMRI. Neuroimage 1999, 9:407-415.
51. Dalton K.M., Kalin N.H., Grist T.M., Davidson R.J. Neural-cardiac coupling in threat-evoked anxiety. J. Cogn. Neurosci. 2005, 17:969-980.
52. Damaraju E., Turner J., Preda A., Van Erp T., Mathalon D., Ford J.M., Potkin S., Calhoun V.D. Static and Dynamic Functional Network Connectivity During Resting State in Schizophrenia 2012, American College of Neuropsychopharmacology, Hollywood, CA.
53. Damoiseaux J.S., Greicius M.D. Greater than the sum of its parts: a review of studies combining structural connectivity and resting-state functional connectivity. Brain Struct. Funct. 2009, 213:525-533.
54. Damoiseaux J.S., Rombouts S.A.R.B., Barkhof F., Scheltens P., Stam C.J., Smith S.M., Beckmann C.F. Consistent resting-state networks across healthy subjects. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:13848-13853.
55. de Pasquale F., Della Penna S., Snyder A.Z., Lewis C., Mantini D., Marzetti L., Belardinelli P., Ciancetta L., Pizzella V., Romani G.L., Corbetta M. Temporal dynamics of spontaneous MEG activity in brain networks. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:6040-6045.
56. de Pasquale F., Della Penna S., Snyder A.Z., Marzetti L., Pizzella V., Romani G.L., Corbetta M. A cortical core for dynamic integration of functional networks in the resting human brain. Neuron 2012, 74:753-764.
57. Deco G., Corbetta M. The dynamical balance of the brain at rest. Neuroscientist 2011, 17:107-123.
58. Deco G., Jirsa V., McIntosh A.R., Sporns O., Kötter R. Key role of coupling, delay, and noise in resting brain fluctuations. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:10302-10307.
59. Deco G., Jirsa V.K., McIntosh A.R. Emerging concepts for the dynamical organization of resting-state activity in the brain. Nat. Rev. Neurosci. 2011, 12:43-56.
60. Deco G., Jirsa V., Friston K.J. The dynamical and structural basis of brain activity. Principles of Brain Dynamics: Global State Interactions 2012, The MIT Press, Cambridge MA. 1st ed. M.I. Rabinovich, K.J. Friston, P. Varona (Eds.).
61. DeCoteau W.E., Thorn C., Gibson D.J., Courtemanche R., Mitra P., Kubota Y., Graybiel A.M. Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:5644-5649.
62. Dimitriadis S.I., Laskaris N.A., Tsirka V., Vourkas M., Micheloyannis S. An EEG study of brain connectivity dynamics at the resting state. Nonlinear Dyn. Life Sci. 2012, 16:5-22.
63. Duyn J.H. EEG-fMRI methods for the study of brain networks during sleep. Front. Neurol. 2012, 3:100.
64. Eckman M., Derrfuss J., Fiebach C. Finding spatio-temporal patterns in the dynamics of complex brain networks. Proc. HBM, Beijing, China 2012.
65. Efron B., Tibshirani R. Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Stat. Sci. 1986, 1:54-74.
66. Eichele T., Debener S., Calhoun V.D., Specht K., Engel A.K., Hugdahl K., Von Cramon D.Y., Ullsperger M. Prediction of human errors by maladaptive changes in event-related brain networks. Proc. Natl. Acad. Sci. 2008, 105:6173-6178.
67. Engel A.K., Fries P., Singer W. Dynamic predictions: oscillations and synchrony in top-down processing. Nat. Rev. Neurosci. 2001, 2:704-716.
68. Esposito F., Bertolino A., Scarabino T., Latorre V., Blasi G., Popolizio T., Tedeschi G., Cirillo S., Goebel R., Di Salle F. Independent component model of the default-mode brain function: assessing the impact of active thinking. Brain Res. Bull. 2006, 70:263-269.
69. Fan J., Xu P., Van Dam N.T., Eilam-Stock T., Gu X., Luo Y.J., Hof P.R. Spontaneous brain activity relates to autonomic arousal. J. Neurosci. 2012, 32:11176-11186.
70. Feinberg D.A., Moeller S., Smith S.M., Auerbach E., Ramanna S., Gunther M., Glasser M.F., Miller K.L., Ugurbil K., Yacoub E. Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging. PLoS One 2010, 20(5):e15710.
71. Fiser J., Chiu C., Weliky M. Small modulation of ongoing cortical dynamics by sensory input during natural vision. Nature 2004, 431:573-578.
72. Fornito A., Harrison B.J., Zalesky A., Simons J.S. Competitive and cooperative dynamics of large-scale brain functional networks supporting recollection. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:12788-12793.
73. Fox M.D., Raichle M.E. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat. Rev. Neurosci. 2007, 8:700-711.
74. Fox M.D., Corbetta M., Snyder A.Z., Vincent J.L., Raichle M.E. Spontaneous neuronal activity distinguishes human dorsal and ventral attention systems. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:10046-10051.
75. Fox M.D., Snyder A.Z., Vincent J.L., Raichle M.E. Intrinsic fluctuations within cortical systems account for intertrial variability in human behavior. Neuron 2007, 56:171-184.
76. Fransson P. How default is the default mode of brain function? Further evidence from intrinsic BOLD signal fluctuations. Neuropsychologia 2006, 44:2836-2845.
77. Friston K.J. Functional and effective connectivity: a review. Brain Connect. 2011, 1:13-36.
78. Friston K., Buchel C. Functional connectivity: eigenimages and multivariate analyses. Statistical Parametric Mapping: the Analysis of Functional Brain Images 2007, 492-507. Elsevier, Amsterdam. K.J. Friston, J.T. Ashburner, S.J. Kiebel, T.E. Nichols, W.D. Penny (Eds.).
79. Friston K.J., Buchel C., Fink C.R., Morris J., Rolls E., Dolan R. Psychophysiological and modulatory interactions in neuroimaging. Neuroimage 1997, 6:218-229.
80. Fujisawa S., Buzsaki G. A 4Hz oscillation adaptively synchronizes prefrontal, VTA, and hippocampal activities. Neuron 2011, 72:153-165.
81. Fukunaga M., Horovitz S.G., van Gelderen P., de Zwart J.A., Jansma J.M., Ikonomidou V.N., Chu R., Deckers R.H., Leopold D.A., Duyn J.H. Large-amplitude, spatially correlated fluctuations in BOLD fMRI signals during extended rest and early sleep stages. Magn. Reson. Imaging 2006, 24:979-992.
82. Fukushima M., Saunders R.C., Leopold D.A., Mishkin M., Averbeck B.B. Spontaneous high-gamma band activity reflects functional organization of auditory cortex in the awake macaque. Neuron 2012, 74:899-910.
83. Ghosh A., Rho Y., McIntosh A.R., Kötter R., Jirsa V.K. Noise during rest enables the exploration of the brain's dynamic repertoire. PLoS Comput. Biol. 2008, 4:e1000196.
84. Glover G.H., Li T.Q., Ress D. Image-based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magn. Reson. Med. 2000, 44:162-167.
85. Gonçalves S.I., de Munck J.C., Pouwels P.J., Schoonhoven R., Kuijer J.P., Maurits N.M., Hoogduin J.M., Van Someren E.J., Heethaar R.M., Lopes da Silva F.H. Correlating the alpha rhythm to BOLD using simultaneous EEG/fMRI: inter-subject variability. Neuroimage 2006, 30:203-213.
86. Gonzalez-Castillo J., Wu P., Robinson M., Handwerker D., Inati S., Bandettini P. Detection of task transitions on 45mins long continuous multi-task runs using whole brain connectivity. Biennial Resting-State Conference, Magdeburg, Germany 2012.
87. Gregoriou G.G., Gotts S.J., Zhou H., Desimone R. High-frequency, long-range coupling between prefrontal and visual cortex during attention. Science 2009, 324:1207-1210.
88. Greicius M. Resting-state functional connectivity in neuropsychiatric disorders. Curr. Opin. Neurol. 2008, 21:424-430.
89. Greicius M.D., Srivastava G., Reiss A.L., Menon V. Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:4637-4642.
90. Greicius M.D., Kiviniemi V., Tervonen O., Vainionpaa V., Alahuhta S., Reiss A.L., Menon V. Persistent default-mode network connectivity during light sedation. Hum. Brain Mapp. 2008, 29:839-847.
91. Grothe I., Neitzel S.D., Mandon S., Kreiter A.K. Switching neuronal inputs by differential modulations of gamma-band phase-coherence. J. Neurosci. 2012, 32:16172-16180.
92. Hämäläinen M., Hari R., Ilmoniemi R., Knuutila J., Lounasmaa O. Magnetoencephalography-theory, instrumentation, and applications to noninvasive studies of the working human brain. Rev. Mod. Phys. 1993, 65:1-93.
93. Hamilton J.P., Chen G., Thomason M.E., Schwartz M.E., Gotlib I.H. Investigating neural primacy in major depressive disorder: multivariate Granger causality analysis of resting-state fMRI time-series data. Mol. Psychiatry 2011, 16:763-772.
94. Handwerker D.A., Roopchansingh V., Gonzalez-Castillo J., Bandettini P.A. Periodic changes in fMRI connectivity. Neuroimage 2012, 63:1712-1719.
95. Hauk O., Wakeman D.G., Henson R. Comparison of noisenormalized minimum norm estimates for MEG analysis using multiple resolution metrics. Neuroimage 2011, 54:1966-1974.
96. He B.J., Snyder A.Z., Zempel J.M., Smyth M.D., Raichle M.E. Electrophysiological correlates of the brain's intrinsic large-scale functional architecture. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:16039-16044.
97. Heine L., Soddu A., Gómez F., Vanhaudenhuyse A., Tshibanda L., Thonnard M., Charland-Verville V., Kirsch M., Laureys S., Demertzi A. Resting state networks and consciousness: alterations of multiple resting state network connectivity in physiological, pharmacological, and pathological consciousness states. Front. Psychol. 2012, 3:295.
98. Hennig J., Zhong K., Speck O. MR-encephalography: fast multi-channel monitoring of brain physiology with magnetic resonance. Neuroimage 2007, 34:212-219.
99. Hesselmann G., Kell C.A., Eger E., Kleinschmidt A. Spontaneous local variations in ongoing neural activity bias perceptual decisions. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:10984-10989.
100. Hipp J.F., Hawellek D.J., Corbetta M., Siegel M., Engel A.K. Large-scale cortical correlation structure of spontaneous oscillatory activity. Nat. Neurosci. 2012, 15:884-890.
101. Hlinka J., Alexakis C., Diukova A., Liddle P.F., Auer D.P. Slow EEG pattern predicts reduced intrinsic functional connectivity in the default mode network: an inter-subject analysis. Neuroimage 2010, 53:239-246.
102. Holtzheimer P.E., Mayberg H.S. Stuck in a rut: rethinking depression and its treatment. Trends Neurosci. 2011, 34:1-9.
103. Honey C.J., Kötter R., Breakspear M., Sporns O. Network structure of cerebral cortex shapes functional connectivity on multiple time scales. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:10240-10245.
104. Honey C.J., Sporns O., Cammoun L., Gigandet X., Thiran J.P., Meuli R., Hagmann P. Predicting human resting-state functional connectivity from structural connectivity. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:2035-2040.
105. Horn D.I., Yu C., Steiner J., Buchmann J., Kaufmann J., Osoba A., Eckert U., Zierhut K.C., Schiltz K., He H., Biswal B., Bogerts B., Walter M. Glutamatergic and resting-state functional connectivity correlates of severity in major depression - the role of pregenual anterior cingulate cortex and anterior insula. Front. Syst. Neurosci. 2010, 4:33.
106. Horovitz S.G., Fukunaga M., de Zwart J.A., van Gelderen P., Fulton S.C., Balkin T.J., Duyn J.H. Low frequency BOLD fluctuations during resting wakefulness and light sleep: a simultaneous EEG-fMRI study. Hum. Brain Mapp. 2008, 29:671-682.
107. Horovitz S.G., Braun A.R., Carr W.S., Picchioni D., Balkin T.J., Fukunaga M., Duyn J.H. Decoupling of the brain's default mode network during deep sleep. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:11376-11381.
108. Horwitz B. The elusive concept of brain connectivity. Neuroimage 2003, 19:466-470.
109. Hughes S.W., Lorincz M.L., Blethyn K., Kekesi K.A., Juhasz G., Turmaine M., Parnavelas J.G., Crunelli V. Thalamic gap junctions control local neuronal synchrony and influence macroscopic oscillation amplitude during EEG alpha rhythms. Front. Psychol. 2011, 2:193.
110. Hutchison R.M., Everling S. Monkey in the middle: why non-human primates are needed to bridge the gap in resting-state investigations. Front. Neuroanat. 2012, 6:29.
111. Hutchison R.M., Womelsdorf T., Gati J.S., Everling S., Menon R.S. Resting-state networks show dynamic functional connectivity in awake humans and anesthetized macaques. Hum. Brain Mapp. 2013, (in press).
112. Jensen O., Colgin L.L. Cross-frequency coupling between neuronal oscillations. Trends Cogn. Sci. 2007, 11:267-269.
113. Jones D.T., Vemuri P., Murphy M.C., Gunter J.L., Senjem M.L., Machulda M.M., Przybelski S.A., Gregg B.E., Kantarci K., Knopman D.S., Boeve B.F., Petersen R.C., Jack C.R. Non-stationarity in the "resting brain's" modular architecture. PLoS One 2012, 7:e39731.
114. Jönsson P., Sonnby-Borgström M. The effects of pictures of emotional faces on tonic and phasic autonomic cardiac control in women and men. Biol. Psychol. 2003, 62:157-173.
115. Kaneko K., Tsuda I. Chaotic itinerancy. Chaos 2003, 13:926.
116. Keilholz S.D., Magnuson M.E., Pan W.J., Willis M., Thompson G.J. Dynamic properties of functional connectivity in the rodent. Brain Connect. 2013, 3:31-40.
117. Keller C.J., Bickel S., Honey C.J., Groppe D.M., Entz L., Craddock R.C., Lado F.A., Kelly C., Milham M., Mehta A.D. Neurophysiological investigation of spontaneous correlated and anticorrelated fluctuations of the BOLD signal. J. Neurosci. 2013, 33:6333-6342.
118. Kelly A.M., Uddin L.Q., Biswal B.B., Castellanos F.X., Milham M.P. Competition between functional brain networks mediates behavioral variability. Neuroimage 2008, 39:527-537.
119. Kenet T., Bibitchkov D., Tsodyks M., Grinvald A., Arieli A. Spontaneously emerging cortical representations of visual attributes. Nature 2003, 425:954-956.
120. Kinnison J., Padmala S., Choi J.M., Pessoa L. Network analysis reveals increased integration during emotional and motivational processing. J. Neurosci. 2012, 32:8361-8372.
121. Kiviniemi V.J., Haanpää H., Kantola J.H., Jauhiainen J., Vainionpää V., Alahuhta S., Tervonen O. Midazolam sedation increases fluctuation and synchrony of the resting brain BOLD signal. Magn. Reson. Imaging 2005, 23:531-537.
122. Kiviniemi V., Vire T., Remes J., Elseoud A.A., Starck T., Tervonen O., Nikkinen J. A sliding time-window ICA reveals spatial variability of the default mode network in time. Brain Connect. 2011, 1:339-347.
123. Knyazev G.G., Slobodskoj-Plusnin J.Y., Bocharov A.V., Pylkova L.V. The default mode network and EEG α oscillations: an independent component analysis. Brain Res. 2011, 1402:67-79.
124. Krook-Magnuson E., Varga C., Lee S.H., Soltesz I. New dimensions of interneuronal specialization unmasked by principal cell heterogeneity. Trends Neurosci. 2012, 35:175-184.
125. Kundu P., Inati S.J., Evans J.W., Luh W.M., Bandettini P.A. Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI. Neuroimage 2012, 60:1759-1770.
126. Laird A.R., Fox P.M., Eickhoff S.B., Turner J.A., Ray K.L., McKay D.R., Glahn D.C., Beckmann C.F., Smith S.M., Fox P.T. Behavioral interpretations of intrinsic connectivity networks. J. Cogn. Neurosci. 2011, 23:4022-4037.
127. Långsjö J.W., Alkire M.T., Kaskinoro K., Hayama H., Maksimow A., Kaisti K.K., Aalto S., Aantaa R., Jääskeläinen S.K., Revonsuo A., Scheinin H. Returning from oblivion: imaging the neural core of consciousness. J. Neurosci. 2012, 32:4935-4943.
128. Lansink C.S., Goltstein P.M., Lankelma J.V., McNaughton B.L., Pennartz C.M. Hippocampus leads ventral striatum in replay of place-reward information. PLoS Biol. 2009, 7:e1000173.
129. Larkman D.J., Hajnal J.V., Herlihy A.H., Coutts G.A., Young I.R., Ehnholm G. Use of multicoil arrays for separation of signal from multiple slices simultaneously excited. J. Magn. Reson. Imaging 2001, 13:313-317.
130. Laufs H. Endogenous brain oscillations and related networks detected by surface EEG-combined fMRI. Hum. Brain Mapp. 2008, 29:762-769.
131. Laufs H. Multimodal analysis of resting state cortical activity: what does EEG add to our knowledge of resting state BOLD networks?. Neuroimage 2010, 52:1171-1172.
132. Laufs H., Kleinschmidt A., Beyerle A., Eger E., Salek-Haddadi A., Preibisch C., Krakow K. EEG-correlated fMRI of human alpha activity. Neuroimage 2003, 19:1463-1476.
133. Lee H.L., Zahneisen B., Hugger T., Levan P., Hennig J. Tracking dynamic resting-state networks at higher frequencies using MR-encephalography. Neuroimage 2013, 65:216-222.
134. Leonardi N., Richiardi J., Van De Ville D. Functional connectivity eigennetworks reveal different brain dynamics in multiple sclerosis patients. IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro San Francisco, CA, USA 2013.
135. Leopold D.A., Maier A. Ongoing physiological processes in the cerebral cortex. Neuroimage 2012, 62:2190-2200.
136. Leopold D.A., Murayama Y., Logothetis N.K. Very slow activity fluctuations in monkey visual cortex: implications for functional brain imaging. Cereb. Cortex 2003, 13:422-433.
137. Lesting J., Narayanan R.T., Kluge C., Sangha S., Seidenbecher T., Pape H.C. Patterns of coupled theta activity in amygdala-hippocampal-prefrontal cortical circuits during fear extinction. PLoS One 2011, 6:e21714.
138. Lewis C.M., Baldassarre A., Committeri G., Romani G.L., Corbetta M. Learning sculpts the spontaneous activity of the resting human brain. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:17558-17563.
139. Liang Z., King J., Zhang N. Uncovering intrinsic connectional architecture of functional networks in awake rat brain. J. Neurosci. 2011, 31:3776-3783.
140. Liebe S., Hoerzer G.M., Logothetis N.K., Rainer G. Theta coupling between V4 and prefrontal cortex predicts visual short-term memory performance. Nat. Neurosci. 2012, 15:456-462.
141. Lin F.H., Wald L.L., Ahlfors S.P., Hämäläinen M.S., Kwong K.K., Belliveau J.W. Dynamic magnetic resonance inverse imaging of human brain function. Magn. Reson. Med. 2006, 56:787-802.
142. Lisman J.E., Jensen O. The theta-gamma neural code. Neuron 2013, 77:1002-1016.
143. Liu X., Duyn J.H. Time-varying functional network information extracted from brief instances of spontaneous brain activity. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:4392-4397.
144. Liu H., Stufflebeam S.M., Sepulcre J., Hedden T., Buckner R.L. Evidence that functional asymmetry of the human brain is controlled by multiple factors. Proc. Natl. Acad. Sci. 2009, 111:746-754.
145. Liu Z., Fukunaga M., de Zwart J.A., Duyn J.H. Large-scale spontaneous fluctuations and correlations in brain electrical activity observed with magnetoencephalography. Neuroimage 2010, 51:102-111.
146. Liu X., Zhu X.-H., Zhang Y., Chen W. Neural origin of spontaneous hemodynamic fluctuations in rats under burst-suppression anesthesia condition. Cereb. Cortex 2011, 21:374-384.
147. Llinás R.R. The intrinsic electrophysiological properties of mammalian neurons: insights into central nervous system function. Science 1988, 242:1654-1664.
148. Logothetis N.K., Pauls J., Augath M., Trinath T., Oeltermann A. Neurophysiological investigation of the basis of the fMRI signal. Nature 2001, 412:150-157.
149. Lu H., Zuo Y., Gu H., Waltz J.A., Zhan W., Scholl C.A., Rea W., Yang Y., Stein E.A. Synchronized delta oscillations correlate with the resting-state functional MRI signal. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:18265-18269.
150. Magnuson M., Majeed W., Keilholz S.D. Functional connectivity in BOLD and CBV weighted resting state fMRI in the rat brain. J. Magn. Reson. Imaging 2010, 32:584-592.
151. Magri C., Schridde U., Murayama Y., Panzeri S., Logothetis N.K. The amplitude and timing of the BOLD signal reflects the relationship between local field potential power at different frequencies. J. Neurosci. 2012, 32:1395-1407.
152. Majeed W., Magnuson M., Keilholz S.D. Spatiotemporal dynamics of low frequency fluctuations in BOLD fMRI of the rat. J. Magn. Reson. Imaging 2009, 30:384-393.
153. Majeed W., Magnuson M., Hasenkamp W., Schwarb H., Schumacher E.H., Barsalou L., Keilholz S.D. Spatiotemporal dynamics of low frequency BOLD fluctuations in rats and humans. Neuroimage 2011, 54:1140-1150.
154. Mantini D., Perrucci M.G., Del Gratta C., Romani G.L., Corbetta M. Electrophysiological signatures of resting state networks in the human brain. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:13170-13175.
155. Mantini D., Gerits A., Nelissen K., Durand J.B., Joly O., Simone L., Sawamura H., Wardak C., Orban G.A., Buckner R.L., Vanduffel W. Default mode of brain function in monkeys. J. Neurosci. 2011, 31:12954-12962.
156. Margulies D.S., Böttger J., Watanabe A., Gorgolewski K.J. Visualizing the human connectome. Neuroimage 2013, 80:445-461.
157. Martuzzi R., Ramani R., Qiu M., Rajeevan N., Constable R.T. Functional connectivity and alterations in baseline brain state in humans. Neuroimage 2010, 49:823-834.
158. Marx M., Pauly K.B., Chang C. A novel approach for global noise reduction in resting-state fMRI: APPLECOR. Neuroimage 2013, 64:19-31.
159. McAvoy M., Larson-Prior L., Ludwikow M., Zhang D., Snyder A.Z., Gusnard D.L., Raichle M.E., d'Avossa G. Dissociated mean and functional connectivity BOLD signals in visual cortex during eyes closed and fixation. J. Neurophysiol. 2012, 108:2363-2372.
160. McKeown M.J., Makeig S., Brown G.G., Jung T.P., Kindermann S.S., Bell A.J., Sejnowski T.J. Analysis of fMRI data by blind separation into independent spatial components. Hum. Brain Mapp. 1998, 6:160-188.
161. Meindl T., Teipel S., Elmouden R., Mueller S., Koch W., Dietrich O., Coates U., Reiser M., Glaser C. Test-retest reproducibility of the default-mode network in healthy individuals. Hum. Brain Mapp. 2010, 31:237-246.
162. Menon V. Large-scale brain networks and psychopathology: a unifying triple network model. Trends Cogn. Sci. 2011, 15:483-506.
163. Merritt M., Thompson G., Pan W.J., Magnuson M.E., Keilholz S. The electrical basis of dynamic functional connectivity measured with sliding window correlation. Proc ISMRM 2013, #2243.
164. Meunier D., Lambiotte R., Fornito A., Ersche K.D., Bullmore E.T. Hierarchical modularity in human brain functional networks. Front. Neuroinform. 2009, 3:37.
165. Meunier D., Lambiotte R., Bullmore E.T. Modular and hierarchically modular organization of brain networks. Front. Neurosci. 2010, 4:200.
166. Miller R., Calhoun V.D. Frequency space analysis reveals marked differences in whole brain resting state spatiotemporal activation patterns between schizophrenia patients and healthy controls. Proc. HBM, Seattle, WA 2013.
167. Moeller S., Yacoub E., Olman C.A., Auerbach E., Strupp J., Harel N., Uǧurbil K. Multiband multislice GE-EPI at 7Tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI. Magn. Reson. Med. 2010, 63:1144-1153.
168. Musso F., Brinkmeyer J., Mobascher A., Warbrick T., Winterer G. Spontaneous brain activity and EEG microstates. A novel EEG/fMRI analysis approach to explore resting-state networks. Neuroimage 2010, 52:1149-1161.
169. Niazy R.K., Xie J., Miller K., Beckmann C.F., Smith S.M. Spectral characteristics of resting state networks. Prog. Brain Res. 2011, 193:259-276.
170. Nir Y., Fisch L., Mukamel R., Gelbard-Sagiv H., Arieli A., Fried I., Malach R. Coupling between neuronal firing rate, gamma LFP, and BOLD fMRI is related to interneuronal correlations. Curr. Biol. 2007, 17:1275-1285.
171. Nir Y., Mukamel R., Dinstein I., Privman E., Harel M., Fisch L., Gelbard-Sagiv H., Kipervasser S., Andelman F., Neufeld M.Y., Kramer U., Arieli A., Fried I., Malach R. Interhemispheric correlations of slow spontaneous neuronal fluctuations revealed in human sensory cortex. Nat. Neurosci. 2008, 11:1100-1108.
172. Palva S., Monto S., Palva J.M. Graph properties of synchronized cortical networks during visual working memory maintenance. Neuroimage 2010, 49:3257-3268.
173. Pan W., Thompson G., Magnuson M., Majeed W., Jaeger D., Keilholz S. Simultaneous fMRI and electrophysiology in the rodent brain. J. Vis. Exp. 2010, 42:1901.
174. Pan W., Thompson G., Magnuson M., Majeed W., Jaeger D., Keilholz S. Broad-band LFPs correlate with spontaneous fluctuations in fMRI signals in the rat somatosensory cortex under isoflurane anesthesia. Brain Connect. 2011, 1:119-131.
175. Pan W.J., Thompson G.J., Magnuson M.E., Jaeger D., Keilholz S. Infraslow LFP correlates to resting-state fMRI BOLD signals. Neuroimage 2013, 26:288-297.
176. Peltier S.J., Kerssens C., Hamann S.B., Sebel P.S., Byas-Smith M., Hu X. Functional connectivity changes with concentration of sevoflurane anesthesia. NeuroReport 2005, 16:285-288.
177. 2) fluctuations in the resting-state BOLD signal differ between eyes open and eyes closed. Magn. Reson. Imaging 2013, 31:336-345.
178. Pesaran B., Nelson M.J., Andersen R.A. Free choice activates a decision circuit between frontal and parietal cortex. Nature 2008, 453:406-409.
179. Phillips J.M., Vinck M., Everling S., Womelsdorf T. A long-range fronto-parietal 5- to 10-Hz network predicts "top-down" controlled guidance in a task-switch paradigm. Cereb. Cortex 2013, (in press).
180. Pizzella V., Della Penna S., Del Gratta C., Romani G.L. SQUID systems for biomagnetic imaging. Supercond. Sci. Technol. 2001, 14:R79-R114.
181. Popa D., Duvarci S., Popescu A.T., Lena C., Pare D. Coherent amygdalocortical theta promotes fear memory consolidation during paradoxical sleep. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:6516-6519.
182. Power J.D., Cohen A.L., Nelson S.M., Wig G.S., Barnes K.A., Church J.A., Vogel A.C., Laumann T.O., Miezin F.M., Schlaggar B.L., Petersen S.E. Functional network organization of the human brain. Neuron 2011, 72:665-678.
183. Power J.D., Barnes K.A., Snyder A.Z., Schlaggar B.L., Petersen S.E. Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. Neuroimage 2012, 59:2142-2154.
184. Rabinovich M.I., Varona P. Robust transient dynamics and brain functions. Front. Comput. Neurosci. 2011, 5:24.
185. Principles of Brain Dynamics: Global State Interactions 2012, The MIT Press. 1st ed. M.I. Rabinovich, K.J. Friston, P. Varona (Eds.).
186. Rack-Gomer A.L., Liu T.T. Caffeine increases the temporal variability of resting-state BOLD connectivity in the motor cortex. Neuroimage 2012, 59:2994-3002.
187. Raichle M.E. Two views of brain function. Trends Cogn. Sci. 2010, 14:180-190.
188. Rashid B., Damaraju E., Calhoun V.D. Comparison of resting state dynamics in healthy, schizophrenia and bipolar disease. Proc. HBM, Seattle, WA 2013.
189. Raz G., Winetraub Y., Jacob Y., Kinreich S., Maron-Katz A., Shaham G., Podlipsky I., Gilam G., Soreq E., Hendler T. Portraying emotions at their unfolding: a multilayered approach for probing dynamics of neural networks. Neuroimage 2012, 60:1448-1461.
190. Ringach D.L. Spontaneous and driven cortical activity: implications for computation. Curr. Opin. Neurobiol. 2009, 19:439-444.
191. Robinson L.F., de la Peña V.H., Kushnir Y. Detecting shifts in correlation and variability with application to ENSO-monsoon rainfall relationships. Theor. Appl. Climatol. 2008, 94:215-224.
192. Rubinov M., Sporns O. Weight-conserving characterization of complex functional brain networks. Neuroimage 2011, 56:2068-2079.
193. Sadaghiani S., Hesselmann G., Friston K.J., Kleinschmidt A. The relation of ongoing brain activity, evoked neural responses, and cognition. Front. Syst. Neurosci. 2010, 4:20.
194. Sakoglu U., Pearlson G.D., Kiehl K.A., Wang Y., Michael A., Calhoun V.D. A method for evaluating dynamic functional network connectivity and task-modulation: application to schizophrenia. MAGMA 2010, 23(5-6):351-366. (PMC pending #180300).
195. Salazar R.F., Dotson N.M., Bressler S.L., Gray C.M. Content-specific fronto-parietal synchronization during visual working memory. Science 2012, 338:1097-1100.
196. Salvador R., Suckling J., Coleman M.R., Pickard J.D., Menon D., Bullmore E. Neurophysiological architecture of functional magnetic resonance images of human brain. Cereb. Cortex 2005, 15(9):1332-1342. (Sep).
197. Satterthwaite T.D., Wolf D.H., Loughead J., Ruparel K., Elliott M.A., Hakonarson H., Gur R.C., Gur R.E. Impact of in-scanner head motion on multiple measures of functional connectivity: relevance for studies of neurodevelopment in youth. Neuroimage 2012, 60:623-632.
198. Scheeringa R., Petersson K.M., Kleinschmidt A., Jensen O., Bastiaansen M.C. EEG alpha power modulation of FMRI resting-state connectivity. Brain Connect. 2012, 2:254-264.
199. Schölvinck M.L., Maier A., Ye F.Q., Duyn J.H., Leopold D.A. Neural basis of global resting-state fMRI activity. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:10238-10243.
200. Schölvinck M.L., Leopold D.A., Brookes M.J., Khader P.H. The contribution of electrophysiology to functional connectivity mapping. Neuroimage 2013, 80:297-306.
201. Schrouff J., Perlbarg V., Boly M., Marrelec G., Boveroux P., Vanhaudenhuyse A., Bruno M.A., Laureys S., Phillips C., Pélégrini-Issac M., Maquet P., Benali H. Brain functional integration decreases during propofol-induced loss of consciousness. Neuroimage 2011, 57:198-205.
202. Seeley W.W., Menon V., Schatzberg A.F., Keller J., Glover G.H., Kenna H., Reiss A.L., Greicius M.D. Dissociable intrinsic connectivity networks for salience processing and executive control. J. Neurosci. 2007, 27:2349-2356.
203. Shehzad Z., Kelly A.M., Reiss P.T., Gee D.G., Gotimer K., Uddin L.Q., Lee S.H., Margulies D.S., Roy A.K., Biswal B.B., Petkova E., Castellanos F.X., Milham M.P. The resting brain: unconstrained yet reliable. Cereb. Cortex 2009, 19:2209-2229.
204. Shen K., Hutchison R.M., Bezgin G., Gati J.S., Menon R.S., Everling S., McIntosh A.R. Resting-state functional connectivity dynamics are influenced by network structure. Toronto, ON: Canadian Association for Neuroscience Annual Meeting 2013.
205. Shirer W.R., Ryali S., Rykhlevskaia E., Menon V., Greicius M.D. Decoding subject-driven cognitive states with whole-brain connectivity patterns. Cereb. Cortex 2012, 22:158-165.
206. Shmuel A., Leopold D.A. Neuronal correlates of spontaneous fluctuations in fMRI signals in monkey visual cortex: implications for functional connectivity at rest. Hum. Brain Mapp. 2008, 29:751-761.
207. Shmueli K., van Gelderen P., de Zwart J.A., Horovitz S.G., Fukunaga M., Jansma J.M., Duyn J.H. Low-frequency fluctuations in the cardiac rate as a source of variance in the resting-state fMRI BOLD signal. Neuroimage 2007, 38:306-320.
208. Siegel M., Donner T.H., Engel A.K. Spectral fingerprints of large-scale neuronal interactions. Nat. Rev. Neurosci. 2012, 13:121-134.
209. Sirota A., Montgomery S., Fujisawa S., Isomura Y., Zugaro M., Buzsaki G. Entrainment of neocortical neurons and gamma oscillations by the hippocampal theta rhythm. Neuron 2008, 60:683-697.
210. Smith S.M., Fox P.T., Miller K.L., Glahn D.C., Fox P.M., Mackay C.E., Filippini N., Watkins K.E., Toro R., Laird A.R., Beckmann C.F. Correspondence of the brain's functional architecture during activation and rest. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:13040-13045.
211. Smith S.M., Miller K.L., Salimi-Khorshidi G., Webster M., Beckmann C.F., Nichols T.E., Ramsey J.D., Woolrich M.W. Network modelling methods for fMRI. Neuroimage 2011, 54:875-891.
212. Smith S.M., Miller K.L., Moeller S., Xu J., Auerbach E.J., Woolrich M.W., Beckmann C.F., Jenkinson M., Andersson J., Glasser M.F., Van Essen D.C., Feinberg D.A., Yacoub E.S., Ugurbil K. Temporally-independent functional modes of spontaneous brain activity. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:3131-3136.
213. Song M., Zhou Y., Li J., Liu Y., Tian L., Yu C., Jiang T. Brain spontaneous functional connectivity and intelligence. Neuroimage 2008, 41:1168-1176.
214. Sorg C., Riedl V., Mühlau M., Calhoun V.D., Eichele T., Läer L., Drzezga A., Förstl H., Kurz A., Zimmer C., Wohlschläger A.M. Selective changes of resting-state networks in individuals at risk for Alzheimer's disease. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:18760-18765.
215. Sporns O. The non-random brain: efficiency, economy, and complex dynamics. Front. Comput. Neurosci. 2011, 5:5.
216. Sun F.T., Miller L.M., Rao A.A., D'Esposito M. Functional connectivity of cortical networks involved in bimanual motor sequence learning. Cereb. Cortex 2007, 17:1227-1234.
217. Supekar K., Menon V., Rubin D., Musen M., Greicius M.D. Network analysis of intrinsic functional brain connectivity in Alzheimer's disease. PLoS Comput. Biol. 2008, 4:e1000100.
218. Tagliazucchi E., von Wegner F., Morzelewski A., Borisov S., Jahnke K., Laufs H. Automatic sleep staging using fMRI functional connectivity data. Neuroimage 2012, 63:63-72.
219. Tagliazucchi E., von Wegner F., Morzelewski A., Brodbeck V., Laufs H. Dynamic BOLD functional connectivity in humans and its electrophysiological correlates. Front. Hum. Neurosci. 2012, 6:339.
220. Tagliazucchi E., Balenzuela P., Fraiman D., Chialvo D.R. Criticality in large-scale brain fMRI dynamics unveiled by a novel point process analysis. Front. Physiol. 2012, 3:15.
221. Tambini A., Ketz N., Davachi L. Enhanced brain correlations during rest are related to memory for recent experiences. Neuron 2010, 65:280-290.
222. Tang Y.Y., Rothbart M.K., Posner M.I. Neural correlates of establishing, maintaining, and switching brain states. Trends Cogn. Sci. 2012, 16:330-337.
223. Task Force Heart rate variability: standards of measurement, physiological interpretation and clinical use. Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology. Circulation 1996, 93:1043-1065.
224. Thompson G., Magnuson M., Merritt M., Schwarb H., Pan W., McKinley A., Tripp L., Schumacher E., Keilholz S. Short time windows of correlation between large scale functional brain networks predict vigilance intra-individually and inter-individually. Hum. Brain Mapp. 2013, (in press).
225. Timofeev I., Bazhenov M., Seigneur J., Sejnowski T. Neuronal synchronization and thalamocortical rhythms in sleep, wake and epilepsy. Jasper's Basic Mechanisms of the Epilepsies, Bethesda, MD 2012, J.L. Noebels, M. Avoli, M.A. Rogawski, R.W. Olsen, A.V. Delgado-Escueta (Eds.).
226. Torrence C., Compo G. A practical guide to wavelet analysis. Bull. Am. Meteorol. Soc. 1998, 79:61-78.
227. Tsodyks M., Kenet T., Grinvald A., Arieli A. Linking spontaneous activity of single cortical neurons and the underlying functional architecture. Science 1999, 286:1943-1946.
228. van den Heuvel M.P., Stam C.J., Kahn R.S., Hulshoff Pol H.E. Efficiency of functional brain networks and intellectual performance. J. Neurosci. 2009, 29:7619-7624.
229. Van Dijk K.R., Hedden T., Venkataraman A., Evans K.C., Lazar S.W., Buckner R.L. Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. J. Neurophysiol. 2010, 103:297-321.
230. Van Dijk K.R.A., Sabuncu M.R., Buckner R.L. The influence of head motion on intrinsic functional connectivity MRI. Neuroimage 2012, 59:431-438.
231. Van Oort E., Norris D., Smith S.M., Beckmann C. Resting State Networks are Characterized by High Frequency BOLD Fluctuations 2012, OHBM, Beijing.
232. Vanhatalo S., Palva J.M., Holmes M.D., Miller J.W., Voipio J., Kaila K. Infraslow oscillations modulate excitability and interictal epileptic activity in the human cortex during sleep. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:5053-5057.
233. Varela F., Lachaux J.P., Rodriguez E., Martinerie J. The brainweb: phase synchronization and large-scale integration. Nat. Rev. Neurosci. 2001, 2:229-239.
234. Varoquaux G., Craddock R.C. Learning and comparing functional connectomes across subjects. Neuroimage 2013, 80:405-415.
235. Vincent J.L., Patel G.H., Fox M.D., Snyder A.Z., Baker J.T., Van Essen D.C., Zempel J.M., Snyder L.H., Corbetta M., Raichle M.E. Intrinsic functional architecture in the anaesthetized monkey brain. Nature 2007, 447:83-86.
236. Vogels T.P., Rajan K., Abbott L.F. Neural network dynamics. Annu. Rev. Neurosci. 2005, 28:357-376.
237. Dynamic Coordination in the Brain: From Neurons to Mind 2010, The MIT Press. C. von der Malsburg, W.A. Phillips, W. Singer (Eds.).
238. von Stein A., Chiang C., König P. Top-down processing mediated by interareal synchronization. Proc. Natl. Acad. Sci. U. S. A. 2000, 97:14748-14753.
239. Wallentin M., Nielsen A.H., Vuust P., Dohn A., Roepstorff A., Lund T.E. Amygdala and heart rate variability responses from listening to emotionally intense parts of a story. Neuroimage 2011, 58:963-973.
240. Wei L., Duan X., Yang Y., Liao W., Gao Q., Ding J.R., Zhang Z., Zeng W., Li Y., Lu G., Chen H. The synchronization of spontaneous BOLD activity predicts extraversion and neuroticism. Brain Res. 2011, 1419:68-75.
241. Wise R.G., Ide K., Poulin M.J., Tracey I. Resting fluctuations in arterial carbon dioxide induce significant low frequency variations in BOLD signal. Neuroimage 2004, 21:1652-1664.
242. Womelsdorf T., Schoffelen J.M., Oostenveld R., Singer W., Desimone R., Engel A.K., Fries P. Modulation of neuronal interactions through neuronal synchronization. Science 2007, 316:1609-1612.
243. Wu L., Eichele T., Calhoun V.D. Reactivity of hemodynamic responses and functional connectivity to different states of alpha synchrony: a concurrent EEG-fMRI study. Neuroimage 2010, 52:1252-1260.
244. Yan C.G., Cheung B., Kelly C., Colcombe S., Craddock R.C., Di Martino A., Li Q., Zuo X.N., Castellanos F.X., Milham M.P. A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. Neuroimage 2013, 76:183-201.
245. Yeo B.T., Krienen F.M., Sepulcre J., Sabuncu M.R., Lashkari D., Hollinshead M., Roffman J.L., Smoller J.W., Zöllei L., Polimeni J.R., Fischl B., Liu H., Buckner R.L. The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J. Neurophysiol. 2011, 106:1125-1165.