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Volumn 288, Issue 28, 2013, Pages 20184-20194

Structural basis for activity regulation and substrate preference of clostridial collagenases G, H, and T

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVITY REGULATION; CALCIUM BINDING; COLLAGENOLYTIC ACTIVITIES; ENZYMATIC ACTIVITIES; INHIBITOR DESIGN; STRUCTURAL BASIS; SUBSTRATE SELECTIVITY; SUBSTRATE SPECIFICITY;

EID: 84880061207     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.448548     Document Type: Article
Times cited : (77)

References (47)
  • 1
    • 1942486733 scopus 로고    scopus 로고
    • Insights in metabolism and toxin production from the complete genome sequence of Clostridium tetani
    • DOI 10.1016/j.anaerobe.2003.08.001, PII S107599640300132X
    • Brüggemann, H., and Gottschalk, G. (2004) Insights in metabolism and toxin production from the complete genome sequence of Clostridium tetani. Anaerobe 10, 53-68 (Pubitemid 38519805)
    • (2004) Anaerobe , vol.10 , Issue.2 , pp. 53-68
    • Bruggemann, H.1    Gottschalk, G.2
  • 3
    • 0034862658 scopus 로고    scopus 로고
    • Clostridial hydrolytic enzymes degrading extracellular components
    • DOI 10.1016/S0041-0101(01)00163-5, PII S0041010101001635
    • Matsushita, O., and Okabe, A. (2001) Clostridial hydrolytic enzymes degrading extracellular components. Toxicon 39, 1769-1780 (Pubitemid 32787008)
    • (2001) Toxicon , vol.39 , Issue.11 , pp. 1769-1780
    • Matsushita, O.1    Okabe, A.2
  • 6
    • 1242292972 scopus 로고    scopus 로고
    • Collagenolytic proteases from bacteria
    • Watanabe, K. (2004) Collagenolytic proteases from bacteria. Appl. Microbiol. Biotechnol. 63, 520-526
    • (2004) Appl. Microbiol. Biotechnol. , vol.63 , pp. 520-526
    • Watanabe, K.1
  • 7
    • 80455122899 scopus 로고    scopus 로고
    • Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis
    • Eckhard, U., Schönauer, E., Nüss, D., and Brandstetter, H. (2011) Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis. Nat. Struct. Mol. Biol. 18, 1109-1114
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1109-1114
    • Eckhard, U.1    Schönauer, E.2    Nüss, D.3    Brandstetter, H.4
  • 9
    • 0034297101 scopus 로고    scopus 로고
    • Matrix metalloproteinases in wound repair
    • (review)
    • Ravanti, L., and Kähäri, V. M. (2000) Matrix metalloproteinases in wound repair (review). Int. J. Mol. Med. 6, 391-407
    • (2000) Int. J. Mol. Med. , vol.6 , pp. 391-407
    • Ravanti, L.1    Kähäri, V.M.2
  • 10
    • 0021766906 scopus 로고
    • Characterization of the individual collagenases from Clostridium histolyticum
    • Bond, M. D., and Van Wart, H. E. (1984) Characterization of the individual collagenases from Clostridium histolyticum. Biochemistry 23, 3085-3091
    • (1984) Biochemistry , vol.23 , pp. 3085-3091
    • Bond, M.D.1    Van Wart, H.E.2
  • 12
    • 0022412297 scopus 로고
    • Mode of hydrolysis of collagen-like peptides by class I and class II Clostridium histolyticum collagenases. Evidence for both endopeptidase and tripeptidylcarboxypeptidase activities
    • Mookhtiar, K. A., Steinbrink, D. R., and Van Wart, H. E. (1985) Mode of hydrolysis of collagen-like peptides by class I and class II Clostridium histolyticum collagenases. Evidence for both endopeptidase and tripeptidylcarboxypeptidase activities. Biochemistry 24, 6527- 6533
    • (1985) Biochemistry , vol.24 , pp. 6527-6533
    • Mookhtiar, K.A.1    Steinbrink, D.R.2    Van Wart, H.E.3
  • 13
    • 0019880981 scopus 로고
    • A continuous spectrophotometric assay for Clostridium histolyticum collagenase
    • Van Wart, H. E., and Steinbrink, D. R. (1981) A continuous spectrophotometric assay for Clostridium histolyticum collagenase. Anal. Biochem. 113, 356-365
    • (1981) Anal. Biochem. , vol.113 , pp. 356-365
    • Van Wart, H.E.1    Steinbrink, D.R.2
  • 14
    • 0344942600 scopus 로고    scopus 로고
    • A bacterial collagen-binding domain with novel calcium-binding motif controls domain orientation
    • DOI 10.1093/emboj/cdg172
    • Wilson, J. J., Matsushita, O., Okabe, A., and Sakon, J. (2003) A bacterial collagen-binding domain with novel calcium-binding motif controls domain orientation. EMBO J. 22, 1743-1752 (Pubitemid 36460131)
    • (2003) EMBO Journal , vol.22 , Issue.8 , pp. 1743-1752
    • Wilson, J.J.1    Matsushita, O.2    Okabe, A.3    Sakon, J.4
  • 15
    • 79955514333 scopus 로고    scopus 로고
    • The treatment of Dupuytren disease
    • Desai, S. S., and Hentz, V. R. (2011) The treatment of Dupuytren disease. J. Hand Surg. Am. 36, 936-942
    • (2011) J. Hand Surg. Am. , vol.36 , pp. 936-942
    • Desai, S.S.1    Hentz, V.R.2
  • 16
    • 84880063374 scopus 로고    scopus 로고
    • author reply 2579-2580
    • Zhang, P., and Qin, L. (2009) N. Engl. J. Med. 361, 2578-2579; author reply 2579-2580
    • (2009) N. Engl. J. Med. , vol.361 , pp. 2578-2579
    • Zhang, P.1    Qin, L.2
  • 17
    • 81455132462 scopus 로고    scopus 로고
    • Characterization and functional assessment of Clostridium histolyticum class I (C1) collagenases and the synergistic degradation of native collagen in enzyme mixtures containing class II (C2) collagenase
    • Breite, A. G., McCarthy, R. C., and Dwulet, F. E. (2011) Characterization and functional assessment of Clostridium histolyticum class I (C1) collagenases and the synergistic degradation of native collagen in enzyme mixtures containing class II (C2) collagenase. Transplant Proc. 43, 3171-3175
    • (2011) Transplant Proc. , vol.43 , pp. 3171-3175
    • Breite, A.G.1    McCarthy, R.C.2    Dwulet, F.E.3
  • 19
    • 74549222674 scopus 로고    scopus 로고
    • Collagenase Santyl ointment. A selective agent for wound debridement
    • Shi, L., and Carson, D. (2009) Collagenase Santyl ointment. A selective agent for wound debridement. J. Wound Ostomy Continence Nurs. 36, S12-16
    • (2009) J. Wound Ostomy Continence Nurs. , vol.36
    • Shi, L.1    Carson, D.2
  • 22
    • 80053623070 scopus 로고    scopus 로고
    • Polycystic kidney disease-like domains of clostridial collagenases and their role in collagen recruitment
    • Eckhard, U., and Brandstetter, H. (2011) Polycystic kidney disease-like domains of clostridial collagenases and their role in collagen recruitment. Biol. Chem. 392, 1039-1045
    • (2011) Biol. Chem. , vol.392 , pp. 1039-1045
    • Eckhard, U.1    Brandstetter, H.2
  • 23
    • 0043122944 scopus 로고    scopus 로고
    • ExPASy: The proteomics server for in-depth protein knowledge and analysis
    • DOI 10.1093/nar/gkg563
    • Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., and Bairoch, A. (2003) ExPASy. The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31, 3784-3788 (Pubitemid 37442246)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3784-3788
    • Gasteiger, E.1    Gattiker, A.2    Hoogland, C.3    Ivanyi, I.4    Appel, R.D.5    Bairoch, A.6
  • 24
    • 33847633917 scopus 로고    scopus 로고
    • A standardized approach for accurate quantification of murein hydrolase activity in high-throughput assays
    • DOI 10.1016/j.jbbm.2006.10.009, PII S0165022X06002053
    • Briers, Y., Lavigne, R., Volckaert, G., and Hertveldt, K. (2007) A standardized approach for accurate quantification of murein hydrolase activity in high-throughput assays. J. Biochem. Biophys. Methods 70, 531-533 (Pubitemid 46356578)
    • (2007) Journal of Biochemical and Biophysical Methods , vol.70 , Issue.3 , pp. 531-533
    • Briers, Y.1    Lavigne, R.2    Volckaert, G.3    Hertveldt, K.4
  • 25
    • 33644874235 scopus 로고    scopus 로고
    • The integration of macromolecular diffraction data
    • Leslie, A. G. (2006) The integration of macromolecular diffraction data. Acta Crystallogr. D Biol. Crystallogr. 62, 48-57
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 48-57
    • Leslie, A.G.1
  • 26
    • 79953747244 scopus 로고    scopus 로고
    • An introduction to data reduction. Space-group determination, scaling and intensity statistics
    • Evans, P. R. (2011) An introduction to data reduction. Space-group determination, scaling and intensity statistics. Acta Crystallogr. D Biol. Crystallogr. 67, 282-292
    • (2011) Acta Crystallogr. D Biol. Crystallogr. , vol.67 , pp. 282-292
    • Evans, P.R.1
  • 27
    • 0028103275 scopus 로고
    • The CCP4 suite. Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite. Programs for protein crystallography. Acta Crystallogr.DBiol. Crystallogr. 50, 760-763
    • (1994) Acta Crystallogr.DBiol. Crystallogr. , vol.50 , pp. 760-763
  • 31
    • 33646260450 scopus 로고    scopus 로고
    • Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
    • Painter, J., and Merritt, E. A. (2006) Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr. D Biol. Crystallogr. 62, 439-450
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 439-450
    • Painter, J.1    Merritt, E.A.2
  • 33
    • 13544251502 scopus 로고    scopus 로고
    • The case for open-source software in drug discovery
    • DeLano, W. L. (2005) The case for open-source software in drug discovery. Drug Discov. Today 10, 213-217
    • (2005) Drug Discov. Today , vol.10 , pp. 213-217
    • DeLano, W.L.1
  • 34
    • 34548232365 scopus 로고    scopus 로고
    • Inference of Macromolecular Assemblies from Crystalline State
    • DOI 10.1016/j.jmb.2007.05.022, PII S0022283607006420
    • Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797 (Pubitemid 47321791)
    • (2007) Journal of Molecular Biology , vol.372 , Issue.3 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 35
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • DOI 10.1006/jmbi.1993.1351
    • Laskowski, R. A., Moss, D. S., and Thornton, J. M. (1993) Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067 (Pubitemid 23209879)
    • (1993) Journal of Molecular Biology , vol.231 , Issue.4 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3
  • 37
    • 34547593171 scopus 로고    scopus 로고
    • NQ-Flipper. Recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures
    • Weichenberger, C. X., and Sippl, M. J. (2007) NQ-Flipper. Recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures. Nucleic Acids Res. 35, W403-W406
    • (2007) Nucleic Acids Res. , vol.35
    • Weichenberger, C.X.1    Sippl, M.J.2
  • 38
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST. A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 39
    • 58249106774 scopus 로고    scopus 로고
    • Biochemical characterization of the catalytic domains of three different Clostridial collagenases
    • Eckhard, U., Schönauer, E., Ducka, P., Briza, P., Nüss, D., and Brandstetter, H. (2009) Biochemical characterization of the catalytic domains of three different Clostridial collagenases. Biol. Chem. 390, 11-18
    • (2009) Biol. Chem. , vol.390 , pp. 11-18
    • Eckhard, U.1    Schönauer, E.2    Ducka, P.3    Briza, P.4    Nüss, D.5    Brandstetter, H.6
  • 40
    • 0026538063 scopus 로고
    • Identification of Clostridium histolyticum collagenase hyperreactive sites in type I, II, and III collagens. Lack of correlation with local triple helical stability
    • French, M. F., Bhown, A., and Van Wart, H. E. (1992) Identification of Clostridium histolyticum collagenase hyperreactive sites in type I, II, and III collagens. Lack of correlation with local triple helical stability. J. Protein Chem. 11, 83-97
    • (1992) J. Protein Chem. , vol.11 , pp. 83-97
    • French, M.F.1    Bhown, A.2    Van Wart, H.E.3
  • 41
    • 0022411969 scopus 로고
    • Complementary substrate specificities of class I and class II collagenases from Clostridium histolyticum
    • DOI 10.1021/bi00344a032
    • Van Wart, H. E., and Steinbrink, D. R. (1985) Complementary substrate specificities of class I and class II collagenases from Clostridium histolyticum. Biochemistry 24, 6520-6526 (Pubitemid 16207125)
    • (1985) Biochemistry , vol.24 , Issue.23 , pp. 6520-6526
    • Van Wart, H.E.1    Steinbrink, D.R.2
  • 43
    • 17244364283 scopus 로고    scopus 로고
    • Proteases universally recognize beta strands in their active sites
    • DOI 10.1021/cr040669e
    • Tyndall, J. D., Nall, T., and Fairlie, D. P. (2005) Proteases universally recognize β strands in their active sites. Chem. Rev. 105, 973-999 (Pubitemid 40527381)
    • (2005) Chemical Reviews , vol.105 , Issue.3 , pp. 973-999
    • Tyndall, J.D.A.1    Nall, T.2    Fairlie, D.P.3
  • 45
    • 0027287308 scopus 로고
    • Implications of the three-dimensional structure of astacin for the structure and function of the astacin family of zinc-endopeptidases
    • Stöcker, W., Gomis-Rüth, F. X., Bode, W., and Zwilling, R. (1993) Implications of the three-dimensional structure of astacin for the structure and function of the astacin family of zinc-endopeptidases. Eur. J. Biochem. 214, 215-231 (Pubitemid 23168537)
    • (1993) European Journal of Biochemistry , vol.214 , Issue.1 , pp. 215-231
    • Stocker, W.1    Gomis-Ruth, F.-X.2    Bode, W.3    Zwilling, R.4
  • 47
    • 0037314068 scopus 로고    scopus 로고
    • TopDraw. A sketchpad for protein structure topology cartoons
    • Bond, C. S. (2003) TopDraw. A sketchpad for protein structure topology cartoons. Bioinformatics 19, 311-312
    • (2003) Bioinformatics , vol.19 , pp. 311-312
    • Bond, C.S.1


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