Brownian dynamics in Fourier space: Membrane simulations over long length and time scales

Physical Review Letters

Volumn 93, Issue 25, 2004, Pages

  Lin, Lawrence C L ^a   Brown, Frank L H ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPHYSICS; BROWNIAN DYNAMICS; CELLULAR BIOLOGY; FOURIER SPACE; HYDRODYNAMIC COUPLING;

ALGORITHMS; ATOMIC PHYSICS; BLOOD; BROWNIAN MOVEMENT; COMPUTER SIMULATION; DIFFUSION; EQUATIONS OF MOTION; HYDRODYNAMICS;

CELL MEMBRANES;

MEMBRANE PROTEIN;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; ERYTHROCYTE MEMBRANE; EVALUATION; HUMAN; LIPID BILAYER; MEMBRANE FLUIDITY; METABOLISM; MOTION; PHYSIOLOGY; PROTEIN TRANSPORT; STATISTICAL MODEL; TIME;

ANIMALS; COMPUTER SIMULATION; DIFFUSION; ERYTHROCYTE MEMBRANE; HUMANS; LIPID BILAYERS; MEMBRANE FLUIDITY; MEMBRANE PROTEINS; MODELS, CARDIOVASCULAR; MODELS, STATISTICAL; MOTION; PROTEIN TRANSPORT; TIME FACTORS;

EID: 42749106177     PISSN: 00319007     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevLett.93.256001     Document Type: Article

References (28)

1. R. Granek and J. Klafter, Europhys. Lett. 56, 15 (2001).
2. N. Gov, A. G. Zilman, and S. Safran, Phys. Rev. Lett. 90, 228101 (2003); N. Gov and S.A. Safran, Phys. Rev. E 69, 011101 (2004).
3. N. Gov, A. G. Zilman, and S. Safran, Phys. Rev. Lett. 90, 228101 (2003); N. Gov and S.A. Safran, Phys. Rev. E 69, 011101 (2004).
4. F. L. H. Brown, Biophys. J. 84, 842 (2003); L. C.-L. Lin and F. L. H. Brown, ibid. 86, 764 (2004).
5. F. L. H. Brown, Biophys. J. 84, 842 (2003); L. C.-L. Lin and F. L. H. Brown, ibid. 86, 764 (2004).
6. S. Y. Qi, J. T. Groves, and A. K. Chakraborty, Proc. Nat. Acad. Sci. U.S.A. 98, 6548 (2001).
7. N. Gouliaev and J. F. Nagle, Phys. Rev. E 58, 881 (1998); Phys. Rev. Lett. 81, 2610 (1998).
8. N. Gouliaev and J. F. Nagle, Phys. Rev. E 58, 881 (1998); Phys. Rev. Lett. 81, 2610 (1998).
9. T. R. Weikl and R. Lipowsky, Langmuir 16, 9338 (2000).
10. W. Helfrich, Z. Naturforsch. 28C, 693 (1973).
11. S. A. Safran, Statistical Thermodynamics of Surfaces, Interfaces and Membranes (Westview Press, Boulder, CO, 1994).
12. R. Goetz, G. Gompper, and R. Lipowsky, Phys, Rev. Lett. 82, 221 (1999); E. Lindahl and O. Edholm, Biophys. J. 79, 426 (2000); S. J. Marrink and A. E. Mark, J. Phys. Chem. B 105, 6122 (2001).
13. R. Goetz, G. Gompper, and R. Lipowsky, Phys, Rev. Lett. 82, 221 (1999); E. Lindahl and O. Edholm, Biophys. J. 79, 426 (2000); S. J. Marrink and A. E. Mark, J. Phys. Chem. B 105, 6122 (2001).
14. R. Goetz, G. Gompper, and R. Lipowsky, Phys, Rev. Lett. 82, 221 (1999); E. Lindahl and O. Edholm, Biophys. J. 79, 426 (2000); S. J. Marrink and A. E. Mark, J. Phys. Chem. B 105, 6122 (2001).
15. R. Granek, J. Phys. II (France) 7, 1761 (1997).
16. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Clarendon Press, Oxford, 1986).
17. D. L. Ermak and J. A. McCammon, J. Chem. Phys. 69, 1352 (1978).
18. In previous work [3] we adopted the notation "FSBD" for an algorithm restricted to harmonic potentials based on exact solution to Eq. (2). In the present work, FSBD refers to the general algorithm specified by Eq. (4).
19. M. P. Sheetz, Semin. Hematol. 20, 175 (1983).
20. M. Tomishige et al., J. Cell Biol. 142, 989 (1998).
21. M. J. Saxton, Int. J. Biochem. 22, 801 (1990).
22. D. H. Boal and S. K. Boey, Biophys. J. 69, 372 (1995).
23. F. L. H. Brown et al., Biophys. J. 78, 2257 (2000).
24. R. Podgornik and V. A. Parsegian, Langmuir 8, 557 (1992).
25. K. Gawrisch et al., Biophys. J. 61, 1213 (1992).
26. D. K. Fygenson, J. F. Marko, and A. Libchaber, Phys. Rev. Lett. 79, 4497 (1997).
27. J.-B. Manneville et al., Phys. Rev. Lett. 82, 4356 (1999).
28. R. Zwanzig and N. K. Ailawadi, Phys. Rev. 182, 280 (1969).