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Volumn 252, Issue , 2013, Pages 65-85

Hybrid continuum-particle method for fluctuating lipid bilayer membranes with diffusing protein inclusions

Author keywords

Biophysics; Computational fluid dynamics; Lipid bilayer membranes; Membrane proteins; Statistical mechanics; Stochastic numerical methods

Indexed keywords

COMPUTATIONAL FLUID DYNAMICS; CYTOLOGY; LIPID BILAYERS; NUMERICAL METHODS; STATISTICAL MECHANICS; STOCHASTIC SYSTEMS; TURBULENT FLOW;

EID: 84880005902     PISSN: 00219991     EISSN: 10902716     Source Type: Journal    
DOI: 10.1016/j.jcp.2013.06.016     Document Type: Article
Times cited : (36)

References (39)
  • 1
    • 34248594739 scopus 로고    scopus 로고
    • A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales
    • Atzberger P.J., Kramer P.R., Peskin C.S. A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales. J. Comput. Phys. 2007, 224:1255-1292.
    • (2007) J. Comput. Phys. , vol.224 , pp. 1255-1292
    • Atzberger, P.J.1    Kramer, P.R.2    Peskin, C.S.3
  • 3
    • 0001482698 scopus 로고
    • Frequency spectrum of the flicker phenomenon in erythrocytes
    • Brochard F., Lennon J. Frequency spectrum of the flicker phenomenon in erythrocytes. J. Phys. 1975, 36:1035-1047.
    • (1975) J. Phys. , vol.36 , pp. 1035-1047
    • Brochard, F.1    Lennon, J.2
  • 4
    • 43949090857 scopus 로고    scopus 로고
    • Elastic modeling of biomembranes and lipid bilayers
    • Brown F.L. Elastic modeling of biomembranes and lipid bilayers. Annu. Rev. Phys. Chem. 2008, 59:685-712.
    • (2008) Annu. Rev. Phys. Chem. , vol.59 , pp. 685-712
    • Brown, F.L.1
  • 5
    • 80052871176 scopus 로고    scopus 로고
    • Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects
    • Brown F.L.H. Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects. Q. Rev. Biophys. 2011, 44:391-432.
    • (2011) Q. Rev. Biophys. , vol.44 , pp. 391-432
    • Brown, F.L.H.1
  • 8
    • 23644451510 scopus 로고    scopus 로고
    • A possible unifying principle for mechanosensation
    • Ching K. A possible unifying principle for mechanosensation. Nature 2005, 436:647-654.
    • (2005) Nature , vol.436 , pp. 647-654
    • Ching, K.1
  • 9
    • 84968470212 scopus 로고
    • An algorithm for the machine calculation of complex Fourier series
    • Cooley J.W., Tukey J.W. An algorithm for the machine calculation of complex Fourier series. Math. Comput. 1965, 19:297-301.
    • (1965) Math. Comput. , vol.19 , pp. 297-301
    • Cooley, J.W.1    Tukey, J.W.2
  • 10
    • 48249134102 scopus 로고    scopus 로고
    • Mediation, modulation, and consequences of membrane-cytoskeleton interactions
    • Doherty G.J., McMahon H.T. Mediation, modulation, and consequences of membrane-cytoskeleton interactions. Annu. Rev. Biophys. 2008, 37:65-95.
    • (2008) Annu. Rev. Biophys. , vol.37 , pp. 65-95
    • Doherty, G.J.1    McMahon, H.T.2
  • 11
    • 1842610479 scopus 로고    scopus 로고
    • Gating the bacterial mechanosensitive channels: MscS a new paradigm?
    • Edwards M.D., Booth I.R., Miller S. Gating the bacterial mechanosensitive channels: MscS a new paradigm?. Curr. Opin. Microbiol. 2004, 7:163-167.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 163-167
    • Edwards, M.D.1    Booth, I.R.2    Miller, S.3
  • 12
    • 28444437064 scopus 로고    scopus 로고
    • Membranes are more mosaic than fluid
    • Engelman D.M. Membranes are more mosaic than fluid. Nature 2005, 438:578-580.
    • (2005) Nature , vol.438 , pp. 578-580
    • Engelman, D.M.1
  • 14
    • 0004300111 scopus 로고
    • Handbook of Stochastic Methods
    • Springer
    • Gardiner C.W. Handbook of Stochastic Methods. Ser. Synergetics 1985, Springer.
    • (1985) Ser. Synergetics
    • Gardiner, C.W.1
  • 16
    • 2942675244 scopus 로고    scopus 로고
    • Lipid bilayer pressure profiles and mechanosensitive channel gating
    • Gullingsrud J., Schulten K. Lipid bilayer pressure profiles and mechanosensitive channel gating. Biophys. J. 2004, 86:3496-3509.
    • (2004) Biophys. J. , vol.86 , pp. 3496-3509
    • Gullingsrud, J.1    Schulten, K.2
  • 17
    • 84943997802 scopus 로고
    • Elastic properties of lipid bilayers: theory and possible experiments
    • Helfrich W. Elastic properties of lipid bilayers: theory and possible experiments. Z. Naturforsch. C 1973, 28:693-703.
    • (1973) Z. Naturforsch. C , vol.28 , pp. 693-703
    • Helfrich, W.1
  • 19
    • 0037145037 scopus 로고    scopus 로고
    • Integrins: Bidirectional, allosteric signaling machines
    • Hynes R. Integrins: Bidirectional, allosteric signaling machines. Cell 2002, 110:673-687.
    • (2002) Cell , vol.110 , pp. 673-687
    • Hynes, R.1
  • 20
    • 0029005840 scopus 로고
    • Revisiting the fluid mosaic model of membranes
    • Jacobson K., Sheets E.D., Simson R. Revisiting the fluid mosaic model of membranes. Science 1995, 268:1441-1442.
    • (1995) Science , vol.268 , pp. 1441-1442
    • Jacobson, K.1    Sheets, E.D.2    Simson, R.3
  • 22
    • 0030222116 scopus 로고    scopus 로고
    • Cell surface organization by the membrane skeleton
    • Kusumi A., Sako Y. Cell surface organization by the membrane skeleton. Curr. Opin. Cell Biol. 1996, 8:566-574.
    • (1996) Curr. Opin. Cell Biol. , vol.8 , pp. 566-574
    • Kusumi, A.1    Sako, Y.2
  • 24
    • 41349102515 scopus 로고    scopus 로고
    • Dynamics of viscoelastic membranes
    • Levine A.J., MacKintosh F.C. Dynamics of viscoelastic membranes. Phys. Rev. E 2002, 66:061606.
    • (2002) Phys. Rev. E , vol.66 , pp. 061606
    • Levine, A.J.1    MacKintosh, F.C.2
  • 25
    • 42749106177 scopus 로고    scopus 로고
    • Brownian dynamics in Fourier space: Membrane simulations over long length and time scales
    • Lin L.C.-L., Brown F.L.H. Brownian dynamics in Fourier space: Membrane simulations over long length and time scales. Phys. Rev. Lett. 2004, 93:256001.
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 256001
    • Lin, L.C.-L.1    Brown, F.L.H.2
  • 26
    • 27244439049 scopus 로고    scopus 로고
    • Dynamic simulations of membranes with cytoskeletal interactions
    • Lin L.C.-L., Brown F.L.H. Dynamic simulations of membranes with cytoskeletal interactions. Phys. Rev. E 2005, 72:011910.
    • (2005) Phys. Rev. E , vol.72 , pp. 011910
    • Lin, L.C.-L.1    Brown, F.L.H.2
  • 27
    • 64949173616 scopus 로고    scopus 로고
    • Hybrid elastic and discrete-particle approach to biomembrane dynamics with application to the mobility of curved integral membrane proteins
    • Naji A., Atzberger P.J., Brown F.L.H. Hybrid elastic and discrete-particle approach to biomembrane dynamics with application to the mobility of curved integral membrane proteins. Phys. Rev. Lett. 2009, 102:138102.
    • (2009) Phys. Rev. Lett. , vol.102 , pp. 138102
    • Naji, A.1    Atzberger, P.J.2    Brown, F.L.H.3
  • 28
    • 0001675053 scopus 로고
    • Inhomogeneous fluid membranes: Segregation, ordering, and effective rigidity
    • Netz R.R., Pincus P. Inhomogeneous fluid membranes: Segregation, ordering, and effective rigidity. Phys. Rev. E 1995, 52:4114.
    • (1995) Phys. Rev. E , vol.52 , pp. 4114
    • Netz, R.R.1    Pincus, P.2
  • 30
    • 0001065811 scopus 로고
    • Theory of protein-lipid and protein-protein interactions in bilayer membranes
    • Owicki J., McConnell H.M. Theory of protein-lipid and protein-protein interactions in bilayer membranes. Proc. Natl. Acad. Sci 1979, 76:4750-4754.
    • (1979) Proc. Natl. Acad. Sci , vol.76 , pp. 4750-4754
    • Owicki, J.1    McConnell, H.M.2
  • 31
    • 33751544551 scopus 로고    scopus 로고
    • The immersed boundary method
    • Peskin C.S. The immersed boundary method. Acta Numer. 2002, 11:479-517.
    • (2002) Acta Numer. , vol.11 , pp. 479-517
    • Peskin, C.S.1
  • 32
    • 66249083118 scopus 로고    scopus 로고
    • Emerging roles for lipids in shaping membrane-protein function
    • Phillips R., Ursell T., Wiggins P., Sens P. Emerging roles for lipids in shaping membrane-protein function. Nature 2009, 459:379-385.
    • (2009) Nature , vol.459 , pp. 379-385
    • Phillips, R.1    Ursell, T.2    Wiggins, P.3    Sens, P.4
  • 35
    • 33846382353 scopus 로고    scopus 로고
    • Hybrid simulations of lateral diffusion in fluctuating membranes
    • Reister-Gottfried E., Leitenberger S.M., Seifert U. Hybrid simulations of lateral diffusion in fluctuating membranes. Phys. Rev. E 2007, 75:011908.
    • (2007) Phys. Rev. E , vol.75 , pp. 011908
    • Reister-Gottfried, E.1    Leitenberger, S.M.2    Seifert, U.3
  • 36
    • 0003655416 scopus 로고
    • Simon & Schuster Company
    • Royden H. Real Analysis 1988, Simon & Schuster Company.
    • (1988) Real Analysis
    • Royden, H.1
  • 37
    • 0015514472 scopus 로고
    • The fluid mosaic model of the structure of cell membranes
    • Singer S.J., Nicolson G.L. The fluid mosaic model of the structure of cell membranes. Science 1972, 175:720-731.
    • (1972) Science , vol.175 , pp. 720-731
    • Singer, S.J.1    Nicolson, G.L.2
  • 38
    • 2542496903 scopus 로고    scopus 로고
    • Mechanosensitive channels: what can we learn from 'simple' model systems?
    • Sukharev S., Anishkin A. Mechanosensitive channels: what can we learn from 'simple' model systems?. Trends Neurosci. 2004, 27:345-351.
    • (2004) Trends Neurosci. , vol.27 , pp. 345-351
    • Sukharev, S.1    Anishkin, A.2
  • 39
    • 0033554903 scopus 로고    scopus 로고
    • On the classical statistical mechanics of non-Hamiltonian systems
    • Tuckerman M.E., Mundy C.J., Martyna G.J. On the classical statistical mechanics of non-Hamiltonian systems. Europhys. Lett. 1999, 45:149-155.
    • (1999) Europhys. Lett. , vol.45 , pp. 149-155
    • Tuckerman, M.E.1    Mundy, C.J.2    Martyna, G.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.