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Volumn 41, Issue 12, 2013, Pages

Synthesis of 18O-labeled RNA for application to kinetic studies and imaging

Author keywords

[No Author keywords available]

Indexed keywords

OXYGEN 18; PHOSPHATE; PHOSPHORAMIDOUS ACID; SMALL INTERFERING RNA; OXYGEN;

EID: 84880211132     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt344     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E. and Mello, C.C. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391, 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 0028945654 scopus 로고
    • Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution
    • Funatsu, T., Harada, Y., Tokunaga, M., Saito, K. and Yanagida, T. (1995) Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution. Nature, 374, 555-559.
    • (1995) Nature , vol.374 , pp. 555-559
    • Funatsu, T.1    Harada, Y.2    Tokunaga, M.3    Saito, K.4    Yanagida, T.5
  • 4
    • 0037304325 scopus 로고    scopus 로고
    • Quantitative proteomics using mass spectrometry
    • Sechi, S. and Oda, Y. (2003) Quantitative proteomics using mass spectrometry. Curr. Opin. Chem. Biol., 7, 70-77.
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 70-77
    • Sechi, S.1    Oda, Y.2
  • 5
  • 6
    • 0042355182 scopus 로고    scopus 로고
    • Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids
    • Berhane, B.T. and Limbach, P.A. (2003) Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids. J. Mass Spectrom., 38, 872-878.
    • (2003) J. Mass Spectrom. , vol.38 , pp. 872-878
    • Berhane, B.T.1    Limbach, P.A.2
  • 7
    • 15444363305 scopus 로고    scopus 로고
    • 18O labeling and mass spectrometry
    • 18O labeling and mass spectrometry. Anal. Chem., 77, 1891-1895.
    • (2005) Anal. Chem. , vol.77 , pp. 1891-1895
    • Meng, Z.1    Limbach, P.A.2
  • 8
    • 37549011321 scopus 로고    scopus 로고
    • 18O]uridine and its incorporation into oligonucleotides: A new tool for mechanistic study of nucleotidyl transfer reactions by isotope effect analysis
    • 18O]uridine and its incorporation into oligonucleotides: a new tool for mechanistic study of nucleotidyl transfer reactions by isotope effect analysis. J. Org. Chem., 73, 309-311.
    • (2008) J. Org. Chem. , vol.73 , pp. 309-311
    • Dai, Q.1    Frederiksen, J.K.2    Anderson, V.E.3    Harris, M.E.4    Piccirilli, J.A.5
  • 9
    • 0021112661 scopus 로고
    • 18O-labelled deoxydinucleoside phosphate block for incorporation into an oligonucleotide
    • 18O-labelled deoxydinucleoside phosphate block for incorporation into an oligonucleotide. Nucleic Acids Res., 11, 7087-7103.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 7087-7103
    • Potter, B.L.1    Eckstein, F.2    Uznanski, B.3
  • 10
    • 0021097013 scopus 로고
    • Oxygen chiral phosphate in uridylyl(3′!5′)adenosine by oxidation of a phosphite intermediate: Synthesis and absolute configuration
    • Seela, F., Ott, J. and Potter, B.L. (1983) Oxygen chiral phosphate in uridylyl(3′!5′)adenosine by oxidation of a phosphite intermediate: synthesis and absolute configuration. J. Am. Chem. Soc., 105, 5879-5886.
    • (1983) J. Am. Chem. Soc. , vol.105 , pp. 5879-5886
    • Seela, F.1    Ott, J.2    Potter, B.L.3
  • 11
    • 0021148470 scopus 로고
    • Automated solidphase synthesis, separation, and stereochemistry of phosphorothioate analogues of oligodeoxyribonucleotides
    • Stec, W.J., Zon, G., Egan, W. and Stec, B. (1984) Automated solidphase synthesis, separation, and stereochemistry of phosphorothioate analogues of oligodeoxyribonucleotides. J. Am. Chem. Soc., 106, 6077-6079.
    • (1984) J. Am. Chem. Soc. , vol.106 , pp. 6077-6079
    • Stec, W.J.1    Zon, G.2    Egan, W.3    Stec, B.4
  • 12
    • 43349093551 scopus 로고    scopus 로고
    • Oligoribonucleotides with 2′-O-(tert-butyldimethylsilyl) groups
    • Chapter 3, Unit 3.6
    • Bellon, L. (2001) Oligoribonucleotides with 2′-O-(tert- butyldimethylsilyl) groups. Curr. Protoc. Nucleic Acid Chem., Chapter 3, Unit 3.6.
    • (2001) Curr. Protoc. Nucleic Acid Chem
    • Bellon, L.1
  • 13
    • 84880229898 scopus 로고    scopus 로고
    • High precision isotope micro-imaging of materials
    • Yurimoto, H., Nagashima, K. and Kunihiro, T. (2003) High precision isotope micro-imaging of materials. Appl. Surf. Sci., 793, 203-204.
    • (2003) Appl. Surf. Sci. , vol.793 , pp. 203-204
    • Yurimoto, H.1    Nagashima, K.2    Kunihiro, T.3
  • 14
    • 13144287449 scopus 로고    scopus 로고
    • Microscopic oxygen isotopic homogeneity/heterogeneity in the matrix of the Vigarano CV3 chondrite
    • Kunihiro, T., Nagashima, K. and Yurimoto, H. (2005) Microscopic oxygen isotopic homogeneity/heterogeneity in the matrix of the Vigarano CV3 chondrite. Geochim. Cosmochim. Acta, 69, 763-773.
    • (2005) Geochim. Cosmochim. Acta , vol.69 , pp. 763-773
    • Kunihiro, T.1    Nagashima, K.2    Yurimoto, H.3
  • 15
    • 0025250111 scopus 로고
    • 3H-1, 2-Benzodithiole-3-one 1, 1-dioxide as an improved sulfurizing reagent in the solid-phase synthesis of oligodeoxyribonucleoside phosphorothioates
    • Iyer, R.P., Egan, W., Regan, J.B. and Beaucage, S.L. (1990) 3H-1, 2-Benzodithiole-3-one 1, 1-dioxide as an improved sulfurizing reagent in the solid-phase synthesis of oligodeoxyribonucleoside phosphorothioates. J. Am. Chem. Soc., 112, 1253-1254.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 1253-1254
    • Iyer, R.P.1    Egan, W.2    Regan, J.B.3    Beaucage, S.L.4
  • 16
    • 0025161168 scopus 로고
    • The automated synthesis of sulfur-containing oligodeoxyribonucleotides using 3H-1, 2-benzodithiol-3-one 1, 1-dioxide as a sulfur-transfer reagent
    • Iyer, R.P., Phillips, L.R., Egan, W., Regan, J.B. and Beaucage, S.L. (1990) The automated synthesis of sulfur-containing oligodeoxyribonucleotides using 3H-1, 2-benzodithiol-3-one 1, 1-dioxide as a sulfur-transfer reagent. J. Org. Chem., 55, 4693-4699.
    • (1990) J. Org. Chem. , vol.55 , pp. 4693-4699
    • Iyer, R.P.1    Phillips, L.R.2    Egan, W.3    Regan, J.B.4    Beaucage, S.L.5
  • 17
    • 36948998836 scopus 로고    scopus 로고
    • Nucleoside and oligonucleoside boranophosphates: Chemistry and properties
    • Li, P., Sergueeva, Z.A., Dobrikov, M. and Shaw, B.R. (2007) Nucleoside and oligonucleoside boranophosphates: chemistry and properties. Chem. Rev., 107, 4746-4796.
    • (2007) Chem. Rev. , vol.107 , pp. 4746-4796
    • Li, P.1    Sergueeva, Z.A.2    Dobrikov, M.3    Shaw, B.R.4
  • 19
    • 52449103310 scopus 로고    scopus 로고
    • Improved serum stability and biophysical properties of siRNAs following chemical modifications
    • Cho, I.S., Kim, J., Lim, D.H., Ahn, H.C., Kim, H., Lee, K.B. and Lee, Y.S. (2008) Improved serum stability and biophysical properties of siRNAs following chemical modifications. Biotechnol. Lett., 30, 1901-1908.
    • (2008) Biotechnol. Lett. , vol.30 , pp. 1901-1908
    • Cho, I.S.1    Kim, J.2    Lim, D.H.3    Ahn, H.C.4    Kim, H.5    Lee, K.B.6    Lee, Y.S.7
  • 20
    • 0028945546 scopus 로고
    • Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes
    • Gray, D.M., Hung, S.H. and Johnson, K.H. (1995) Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes. Methods Enzymol., 246, 19-34.
    • (1995) Methods Enzymol. , vol.246 , pp. 19-34
    • Gray, D.M.1    Hung, S.H.2    Johnson, K.H.3
  • 22
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K. and Tuschl, T. (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature, 411, 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 23
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNA and siRNAs
    • Valencia-Sanchez, M.A., Liu, J., Hannon, G.J. and Parker, R. (2006) Control of translation and mRNA degradation by miRNA and siRNAs. Genes Dev., 20, 515-524.
    • (2006) Genes Dev. , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.A.1    Liu, J.2    Hannon, G.J.3    Parker, R.4
  • 24
    • 33751099034 scopus 로고    scopus 로고
    • RNAi therapeutics: A potential new class of pharmaceutical drugs
    • Bumcrot, D., Manoharan, M., Koteliansky, V. and Sah, D.W.Y. (2006) RNAi therapeutics: a potential new class of pharmaceutical drugs. Nat. Chem. Biol., 2, 711-719.
    • (2006) Nat. Chem. Biol. , vol.2 , pp. 711-719
    • Bumcrot, D.1    Manoharan, M.2    Koteliansky, V.3    Sah, D.W.Y.4
  • 25
    • 0037031576 scopus 로고    scopus 로고
    • Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
    • Martinez, J., Patkaniowska, A., Urlaub, H., Luhrmann, R. and Tuschl, T. (2002) Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell, 110, 563-574.
    • (2002) Cell , vol.110 , pp. 563-574
    • Martinez, J.1    Patkaniowska, A.2    Urlaub, H.3    Luhrmann, R.4    Tuschl, T.5
  • 26
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • Schwarz, D.S., Hutvagner, G., Du, T., Xu, Z., Aronin, N. and Zamore, P.D. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115, 199-208.
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3    Xu, Z.4    Aronin, N.5    Zamore, P.D.6
  • 27
    • 39749180868 scopus 로고    scopus 로고
    • Geographical origin of polished rice based on multiple element and stable isotope analyses
    • Suzuki, Y., Chikaraishi, Y., Ogawa, N.O., Ohkouchi, N. and Korenaga, T. (2008) Geographical origin of polished rice based on multiple element and stable isotope analyses. Food Chem., 109, 470-475.
    • (2008) Food Chem. , vol.109 , pp. 470-475
    • Suzuki, Y.1    Chikaraishi, Y.2    Ogawa, N.O.3    Ohkouchi, N.4    Korenaga, T.5
  • 28
    • 79960562136 scopus 로고    scopus 로고
    • Recent developments in the use of isotope ratio mass spectrometry in sports drug testing
    • Piper, T., Emery, C. and Saugy, M. (2011) Recent developments in the use of isotope ratio mass spectrometry in sports drug testing. Anal. Bioanal. Chem., 401, 433-447.
    • (2011) Anal. Bioanal. Chem. , vol.401 , pp. 433-447
    • Piper, T.1    Emery, C.2    Saugy, M.3
  • 29
    • 44949213072 scopus 로고    scopus 로고
    • Towards absolute quantification of therapeutic monoclonal antibody in serum by LC-MS/MS using isotope-labeled antibody standard and protein cleavage isotope dilution mass spectrometry
    • Heudi, O., Barteau, S., Zimmer, D., Schmidt, J., Bill, K., Lehmann, N., Bauer, C. and Kretz, O. (2008) Towards absolute quantification of therapeutic monoclonal antibody in serum by LC-MS/MS using isotope-labeled antibody standard and protein cleavage isotope dilution mass spectrometry. Anal. Chem., 80, 4200-4207.
    • (2008) Anal. Chem. , vol.80 , pp. 4200-4207
    • Heudi, O.1    Barteau, S.2    Zimmer, D.3    Schmidt, J.4    Bill, K.5    Lehmann, N.6    Bauer, C.7    Kretz, O.8
  • 30
    • 79952545933 scopus 로고    scopus 로고
    • Determination of the antiretroviral drug tenofovir in plasma from HIV-infected adults by ultrafast isotope dilution MALDI-triple quadrupole tandem mass spectrometry
    • Meesters, R.J., van Kampen, J.J., Scheuer, R.D., van der Ende, M.E., Gruters, R.A. and Luider, T.M. (2011) Determination of the antiretroviral drug tenofovir in plasma from HIV-infected adults by ultrafast isotope dilution MALDI-triple quadrupole tandem mass spectrometry. J. Mass Spectrom., 46, 282-289.
    • (2011) J. Mass Spectrom. , vol.46 , pp. 282-289
    • Meesters, R.J.1    Van Kampen, J.J.2    Scheuer, R.D.3    Van Der Ende, M.E.4    Gruters, R.A.5    Luider, T.M.6
  • 32
    • 79551588982 scopus 로고    scopus 로고
    • Hydrogen isotope ratios in lunar rocks indicate delivery of cometary water to the Moon
    • Greenwood, J.P., Itoh, S., Sakamoto, N., Warren, P., Taylor, L. and Yurimoto, H. (2011) Hydrogen isotope ratios in lunar rocks indicate delivery of cometary water to the Moon. Nat. Geosci., 4, 79-82.
    • (2011) Nat. Geosci. , vol.4 , pp. 79-82
    • Greenwood, J.P.1    Itoh, S.2    Sakamoto, N.3    Warren, P.4    Taylor, L.5    Yurimoto, H.6
  • 34
    • 24344500241 scopus 로고    scopus 로고
    • Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing
    • Harborth, J., Elbashir, S.M., Vandenburgh, K., Manninga, H., Scaringe, S.A., Weber, K. and Tuschl, T. (2003) Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing. Antisense Nucleic Acid Drug Dev., 13, 83-105.
    • (2003) Antisense Nucleic Acid Drug Dev. , vol.13 , pp. 83-105
    • Harborth, J.1    Elbashir, S.M.2    Vandenburgh, K.3    Manninga, H.4    Scaringe, S.A.5    Weber, K.6    Tuschl, T.7


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