Sebacinales everywhere: Previously overlooked ubiquitous fungal endophytes

PLoS ONE

Volumn 6, Issue 2, 2011, Pages

  Weiß, Michael ^a   Sýkorová, Zuzana ^b,d   Garnica, Sigisfredo ^a   Riess, Kai ^a   Martos, Florent ^c   Krause, Cornelia ^a   Oberwinkler, Franz ^a   Bauer, Robert ^a   Redecker, Dirk ^b,e  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b UNIVERSITY OF BASEL   (Switzerland)

^c UNIVERSITÉ DE LA RÉUNION   (France)

^d INSTITUTE OF BOTANY   (Czech Republic)

^e UNIVERSITÉ DE BOURGOGNE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANGIOSPERM; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; ECOLOGICAL SPECIALIZATION; ECTOMYCORRHIZA; ELECTRON MICROSCOPY; ENDOPHYTE; FUNGAL DETECTION; FUNGUS; LIVERWORT; MAIZE; MOLECULAR PHYLOGENY; MOSS; NONHUMAN; NORTH AFRICA; NUCLEOTIDE SEQUENCE; ORGANISMS BY GEOGRAPHICAL DISTRIBUTION; PLANT FUNGUS INTERACTION; PLANT GROWTH; PLANT MODEL; PLANT ROOT; SEBACINALES; SEQUENCE ANALYSIS; SPECIES DIVERSITY; WHEAT; BASIDIOMYCETES; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EVOLUTION; PHYLOGENY; POLYMERASE CHAIN REACTION; ULTRASTRUCTURE;

ARABIDOPSIS THALIANA; BASIDIOMYCOTA; BRYOPHYTES; FUNGI; MAGNOLIOPHYTA; MARCHANTIOPHYTA; PTERIDOPHYTA; SEBACINALES; TRITICUM AESTIVUM; ZEA MAYS;

FUNGAL DNA;

BASIDIOMYCOTA; DNA, FUNGAL; ENDOPHYTES; EVOLUTION, MOLECULAR; PHYLOGENY; PLANT ROOTS; POLYMERASE CHAIN REACTION; TRITICUM;

EID: 79951925525     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016793     Document Type: Article

References (43)

1. Brundrett M, (2009) Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant Soil 320: 37-77.
2. Weiß M, Selosse M-A, Rexer K-H, Urban A, Oberwinkler F, (2004) Sebacinales: a hitherto overlooked cosm of heterobasidiomycetes with a broad mycorrhizal potential. Mycol Res 108: 1003-1010.
3. Glen M, Tommerup IC, Bougher NL, O'Brien PA, (2002) Are Sebacinaceae common and widespread ectomycorrhizal associates of Eucalyptus species in Australian forests? Mycorrhiza 12: 243-247.
4. Urban A, Weiß M, Bauer R, (2003) Ectomycorrhizae involving sebacinoid mycobionts. Mycol Res 107: 3-14.
5. Selosse M-A, Weiß M, Jany J-L, Tillier A, (2002) Communities and populations of sebacinoid basidiomycetes associated with the achlorophyllous orchid Neottia nidus-avis (L.) L.C.M. Rich. and neighbouring tree ectomycorrhizae. Mol Ecol 11: 1831-1844.
6. Kottke I, Beiter A, Weiß M, Haug I, Oberwinkler F, et al. (2003) Heterobasidiomycetes form symbiotic associations with hepatics: Jungermanniales have sebacinoid mycobionts while Aneura pinguis (Metzgeriales) is associated with a Tulasnella species. Mycol Res 107: 957-968.
7. Selosse M-A, Setaro S, Glatard F, Richard F, Urcelay C, et al. (2007) Sebacinales are common mycorrhizal associates of Ericaceae. New Phytol 174: 864-878.
8. Setaro S, Weiß M, Oberwinkler F, Kottke I, (2006) Sebacinales form ectendomycorrhizas with Cavendishia nobilis, a member of the Andean clade of Ericaceae, in the mountain rain forest of southern Ecuador. New Phytol 169: 355-365.
9. McKendrick SL, Leake JR, Taylor DL, Read DJ, (2002) Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirement for locally distributed Sebacina spp. New Phytol 154: 233-247.
10. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111: 509-547.
11. Wilson D, (1995) Endophyte - the evolution of a term, and clarification of its use and definition. Oikos 73: 274-276.
12. Rodriguez RJ, White JF, Arnold AE, Redman RS, (2009) Fungal endophytes: diversity and functional roles. New Phytol 182: 314-330.
13. Spatafora JW, Sung GH, Sung JM, Hywel-Jones NL, White JF, (2007) Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes. Mol Ecol 16: 1701-1711.
14. Redman RS, Sheehan KB, Stout RG, Rodriguez RJ, Henson JM, (2002) Thermotolerance generated by plant/fungal symbiosis. Science 298: 1581.
15. Deshmukh S, Hückelhoven R, Schäfer P, Imani J, Sharma M, et al. (2006) The root endophytic fungus Piriformospora indica requires host cell death for proliferation during mutualistic symbiosis with barley. Proc Natl Acad Sci U S A 103: 18450-18457.
16. Varma A, Singh A, Sudha, Sahay NS, Sharma J, et al. (2001) Piriformospora indica: an axenically culturable mycorrhiza-like endosymbiotic fungus. In: Hock B, editors. The Mycota, Vol IX: Fungal Associations Berlin Springer pp. 125-150.
17. Waller F, Achatz B, Baltruschat H, Fodor J, Becker K, et al. (2005) The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield. Proc Natl Acad Sci U S A 102: 13386-13391.
18. Barazani O, Benderoth M, Groten K, Kuhlemeier C, Baldwin IT, (2005) Piriformospora indica and Sebacina vermifera increase growth performance at the expense of herbivore resistance in Nicotiana attenuata. Oecologia 146: 234-243.
19. Yadav V, Kumar M, Deep DK, Kumar H, Sharma R, et al. (2010) A phosphate transporter from the root endophytic fungus Piriformospora indica plays a role in phosphate transport to the host plant. J Biol Chemistry 285: 26532-26544.
20. Schäfer P, Khatabi B, Kogel K-H, (2007) Root cell death and systemic effects of Piriformospora indica: a study on mutualism. FEMS Microbiol Lett 275: 1-7.
21. Varma A, Verma S, Sudha, Sahay N, Bütehorn B, et al. (1999) Piriformospora indica, a cultivable plant-growth-promoting root endopyte. Appl Environ Microbiol 65: 2741-2744.
22. Druege U, Baltruschat H, Franken P, (2007) Piriformospora indica promotes adventitious root formation in cuttings. Sci Hortic 112: 422-426.
23. Neubert K, Mendgen K, Brinkmann H, Wirsel SGR, (2006) Only a few fungal species dominate highly diverse mycofloras associated with the common reed. Appl Environ Microbiol 72: 1118-1128.
24. Selosse M-A, Dubois M-P, Alvarez N, (2009) Do Sebacinales commonly associate with plant roots as endophytes? Mycol Res 113: 1062-1069.
25. Cavender-Bares J, Kozak KH, Fine PVA, Kembel SW, (2009) The merging of community ecology and phylogenetic biology. Ecol Lett 12: 693-715.
26. Emerson BC, Gillespie RG, (2008) Phylogenetic analysis of community assembly and structure over space and time. Trends Ecol Evol 23: 619-630.
27. Warcup JH, (1988) Mycorrhizal associations of isolates of Sebacina vermifera. New Phytol 110: 227-231.
28. Verma S, Varma A, Rexer K-H, Hassel A, Kost G, et al. (1998) Piriformospora indica, gen. et sp. nov., a new root-colonizing fungus. Mycologia 90: 896-903.
29. Peškan-Berghöfer T, Shahollari B, Giong PH, Hehl S, Markert C, et al. (2004) Association of Piriformospora indica with Arabidopsis thaliana roots represents a novel system to study beneficial plant-microbe interactions and involves early plant protein modifications in the endoplasmic reticulum and at the plasma membrane. Physiol Plant 122: 465-477.
30. Stein E, Molitor A, Kogel KH, Waller F, (2008) Systemic resistance in Arabidopsis conferred by the mycorrhizal fungus Piriformospora indica requires jasmonic acid signaling and the cytoplasmic function of NPR1. Plant Cell Physiol 49: 1747-1751.
31. Weiß M, Yang ZL, Oberwinkler F, (1998) Molecular phylogenetic studies in the genus Amanita. Can J Bot 76: 1170-1179.
32. Gardes M, Bruns TD, (1993) ITS primers with enhanced specificity for basidiomycetes -application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
33. Cullings K, (1994) Molecular phylogeny of the Monotropoideae (Ericaceae) with a note on the placement of the Pyroloideae. J Evol Biol 7: 501-516.
34. O'Donnell K, (1993) Fusarium and its near relatives. In: Reynolds DR, Taylor JW, editors. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics Wallingford CAB International pp. 225-233.
35. Burt A, Carter DA, Koenig GL, White TJ, Taylor JW, (1996) Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis. Proc Natl Acad Sci U S A 93: 770-773.
36. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-Blast: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
37. Zhang Z, Schwartz S, Wagner L, Miller W, (2000) A greedy algorithm for aligning DNA sequences. J Comput Biol 7: 203-214.
38. Katoh K, Toh H, (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 9: 286-298.
39. Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
40. Felsenstein J, (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
41. Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
42. Colwell RK, Mao CX, Chang J, (2004) Interpolating, extrapolating, and comparing incidence-based species accumulation curves. Ecology 85: 2717-2727.
43. Spurr AR, (1969) A low-viscosity epoxy resin embedding mediumfor electron microscopy. J Ultrastruct Res 26: 31-43.