In Vivo Function and Evolution of the Eutherian-Specific Pluripotency Marker UTF1

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Nishimoto, Masazumi ^a   Katano, Miyuki ^a   Yamagishi, Toshiyuki ^b   Hishida, Tomoaki ^a   Kamon, Masayoshi ^a   Suzuki, Ayumu ^a   Hirasaki, Masataka ^a   Nabeshima, Yoko ^c   Nabeshima, Yo ichi ^c   Katsura, Yukako ^d   Satta, Yoko ^d   Deakin, Janine E ^e   Graves, Jennifer A Marshall ^e,f   Kuroki, Yoko ^g   Ono, Ryuichi ^h   Ishino, Fumitoshi ^h   Ema, Masatsugu ⁱ   Takahashi, Satoru ^i,j   Kato, Hidemasa ^a   Okuda, Akihiko ^a,j  

^a SAITAMA MEDICAL UNIVERSITY   (Japan)

^b OSAKA CITY UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^c FOUNDATION FOR BIOMEDICAL RESEARCH AND INNOVATION   (Japan)

^d GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

^e AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^f LA TROBE UNIVERSITY   (Australia)

^g RIKEN Center for Integrative Medical Sciences   (Japan)

^h TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

ⁱ UNIVERSITY OF TSUKUBA   (Japan)

^j JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EMBRYO; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DEVELOPMENT; ECTODERM; EMBRYO; EMBRYO DEVELOPMENT; EMBRYONIC STEM CELL; GENE; GENE EXPRESSION; GENE FUNCTION; GENE LOSS; GENE SEQUENCE; GENE STRUCTURE; HOMOZYGOSITY; IN VIVO STUDY; MOLECULAR EVOLUTION; MOUSE MUTANT; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLACENTA; PLACENTA INSUFFICIENCY; PLACENTAL MAMMALS; PLURIPOTENT STEM CELL; SEQUENCE HOMOLOGY; UTF1 GENE;

AMINO ACID SEQUENCE; ANIMALS; CHROMOSOMAL PROTEINS, NON-HISTONE; EMBRYONIC DEVELOPMENT; EMBRYONIC STEM CELLS; EVOLUTION, MOLECULAR; FEMALE; GENE KNOCKOUT TECHNIQUES; GENE TARGETING; GENOTYPE; MICE; MOLECULAR SEQUENCE DATA; MUTATION; PHENOTYPE; PHYLOGENY; PLACENTA; PREGNANCY; SEQUENCE ALIGNMENT; TRANS-ACTIVATORS;

EUTHERIA; MUS;

EID: 84879991010     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068119     Document Type: Article

References (49)

1. Fleming TP, (1987) A quantitative analysis of cell allocation to trophectoderm and inner cell mass in the mouse blastocyst. Dev Biol 119: 520-531.
2. Rossant J, Cross JC, (2001) Placental Development: Lessons from mouse mutants. Nat Rev Genetics 2: 538-548.
3. Carter AM, (2007) Animal models of human placentation-a review. Placenta 28: S41-S47.
4. Rossant J, Tam PPL, (2009) Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse. Development 136: 701-713.
5. Evans MJ, Kaufman M, (1981) Establishment in culture of pluripotent cells from mouse embryos. Nature 292: 154-156.
6. Martin GR, (1981) Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc Natl Acad Sci USA 78: 7634-7638.
7. Evans M, (2011) Discovering pluripotency: 30 years of mouse embryonic stem cells. Nat Rev Mol Cell Biol 12: 680-686.
8. Takahashi K, Yamanaka S, (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126: 663-676.
9. Avilion AA, Nicolis SK, Pevny LH, Perez L, Vivian N, et al. (2003) Multipotent cell lineages in early mouse development depend on SOX2 function. Genes Dev 20: 126-140.
10. Taranova OV, Magness ST, Fagan BM, Wu Y, Surzenko N, et al. (2006) SOX2 is a dose-dependent regulator of retinal neural progenitor competence. Genes Dev. 20: 1187-1202.
11. Miyagi S, Masui S, Niwa H, Saito T, Shimazaki T, et al. (2008) Consequence of the loss of Sox2 in the developing brain of the mouse. FEBS Lett 582: 2811-2815.
12. Favaro R, Valotta M, Ferri ALM, Latorre E, Mariani J, et al. (2009) Hippocampal development and neural stem cell maintenance require Sox2-dependent regulation of Shh. Nat. Neurosci. 12: 1248-1256.
13. Okuda A, Fukushima A, Nishimoto M, Orimo A, Yamagishi T, et al. (1998) UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells. EMBO J. 17: 2019-2032.
14. Jia J, Zheng X, Hu G, Cui K, Zhang J, et al. (2012) Regulation of pluripotency and self-renewal of ESCs through epigenetic-threshold modulation and mRNA pruning. Cell 151: 576-589.
15. Niwa H, Miyazaki J, Smith AG, (2000) Quantitative expression of Oct-3/4 defines differentiation or self-renewal of ES cells. Nat Genet 24: 372-376.
16. Nishimoto M, Miyagi S, Yamagishi T, Sakaguchi T, Niwa H, et al. (2005) Oct-3/4 maintains the proliferative embryonic stem cell state via specific binding to a variant octamer sequence in the regulatory region of the UTF1 locus. Mol Cell Biol 25: 5084-5094.
17. Bryja V, Bonilia S, Cajanek L, Parish CL, Schwartz CM, et al. (2006) An efficient method for the derivation of mouse embryonic stem cells. Stem Cells 24: 844-849.
18. Deakin JE, Koina E, Waters PD, Doherty R, Patel VS, et al. (2008) Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals. Chromosome Res 16: 1159-1175.
19. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
20. Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
21. Yang Z-Z, Tschopp O, Hemmings-Mieszczak M, Feng J, Brodbeck D, et al. (2003) Protein Kinase Bα/Akt1 Regulates Placental Development and Fetal Growth. J Biol Chem 278: 32124-32131.
22. Mari G, Hanif F, (2007) Intrauterine growth restriction: how to manage and when to deliver. Clin Obstet Gynecol 50: 497-509.
23. Pennisi DJ, Kinna G, Chiu HS, Simmons DG, Wilkinson L, et al. (2012) Crim1 has an essential role in glycogen trophoblast cell and sinusoidal-trophoblast giant cell development. Placenta 33: 175-182.
24. Mototani Y, Miyoshi I, Okamura T, Moriya T, Meng Y, et al. (2006) Phenotypic and genetic characterization of the Atp7aMo-Tohm mottled mouse: a new murine model of Menkes disease. Genomics 87: 191-199.
25. Kusakabe M, Hasegawa K, Hamada M, Nakamura M, et al. (2011) c-Maf plays a crucial role for the definitive erythropoiesis that accompanies erythroblastic island formation in the fetal liver. Blood 118: 1374-1385.
26. van den Boom V, Kooistra SM, Boesjes M, Geverts B, Houtsmuller AB, et al. (2007) UTF1 is a chromatin-associated protein involved in ES cell differentiation. J Cell Biol 178: 913-924.
27. Chambers I, Colby D, Robertson M, Nicholis J, Lee S, et al. (2003) Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113: 643-655.
28. Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, et al. (2003) The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113: 631-642.
29. Chambers I, Silva J, Colby D, Nicholis J, Nijimeijer B, et al. (2007) Nanog safeguards pluripotency and mediates germline development. Nature 450: 1230-1234.
30. Silva J, Nichols J, Theunissen TW, Guo G, van Oosten AL, et al. (2009) Nanog as the gateway to the pluripotent ground state. Cell 138: 722-737.
31. Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, et al. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131: 861-872.
32. Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, et al. (2007) Induced pluripotent stem cell lines derived from human somatic cells. Science 318: 1917-1920.
33. Fukushima A, Okuda A, Nishimoto M, Seki N, Hori T, et al. (1998) Characterization of functional domain of an embryonic stem cell coactivator UTF1 which are conserved and essential for potentiation of ATF2 activity. J Biol. Chem. 273: 25840-25849.
34. Tan SM, Wang ST, Hentze H, Dröge P, (2007) A UTF1-based selection system for stable homogeneously pluripotent human embryonic stem cell cultures. Nucleic Acids Res 35: 118e.
35. Pfannkuche K, Fatima A, Gupt MK, Dieterich R, Hescheler J, (2010) Initial colony morphology-based selection for iPS cells derived from adult fibroblasts is substantially improved by temporary UTF1-based selection. PLoS One 5: e9580.
36. Buganim Y, Faddah DA, Cheng AW, Itskovich E, Markoulaki S, et al. (2012) Single cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase. Cell 150: 1209-1222.
37. Pain B, Clark ME, Shen M, Nakazawa H, Sakurai M, et al. (1996) Long term in vitro culture and characterization of avian embryonic stem cells with multiple morphogenetic potentialities. Development 122: 2339-2348.
38. Petitte JN, Liu G, Yang Z, (2004) Avian pluripotent stem cells. Mech. Dev. 121: 1159-1168.
39. Kaneko-Ishino T, Ishino F, (2010) Retrotransposon silencing by DNA methylation contributed to the evolution of placentation and genomic imprinting in mammals. Develop Growth Differ 52: 533-543.
40. Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, et al. (2011) Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol 12: R81.
41. Lipman DJ, Souvorov A, Koonin EV, Panchenko AR, Tatusova TA, (2002) The relationship of protein conservation and sequence length. BMC Evol Biol 2: 20.
42. Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ, (2009) The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc Natl Acad Sci USA 106: 7273-7280.
43. Cai JJ, Petrov DA, (2010) Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genomic Biol Evol 2: 393-409.
44. Ekman D, Elofsson A, (2010) Identifying and quantifying orphan protein sequences in fungi. J Mol Biol 396: 396-405.
45. Tautz D, Domazet-Loso T, (2011) The evolutionary origin of orphan genes Nature Rev Genet. 12: 692-702.
46. Ono R, Nakamura K, Inoue K, Naruse M, Usami T, et al. (2006) Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat Genet 38: 101-106.
47. Edwards CA, Mungall AJ, Mathews AL, Ryder E, Gray DJ, et al. (2008) The evolution of the DLK1-DIO3 imprinted domain in mammals. PLoS Biol 6: e135.
48. Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yidirim MA, et al. (2012) Proto-genes and de novo gene birth. Nature 487: 370-374.
49. Rapkins RW, Hore T, Smithwick M, Ager E, Pask AJ, et al. (2006) Recent assembly of an imprinted domain from non-imprinted components. PLoS Genet 2: e182.