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Volumn 57, Issue 8, 2013, Pages 3864-3874

Analysis of the small RNA transcriptional response in multidrug-resistant staphylococcus aureus after antimicrobial exposure

Author keywords

[No Author keywords available]

Indexed keywords

CEFTOBIPROLE; LINEZOLID; MESSENGER RNA; SMALL UNTRANSLATED RNA; TIGECYCLINE; VANCOMYCIN;

EID: 84880279404     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.00263-13     Document Type: Article
Times cited : (76)

References (53)
  • 2
    • 74249096623 scopus 로고    scopus 로고
    • Reduced vancomycin susceptibility in Staphylococcus aureus, including vancomycin-intermediate and heterogeneous vancomycin-intermediate strains: Resistance mechanisms, laboratory detection, and clinical implications
    • Howden BP, Davies JK, Johnson PD, Stinear TP, Grayson ML. 2010. Reduced vancomycin susceptibility in Staphylococcus aureus, including vancomycin-intermediate and heterogeneous vancomycin-intermediate strains: resistance mechanisms, laboratory detection, and clinical implications. Clin. Microbiol. Rev. 23:99-139.
    • (2010) Clin. Microbiol. Rev. , vol.23 , pp. 99-139
    • Howden, B.P.1    Davies, J.K.2    Johnson, P.D.3    Stinear, T.P.4    Grayson, M.L.5
  • 4
    • 40949144977 scopus 로고    scopus 로고
    • Prevalence of MRSA among Staphylococcus aureus isolated from hospital inpatients, 2005: Report from the Australian Group for Antimicrobial Resistance
    • Nimmo GR, Pearson JC, Collignon PJ, Christiansen KJ, Coombs GW, Bell JM, McLaws ML. 2007. Prevalence of MRSA among Staphylococcus aureus isolated from hospital inpatients, 2005: report from the Australian Group for Antimicrobial Resistance. Commun. Dis. Intell. 31:288-296.
    • (2007) Commun. Dis. Intell. , vol.31 , pp. 288-296
    • Nimmo, G.R.1    Pearson, J.C.2    Collignon, P.J.3    Christiansen, K.J.4    Coombs, G.W.5    Bell, J.M.6    McLaws, M.L.7
  • 7
    • 0037133946 scopus 로고    scopus 로고
    • Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
    • Wassarman KM. 2002. Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 109:141-144.
    • (2002) Cell , vol.109 , pp. 141-144
    • Wassarman, K.M.1
  • 8
    • 77954665866 scopus 로고    scopus 로고
    • A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule
    • doi:10.1371/journal.ppat.1000927
    • Chabelskaya S, Gaillot O, Felden B. 2010. A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule. PLoS Pathog. 6:e1000927. doi:10.1371/journal.ppat. 1000927.
    • (2010) PLoS Pathog. , vol.6
    • Chabelskaya, S.1    Gaillot, O.2    Felden, B.3
  • 9
    • 84855464046 scopus 로고    scopus 로고
    • A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide
    • Sayed N, Jousselin A, Felden B. 2012. A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nat. Struct. Mol. Biol. 19:105-112.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 105-112
    • Sayed, N.1    Jousselin, A.2    Felden, B.3
  • 10
    • 84863924309 scopus 로고    scopus 로고
    • Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
    • doi:10.1101/cshperspect.a003798
    • Gottesman S, Storz G. 2011. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb. Perspect. Biol. 3:a003798. doi:10.1101/cshperspect.a003798.
    • (2011) Cold Spring Harb. Perspect. Biol. , vol.3
    • Gottesman, S.1    Storz, G.2
  • 12
    • 66449091512 scopus 로고    scopus 로고
    • Singlepass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles
    • Marchais A, Naville M, Bohn C, Bouloc P, Gautheret D. 2009. Singlepass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles. Genome Res. 19:1084-1092.
    • (2009) Genome Res. , vol.19 , pp. 1084-1092
    • Marchais, A.1    Naville, M.2    Bohn, C.3    Bouloc, P.4    Gautheret, D.5
  • 13
    • 34247173351 scopus 로고    scopus 로고
    • Identification of small RNAs in diverse bacterial species
    • Livny J, Waldor MK. 2007. Identification of small RNAs in diverse bacterial species. Curr. Opin. Microbiol. 10:96-101.
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 96-101
    • Livny, J.1    Waldor, M.K.2
  • 14
    • 26444600764 scopus 로고    scopus 로고
    • Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains
    • Pichon C, Felden B. 2005. Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc. Natl. Acad. Sci. U. S. A. 102:14249-14254.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 14249-14254
    • Pichon, C.1    Felden, B.2
  • 15
    • 70349736084 scopus 로고    scopus 로고
    • Experimental approaches for the discovery and characterization of regulatory small RNA
    • Sharma CM, Vogel J. 2009. Experimental approaches for the discovery and characterization of regulatory small RNA. Curr. Opin. Microbiol. 12:536-546.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 536-546
    • Sharma, C.M.1    Vogel, J.2
  • 16
    • 77956278172 scopus 로고    scopus 로고
    • Cartography of methicillinresistant S. aureus transcripts: Detection, orientation and temporal expression during growth phase and stress conditions
    • doi: 10.1371/journal.pone.0010725
    • Beaume M, Hernandez D, Farinelli L, Deluen C, Linder P, Gaspin C, Romby P, Schrenzel J, Francois P. 2010. Cartography of methicillinresistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions. PLoS One 5:e10725. doi: 10.1371/journal.pone.0010725.
    • (2010) PLoS One , vol.5
    • Beaume, M.1    Hernandez, D.2    Farinelli, L.3    Deluen, C.4    Linder, P.5    Gaspin, C.6    Romby, P.7    Schrenzel, J.8    Francois, P.9
  • 17
    • 0027180031 scopus 로고
    • Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule
    • Novick RP, Ross HF, Projan SJ, Kornblum J, Kreiswirth B, Moghazeh S. 1993. Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. EMBO J. 12:3967-3975.
    • (1993) EMBO J. , vol.12 , pp. 3967-3975
    • Novick, R.P.1    Ross, H.F.2    Projan, S.J.3    Kornblum, J.4    Kreiswirth, B.5    Moghazeh, S.6
  • 19
    • 84865821690 scopus 로고    scopus 로고
    • Tigecycline challenge triggers sRNA production in Salmonella enterica serovar Typhimurium
    • doi:10.1186/1471-2180-12-195
    • Yu J, Schneiders T. 2012. Tigecycline challenge triggers sRNA production in Salmonella enterica serovar Typhimurium. BMC Microbiol. 12:195. doi:10.1186/1471-2180-12-195.
    • (2012) BMC Microbiol. , vol.12 , pp. 195
    • Yu, J.1    Schneiders, T.2
  • 20
    • 33748690592 scopus 로고    scopus 로고
    • Isolates with low-level vancomycin resistance associated with persistent methicillin-resistant Staphylococcus aureus bacteremia
    • Howden BP, Johnson PD, Ward PB, Stinear TP, Davies JK. 2006. Isolates with low-level vancomycin resistance associated with persistent methicillin-resistant Staphylococcus aureus bacteremia. Antimicrob. Agents Chemother. 50:3039-3047.
    • (2006) Antimicrob. Agents Chemother. , vol.50 , pp. 3039-3047
    • Howden, B.P.1    Johnson, P.D.2    Ward, P.B.3    Stinear, T.P.4    Davies, J.K.5
  • 21
    • 54049146958 scopus 로고    scopus 로고
    • Genomic analysis reveals a point mutation in the two-component sensor gene graS that leads to intermediate vancomycin resistance in clinical Staphylococcus aureus
    • Howden BP, Stinear TP, Allen DL, Johnson PD, Ward PB, Davies JK. 2008. Genomic analysis reveals a point mutation in the two-component sensor gene graS that leads to intermediate vancomycin resistance in clinical Staphylococcus aureus. Antimicrob. Agents Chemother. 52:3755-3762.
    • (2008) Antimicrob. Agents Chemother. , vol.52 , pp. 3755-3762
    • Howden, B.P.1    Stinear, T.P.2    Allen, D.L.3    Johnson, P.D.4    Ward, P.B.5    Davies, J.K.6
  • 22
    • 0033592606 scopus 로고    scopus 로고
    • Learning the parts of objects by non-negative matrix factorization
    • Lee DD, Seung HS. 1999. Learning the parts of objects by non-negative matrix factorization. Nature 401:788-791.
    • (1999) Nature , vol.401 , pp. 788-791
    • Lee, D.D.1    Seung, H.S.2
  • 24
    • 48249151183 scopus 로고    scopus 로고
    • Nonnegative matrix factorization: An analytical and interpretive tool in computational biology
    • doi:10.1371/journal.pcbi.1000029
    • Devarajan K. 2008. Nonnegative matrix factorization: an analytical and interpretive tool in computational biology. PLoS Comput. Biol. 4:e1000029. doi:10.1371/journal.pcbi.1000029.
    • (2008) PLoS Comput. Biol. , vol.4
    • Devarajan, K.1
  • 25
    • 84860370062 scopus 로고    scopus 로고
    • Semi-supervised nonnegative matrix factorization for gene expression deconvolution: A case study
    • Gaujoux R, Seoighe C. 2012. Semi-supervised nonnegative matrix factorization for gene expression deconvolution: a case study. Infect. Genet. Evol. 12:913-921.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 913-921
    • Gaujoux, R.1    Seoighe, C.2
  • 26
    • 33748884394 scopus 로고    scopus 로고
    • Strain dependence of the cell wall-damage induced stimulon in Staphylococcus aureus
    • McCallum N, Spehar G, Bischoff M, Berger-Bachi B. 2006. Strain dependence of the cell wall-damage induced stimulon in Staphylococcus aureus. Biochim. Biophys. Acta 1760:1475-1481.
    • (2006) Biochim. Biophys. Acta , vol.1760 , pp. 1475-1481
    • McCallum, N.1    Spehar, G.2    Bischoff, M.3    Berger-Bachi, B.4
  • 27
    • 0043166886 scopus 로고    scopus 로고
    • Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus
    • Kuroda M, Kuroda H, Oshima T, Takeuchi F, Mori H, Hiramatsu K. 2003. Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus. Mol. Microbiol. 49:807-821.
    • (2003) Mol. Microbiol. , vol.49 , pp. 807-821
    • Kuroda, M.1    Kuroda, H.2    Oshima, T.3    Takeuchi, F.4    Mori, H.5    Hiramatsu, K.6
  • 28
    • 84879008573 scopus 로고    scopus 로고
    • The Staphylococcus aureus thiol/oxidative stress global regulator Spx controls trfA, a gene implicated in cell-wall antibiotic resistance
    • 29 April doi:10.1128/AAC.00220-13
    • Jousselin A, Kelley WL, Barras C, Lew DP, Renzoni A. 29 April 2013. The Staphylococcus aureus thiol/oxidative stress global regulator Spx controls trfA, a gene implicated in cell-wall antibiotic resistance. Antimicrob. Agents Chemother. doi:10.1128/AAC.00220-13.
    • (2013) Antimicrob. Agents Chemother
    • Jousselin, A.1    Kelley, W.L.2    Barras, C.3    Lew, D.P.4    Renzoni, A.5
  • 29
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18:1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 31
  • 33
    • 84875600274 scopus 로고    scopus 로고
    • BamView: Visualizing and interpretation of next-generation sequencing read alignments
    • posting date16 January doi:10 .1093/bib/bbr073
    • Carver T, Harris SR, Otto TD, Berriman M, Parkhill J, McQuillan JA. 16 January 2012, posting date. BamView: visualizing and interpretation of next-generation sequencing read alignments. Brief. Bioinform. doi:10 .1093/bib/bbr073.
    • (2012) Brief. Bioinform
    • Carver, T.1    Harris, S.R.2    Otto, T.D.3    Berriman, M.4    Parkhill, J.5    McQuillan, J.A.6
  • 36
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 39
    • 77954069195 scopus 로고    scopus 로고
    • A flexible R package for nonnegative matrix factorization
    • doi:10.1186/1471-2105-11-367
    • Gaujoux R, Seoighe C. 2010. A flexible R package for nonnegative matrix factorization. BMC Bioinformatics 11:367. doi:10.1186/1471-2105-11-367.
    • (2010) BMC Bioinformatics , vol.11 , pp. 367
    • Gaujoux, R.1    Seoighe, C.2
  • 43
    • 31344439714 scopus 로고    scopus 로고
    • Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycinintermediate-S. aureus-type resistance to vancomycin
    • McAleese F, Wu SW, Sieradzki K, Dunman P, Murphy E, Projan S, Tomasz A. 2006. Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycinintermediate-S. aureus-type resistance to vancomycin. J. Bacteriol. 188: 1120-1133.
    • (2006) J. Bacteriol. , vol.188 , pp. 1120-1133
    • McAleese, F.1    Wu, S.W.2    Sieradzki, K.3    Dunman, P.4    Murphy, E.5    Projan, S.6    Tomasz, A.7
  • 44
    • 0142074781 scopus 로고    scopus 로고
    • Genome-wide transcriptional profiling of the response of Staphylococcus aureus to cell-wall-active antibiotics reveals a cell-wall-stress stimulon
    • Utaida S, Dunman PM, Macapagal D, Murphy E, Projan SJ, Singh VK, Jayaswal RK, Wilkinson BJ. 2003. Genome-wide transcriptional profiling of the response of Staphylococcus aureus to cell-wall-active antibiotics reveals a cell-wall-stress stimulon. Microbiology 149:2719-2732.
    • (2003) Microbiology , vol.149 , pp. 2719-2732
    • Utaida, S.1    Dunman, P.M.2    Macapagal, D.3    Murphy, E.4    Projan, S.J.5    Singh, V.K.6    Jayaswal, R.K.7    Wilkinson, B.J.8
  • 45
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters LS, Storz G. 2009. Regulatory RNAs in bacteria. Cell 136:615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 46
    • 70349737935 scopus 로고    scopus 로고
    • Transcriptome analysis of the responses of Staphylococcus aureus to antimicrobial peptides and characterization of the roles of vraDE and vraSR in antimicrobial resistance
    • doi:10.1186/1471-2164-10-429
    • Pietiainen M, Francois P, Hyyrylainen HL, Tangomo M, Sass V, Sahl HG, Schrenzel J, Kontinen VP. 2009. Transcriptome analysis of the responses of Staphylococcus aureus to antimicrobial peptides and characterization of the roles of vraDE and vraSR in antimicrobial resistance. BMC Genomics 10:429. doi:10.1186/1471-2164-10-429.
    • (2009) BMC Genomics , vol.10 , pp. 429
    • Pietiainen, M.1    Francois, P.2    Hyyrylainen, H.L.3    Tangomo, M.4    Sass, V.5    Sahl, H.G.6    Schrenzel, J.7    Kontinen, V.P.8
  • 48
    • 42049119823 scopus 로고    scopus 로고
    • Different bacterial gene expression patterns and attenuated host immune responses are associated with the evolution of low-level vancomycin resistance during persistent methicillin-resistant Staphylococcus aureus bacteraemia
    • doi:10.1186/1471-2180-8-39
    • Howden BP, Smith DJ, Mansell A, Johnson PD, Ward PB, Stinear TP, Davies JK. 2008. Different bacterial gene expression patterns and attenuated host immune responses are associated with the evolution of low-level vancomycin resistance during persistent methicillin-resistant Staphylococcus aureus bacteraemia. BMC Microbiol. 8:39. doi:10.1186/1471-2180-8-39.
    • (2008) BMC Microbiol. , vol.8 , pp. 39
    • Howden, B.P.1    Smith, D.J.2    Mansell, A.3    Johnson, P.D.4    Ward, P.B.5    Stinear, T.P.6    Davies, J.K.7
  • 49
    • 79953268826 scopus 로고    scopus 로고
    • The Staphylococcus aureus RNome and its commitment to virulence
    • doi:10.1371/journal.ppat.1002006
    • Felden B, Vandenesch F, Bouloc P, Romby P. 2011. The Staphylococcus aureus RNome and its commitment to virulence. PLoS Pathog. 7:e1002006. doi:10.1371/journal.ppat.1002006.
    • (2011) PLoS Pathog. , vol.7
    • Felden, B.1    Vandenesch, F.2    Bouloc, P.3    Romby, P.4
  • 50
    • 33845700514 scopus 로고    scopus 로고
    • Riboswitches as antibacterial drug targets
    • Blount KF, Breaker RR. 2006. Riboswitches as antibacterial drug targets. Nat. Biotechnol. 24:1558-1564.
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1558-1564
    • Blount, K.F.1    Breaker, R.R.2
  • 52
    • 77954079519 scopus 로고    scopus 로고
    • Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways
    • doi:10 .1371/journal.ppat.1000865
    • Mulhbacher J, Brouillette E, Allard M, Fortier LC, Malouin F, Lafontaine DA. 2010. Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways. PLoS Pathog. 6:e1000865. doi:10 .1371/journal.ppat.1000865.
    • (2010) PLoS Pathog. , vol.6
    • Mulhbacher, J.1    Brouillette, E.2    Allard, M.3    Fortier, L.C.4    Malouin, F.5    Lafontaine, D.A.6


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