-
1
-
-
26844534146
-
MraZ from Escherichia coli: cloning, purification, crystallization and preliminary X-ray analysis
-
Adams, M.A., Udell, C.M., Pal, G.P., and Jia, Z. (2005) MraZ from Escherichia coli: cloning, purification, crystallization and preliminary X-ray analysis. Acta Crystallograph Sect F Struct Biol Cryst Commun 61: 378-380.
-
(2005)
Acta Crystallograph Sect F Struct Biol Cryst Commun
, vol.61
, pp. 378-380
-
-
Adams, M.A.1
Udell, C.M.2
Pal, G.P.3
Jia, Z.4
-
2
-
-
3342950406
-
Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR
-
Anthony, J.R., Newman, J.D., and Donohue, T.J. (2004) Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR. J Mol Biol 341: 345-360.
-
(2004)
J Mol Biol
, vol.341
, pp. 345-360
-
-
Anthony, J.R.1
Newman, J.D.2
Donohue, T.J.3
-
3
-
-
18144373854
-
A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis
-
Anthony, J.R., Warczak, K.L., and Donohue, T.J. (2005) A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis. Proc Natl Acad Sci USA 102: 6502-6507.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6502-6507
-
-
Anthony, J.R.1
Warczak, K.L.2
Donohue, T.J.3
-
4
-
-
77949383248
-
Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq
-
Barra-Bily, L., Fontenelle, C., Jan, G., Flechard, M., Trautwetter, A., Pandey, S.P., etal. (2010a) Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq. J Bacteriol 192: 1719-1729.
-
(2010)
J Bacteriol
, vol.192
, pp. 1719-1729
-
-
Barra-Bily, L.1
Fontenelle, C.2
Jan, G.3
Flechard, M.4
Trautwetter, A.5
Pandey, S.P.6
-
5
-
-
77949373122
-
The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa
-
Barra-Bily, L., Pandey, S.P., Trautwetter, A., Blanco, C., and Walker, G.C. (2010b) The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa. J Bacteriol 192: 1710-1718.
-
(2010)
J Bacteriol
, vol.192
, pp. 1710-1718
-
-
Barra-Bily, L.1
Pandey, S.P.2
Trautwetter, A.3
Blanco, C.4
Walker, G.C.5
-
6
-
-
77950555699
-
The influence of Hfq and ribonucleases on the stability of the small non-coding RNA OxyS and its target rpoS in E. coli is growth phase dependent
-
Basineni, S.R., Madhugiri, R., Kolmsee, T., Hengge, R., and Klug, G. (2009) The influence of Hfq and ribonucleases on the stability of the small non-coding RNA OxyS and its target rpoS in E. coli is growth phase dependent. RNA Biol 6: 584-594.
-
(2009)
RNA Biol
, vol.6
, pp. 584-594
-
-
Basineni, S.R.1
Madhugiri, R.2
Kolmsee, T.3
Hengge, R.4
Klug, G.5
-
7
-
-
72049118448
-
Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides
-
Berghoff, B.A., Glaeser, J., Sharma, C.M., Vogel, J., and Klug, G. (2009) Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol Microbiol 74: 1497-1512.
-
(2009)
Mol Microbiol
, vol.74
, pp. 1497-1512
-
-
Berghoff, B.A.1
Glaeser, J.2
Sharma, C.M.3
Vogel, J.4
Klug, G.5
-
8
-
-
34648834050
-
The state of the art in the analysis of two-dimensional gel electrophoresis images
-
Berth, M., Moser, F.M., Kolbe, M., and Bernhardt, J. (2007) The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl Microbiol Biotechnol 76: 1223-1243.
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 1223-1243
-
-
Berth, M.1
Moser, F.M.2
Kolbe, M.3
Bernhardt, J.4
-
9
-
-
0036371637
-
A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides
-
Braatsch, S., Gomelsky, M., Kuphal, S., and Klug, G. (2002) A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides. Mol Microbiol 45: 827-836.
-
(2002)
Mol Microbiol
, vol.45
, pp. 827-836
-
-
Braatsch, S.1
Gomelsky, M.2
Kuphal, S.3
Klug, G.4
-
10
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
11
-
-
0029889596
-
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene
-
Brown, L., and Elliott, T. (1996) Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene. J Bacteriol 178: 3763-3770.
-
(1996)
J Bacteriol
, vol.178
, pp. 3763-3770
-
-
Brown, L.1
Elliott, T.2
-
12
-
-
75249100904
-
The role of Hfq in bacterial pathogens
-
Chao, Y., and Vogel, J. (2010) The role of Hfq in bacterial pathogens. Curr Opin Microbiol 13: 24-33.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 24-33
-
-
Chao, Y.1
Vogel, J.2
-
13
-
-
0034651621
-
DNA sequence analysis of the photosynthesis region of Rhodobacter sphaeroides 2.4.1
-
Choudhary, M., and Kaplan, S. (2000) DNA sequence analysis of the photosynthesis region of Rhodobacter sphaeroides 2.4.1. Nucleic Acids Res 28: 862-867.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 862-867
-
-
Choudhary, M.1
Kaplan, S.2
-
14
-
-
2442645227
-
The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence
-
Christiansen, J.K., Larsen, M.H., Ingmer, H., Sogaard-Andersen, L., and Kallipolitis, B.H. (2004) The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence. J Bacteriol 186: 3355-3362.
-
(2004)
J Bacteriol
, vol.186
, pp. 3355-3362
-
-
Christiansen, J.K.1
Larsen, M.H.2
Ingmer, H.3
Sogaard-Andersen, L.4
Kallipolitis, B.H.5
-
15
-
-
33745616103
-
Identification of small Hfq-binding RNAs in Listeria monocytogenes
-
Christiansen, J.K., Nielsen, J.S., Ebersbach, T., Valentin-Hansen, P., Sogaard-Andersen, L., and Kallipolitis, B.H. (2006) Identification of small Hfq-binding RNAs in Listeria monocytogenes. RNA 12: 1383-1396.
-
(2006)
RNA
, vol.12
, pp. 1383-1396
-
-
Christiansen, J.K.1
Nielsen, J.S.2
Ebersbach, T.3
Valentin-Hansen, P.4
Sogaard-Andersen, L.5
Kallipolitis, B.H.6
-
16
-
-
0037564169
-
Singlet oxygen-mediated damage to proteins and its consequences
-
Davies, M.J. (2003) Singlet oxygen-mediated damage to proteins and its consequences. Biochem Biophys Res Commun 305: 761-770.
-
(2003)
Biochem Biophys Res Commun
, vol.305
, pp. 761-770
-
-
Davies, M.J.1
-
17
-
-
3042688696
-
Reactive species formed on proteins exposed to singlet oxygen
-
Davies, M.J. (2004) Reactive species formed on proteins exposed to singlet oxygen. Photochem Photobiol Sci 3: 17-25.
-
(2004)
Photochem Photobiol Sci
, vol.3
, pp. 17-25
-
-
Davies, M.J.1
-
18
-
-
33947390925
-
Disruption of sitA compromises Sinorhizobium meliloti for manganese uptake required for protection against oxidative stress
-
Davies, B.W., and Walker, G.C. (2007) Disruption of sitA compromises Sinorhizobium meliloti for manganese uptake required for protection against oxidative stress. J Bacteriol 189: 2101-2109.
-
(2007)
J Bacteriol
, vol.189
, pp. 2101-2109
-
-
Davies, B.W.1
Walker, G.C.2
-
19
-
-
67349095027
-
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
-
Desnoyers, G., Morissette, A., Prevost, K., and Masse, E. (2009) Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J 28: 1551-1561.
-
(2009)
EMBO J
, vol.28
, pp. 1551-1561
-
-
Desnoyers, G.1
Morissette, A.2
Prevost, K.3
Masse, E.4
-
20
-
-
55549101288
-
The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803
-
Dienst, D., Duhring, U., Mollenkopf, H.J., Vogel, J., Golecki, J., Hess, W.R., etal. (2008) The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803. Microbiology 154: 3134-3143.
-
(2008)
Microbiology
, vol.154
, pp. 3134-3143
-
-
Dienst, D.1
Duhring, U.2
Mollenkopf, H.J.3
Vogel, J.4
Golecki, J.5
Hess, W.R.6
-
22
-
-
52949112607
-
Organization and evolution of the biological response to singlet oxygen stress
-
Dufour, Y.S., Landick, R., and Donohue, T.J. (2008) Organization and evolution of the biological response to singlet oxygen stress. J Mol Biol 383: 713-730.
-
(2008)
J Mol Biol
, vol.383
, pp. 713-730
-
-
Dufour, Y.S.1
Landick, R.2
Donohue, T.J.3
-
23
-
-
2942558361
-
RegB/RegA, a highly conserved redox-responding global two-component regulatory system
-
Elsen, S., Swem, L.R., Swem, D.L., and Bauer, C.E. (2004) RegB/RegA, a highly conserved redox-responding global two-component regulatory system. Microbiol Mol Biol Rev 68: 263-279.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 263-279
-
-
Elsen, S.1
Swem, L.R.2
Swem, D.L.3
Bauer, C.E.4
-
24
-
-
21244441564
-
PpsR: a multifaceted regulator of photosynthesis gene expression in purple bacteria
-
Elsen, S., Jaubert, M., Pignol, D., and Giraud, E. (2005) PpsR: a multifaceted regulator of photosynthesis gene expression in purple bacteria. Mol Microbiol 57: 17-26.
-
(2005)
Mol Microbiol
, vol.57
, pp. 17-26
-
-
Elsen, S.1
Jaubert, M.2
Pignol, D.3
Giraud, E.4
-
25
-
-
0027976503
-
prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides
-
Eraso, J.M., and Kaplan, S. (1994) prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides. J Bacteriol 176: 32-43.
-
(1994)
J Bacteriol
, vol.176
, pp. 32-43
-
-
Eraso, J.M.1
Kaplan, S.2
-
26
-
-
78649885541
-
RNAs actively cycle on the Sm-like protein Hfq
-
Fender, A., Elf, J., Hampel, K., Zimmermann, B., and Wagner, E.G. (2010) RNAs actively cycle on the Sm-like protein Hfq. Genes Dev 24: 2621-2626.
-
(2010)
Genes Dev
, vol.24
, pp. 2621-2626
-
-
Fender, A.1
Elf, J.2
Hampel, K.3
Zimmermann, B.4
Wagner, E.G.5
-
27
-
-
0014409656
-
Factor fraction required for synthesis of bacteriophage Qbeta-RNA
-
Franze, M.T., Eoyang, L., and August, J.T. (1968) Factor fraction required for synthesis of bacteriophage Qbeta-RNA. Nature 219: 588-590.
-
(1968)
Nature
, vol.219
, pp. 588-590
-
-
Franze, M.T.1
Eoyang, L.2
August, J.T.3
-
28
-
-
71549126189
-
Activation of gene expression by small RNA
-
Fröhlich, K.S., and Vogel, J. (2009) Activation of gene expression by small RNA. Curr Opin Microbiol 12: 674-682.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 674-682
-
-
Fröhlich, K.S.1
Vogel, J.2
-
29
-
-
21344459291
-
Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes
-
Glaeser, J., and Klug, G. (2005) Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes. Microbiology 151: 1927-1938.
-
(2005)
Microbiology
, vol.151
, pp. 1927-1938
-
-
Glaeser, J.1
Klug, G.2
-
30
-
-
34547199027
-
Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter
-
Glaeser, J., Zobawa, M., Lottspeich, F., and Klug, G. (2007) Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter. J Proteome Res 6: 2460-2471.
-
(2007)
J Proteome Res
, vol.6
, pp. 2460-2471
-
-
Glaeser, J.1
Zobawa, M.2
Lottspeich, F.3
Klug, G.4
-
31
-
-
0031026315
-
Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1
-
Gomelsky, M., and Kaplan, S. (1997) Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1. J Bacteriol 179: 128-134.
-
(1997)
J Bacteriol
, vol.179
, pp. 128-134
-
-
Gomelsky, M.1
Kaplan, S.2
-
32
-
-
84863924309
-
Bacterial small RNA regulators: versatile roles and rapidly evolving variations
-
doi:10.1101/cshperspect.a003798
-
Gottesman, S., and Storz, G. (2010) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol. doi:10.1101/cshperspect.a003798
-
(2010)
Cold Spring Harb Perspect Biol
-
-
Gottesman, S.1
Storz, G.2
-
33
-
-
33947361601
-
Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
-
Guisbert, E., Rhodius, V.A., Ahuja, N., Witkin, E., and Gross, C.A. (2007) Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli. J Bacteriol 189: 1963-1973.
-
(2007)
J Bacteriol
, vol.189
, pp. 1963-1973
-
-
Guisbert, E.1
Rhodius, V.A.2
Ahuja, N.3
Witkin, E.4
Gross, C.A.5
-
34
-
-
4344656345
-
A eukaryotic BLUF domain mediates light-dependent gene expression in the purple bacterium Rhodobacter sphaeroides 2.4.1
-
Han, Y., Braatsch, S., Osterloh, L., and Klug, G. (2004) A eukaryotic BLUF domain mediates light-dependent gene expression in the purple bacterium Rhodobacter sphaeroides 2.4.1. Proc Natl Acad Sci USA 101: 12306-12311.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12306-12311
-
-
Han, Y.1
Braatsch, S.2
Osterloh, L.3
Klug, G.4
-
35
-
-
34248328266
-
A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides
-
Han, Y., Meyer, M.H., Keusgen, M., and Klug, G. (2007) A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides. Mol Microbiol 64: 1090-1104.
-
(2007)
Mol Microbiol
, vol.64
, pp. 1090-1104
-
-
Han, Y.1
Meyer, M.H.2
Keusgen, M.3
Klug, G.4
-
36
-
-
27444435780
-
Light-dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two-component system and the photoreceptor AppA
-
Happ, H.N., Braatsch, S., Broschek, V., Osterloh, L., and Klug, G. (2005) Light-dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two-component system and the photoreceptor AppA. Mol Microbiol 58: 903-914.
-
(2005)
Mol Microbiol
, vol.58
, pp. 903-914
-
-
Happ, H.N.1
Braatsch, S.2
Broschek, V.3
Osterloh, L.4
Klug, G.5
-
37
-
-
34250697880
-
The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a sigma(E)-dependent manner
-
Hendrischk, A.K., Braatsch, S., Glaeser, J., and Klug, G. (2007) The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a sigma(E)-dependent manner. Microbiology 153: 1842-1851.
-
(2007)
Microbiology
, vol.153
, pp. 1842-1851
-
-
Hendrischk, A.K.1
Braatsch, S.2
Glaeser, J.3
Klug, G.4
-
38
-
-
0025727991
-
Expression of regulatory nif genes in Rhodobacter capsulatus
-
Hübner, P., Willison, J.C., Vignais, P.M., and Bickle, T.A. (1991) Expression of regulatory nif genes in Rhodobacter capsulatus. J Bacteriol 173: 2993-2999.
-
(1991)
J Bacteriol
, vol.173
, pp. 2993-2999
-
-
Hübner, P.1
Willison, J.C.2
Vignais, P.M.3
Bickle, T.A.4
-
39
-
-
33645065589
-
Iron-sulphur clusters and the problem with oxygen
-
Imlay, J.A. (2006) Iron-sulphur clusters and the problem with oxygen. Mol Microbiol 59: 1073-1082.
-
(2006)
Mol Microbiol
, vol.59
, pp. 1073-1082
-
-
Imlay, J.A.1
-
40
-
-
0022599284
-
Evidence for a coordinate transcriptional control of alpha-toxin and protein a synthesis in Staphylococcus aureus
-
Janzon, L., Lofdahl, S., and Arvidson, S. (1986) Evidence for a coordinate transcriptional control of alpha-toxin and protein a synthesis in Staphylococcus aureus. FEMS Microbiol Lett 33: 193-198.
-
(1986)
FEMS Microbiol Lett
, vol.33
, pp. 193-198
-
-
Janzon, L.1
Lofdahl, S.2
Arvidson, S.3
-
41
-
-
0023715368
-
Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria
-
Keen, N.T., Tamaki, S., Kobayashi, D., and Trollinger, D. (1988) Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene 70: 191-197.
-
(1988)
Gene
, vol.70
, pp. 191-197
-
-
Keen, N.T.1
Tamaki, S.2
Kobayashi, D.3
Trollinger, D.4
-
42
-
-
0028793123
-
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
-
Kovach, M.E., Elzer, P.H., Hill, D.S., Robertson, G.T., Farris, M.A., Roop, R.M., 2nd, etal. (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166: 175-176.
-
(1995)
Gene
, vol.166
, pp. 175-176
-
-
Kovach, M.E.1
Elzer, P.H.2
Hill, D.S.3
Robertson, G.T.4
Farris, M.A.5
Roop 2nd, R.M.6
-
43
-
-
72049095718
-
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
-
Link, T.M., Valentin-Hansen, P., and Brennan, R.G. (2009) Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci USA 106: 19292-19297.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19292-19297
-
-
Link, T.M.1
Valentin-Hansen, P.2
Brennan, R.G.3
-
44
-
-
77954378224
-
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
-
Lorenz, C., Gesell, T., Zimmermann, B., Schoeberl, U., Bilusic, I., Rajkowitsch, L., etal. (2010) Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts. Nucleic Acids Res 38: 3794-3808.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3794-3808
-
-
Lorenz, C.1
Gesell, T.2
Zimmermann, B.3
Schoeberl, U.4
Bilusic, I.5
Rajkowitsch, L.6
-
45
-
-
77958605759
-
Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi
-
Lybecker, M.C., Abel, C.A., Feig, A.L., and Samuels, D.S. (2010) Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi. Mol Microbiol 78: 622-635.
-
(2010)
Mol Microbiol
, vol.78
, pp. 622-635
-
-
Lybecker, M.C.1
Abel, C.A.2
Feig, A.L.3
Samuels, D.S.4
-
46
-
-
0002782867
-
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction
-
Møller, T., Franch, T., Hojrup, P., Keene, D.R., Bachinger, H.P., Brennan, R.G., etal. (2002) Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell 9: 23-30.
-
(2002)
Mol Cell
, vol.9
, pp. 23-30
-
-
Møller, T.1
Franch, T.2
Hojrup, P.3
Keene, D.R.4
Bachinger, H.P.5
Brennan, R.G.6
-
47
-
-
14644440779
-
Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development
-
Moskvin, O.V., Gomelsky, L., and Gomelsky, M. (2005) Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development. J Bacteriol 187: 2148-2156.
-
(2005)
J Bacteriol
, vol.187
, pp. 2148-2156
-
-
Moskvin, O.V.1
Gomelsky, L.2
Gomelsky, M.3
-
48
-
-
0029897937
-
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli
-
Muffler, A., Fischer, D., and Hengge-Aronis, R. (1996) The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli. Genes Dev 10: 1143-1151.
-
(1996)
Genes Dev
, vol.10
, pp. 1143-1151
-
-
Muffler, A.1
Fischer, D.2
Hengge-Aronis, R.3
-
49
-
-
0035955551
-
The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor
-
Newman, J.D., Anthony, J.R., and Donohue, T.J. (2001) The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor. J Mol Biol 313: 485-499.
-
(2001)
J Mol Biol
, vol.313
, pp. 485-499
-
-
Newman, J.D.1
Anthony, J.R.2
Donohue, T.J.3
-
50
-
-
0003057316
-
The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria
-
van Niel, C.B. (1944) The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria. Bacteriol Rev 8: 1-118.
-
(1944)
Bacteriol Rev
, vol.8
, pp. 1-118
-
-
van Niel, C.B.1
-
51
-
-
77950356238
-
Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
-
Nielsen, J.S., Lei, L.K., Ebersbach, T., Olsen, A.S., Klitgaard, J.K., Valentin-Hansen, P., etal. (2010) Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes. Nucleic Acids Res 38: 907-919.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 907-919
-
-
Nielsen, J.S.1
Lei, L.K.2
Ebersbach, T.3
Olsen, A.S.4
Klitgaard, J.K.5
Valentin-Hansen, P.6
-
52
-
-
21444437209
-
Structure of Pseudomonas aeruginosa Hfq protein
-
Nikulin, A., Stolboushkina, E., Perederina, A., Vassilieva, I., Blaesi, U., Moll, I., etal. (2005) Structure of Pseudomonas aeruginosa Hfq protein. Acta Crystallogr D Biol Crystallogr 61: 141-146.
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, pp. 141-146
-
-
Nikulin, A.1
Stolboushkina, E.2
Perederina, A.3
Vassilieva, I.4
Blaesi, U.5
Moll, I.6
-
53
-
-
58149503635
-
RpoH(II) activates oxidative-stress defense systems and is controlled by RpoE in the singlet oxygen-dependent response in Rhodobacter sphaeroides
-
Nuss, A.M., Glaeser, J., and Klug, G. (2009) RpoH(II) activates oxidative-stress defense systems and is controlled by RpoE in the singlet oxygen-dependent response in Rhodobacter sphaeroides. J Bacteriol 191: 220-230.
-
(2009)
J Bacteriol
, vol.191
, pp. 220-230
-
-
Nuss, A.M.1
Glaeser, J.2
Klug, G.3
-
54
-
-
77952022168
-
Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides
-
Nuss, A.M., Glaeser, J., Berghoff, B.A., and Klug, G. (2010) Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides. J Bacteriol 192: 2613-2623.
-
(2010)
J Bacteriol
, vol.192
, pp. 2613-2623
-
-
Nuss, A.M.1
Glaeser, J.2
Berghoff, B.A.3
Klug, G.4
-
55
-
-
2442567822
-
A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli
-
Outten, F.W., Djaman, O., and Storz, G. (2004) A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli. Mol Microbiol 52: 861-872.
-
(2004)
Mol Microbiol
, vol.52
, pp. 861-872
-
-
Outten, F.W.1
Djaman, O.2
Storz, G.3
-
56
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
Papenfort, K., and Vogel, J. (2009) Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol 160: 278-287.
-
(2009)
Res Microbiol
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
57
-
-
77958028354
-
Regulatory RNA in bacterial pathogens
-
Papenfort, K., and Vogel, J. (2010) Regulatory RNA in bacterial pathogens. Cell Host Microbe 8: 116-127.
-
(2010)
Cell Host Microbe
, vol.8
, pp. 116-127
-
-
Papenfort, K.1
Vogel, J.2
-
58
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
Papenfort, K., Said, N., Welsink, T., Lucchini, S., Hinton, J.C., and Vogel, J. (2009) Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 74: 139-158.
-
(2009)
Mol Microbiol
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
59
-
-
3042731015
-
Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes
-
Pappas, C.T., Sram, J., Moskvin, O.V., Ivanov, P.S., Mackenzie, R.C., Choudhary, M., etal. (2004) Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes. J Bacteriol 186: 4748-4758.
-
(2004)
J Bacteriol
, vol.186
, pp. 4748-4758
-
-
Pappas, C.T.1
Sram, J.2
Moskvin, O.V.3
Ivanov, P.S.4
Mackenzie, R.C.5
Choudhary, M.6
-
60
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
61
-
-
36148969305
-
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
-
Pfeiffer, V., Sittka, A., Tomer, R., Tedin, K., Brinkmann, V., and Vogel, J. (2007) A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 66: 1174-1191.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1174-1191
-
-
Pfeiffer, V.1
Sittka, A.2
Tomer, R.3
Tedin, K.4
Brinkmann, V.5
Vogel, J.6
-
62
-
-
40349096762
-
The role of the small regulatory RNA GcvB in GcvB/mRNA posttranscriptional regulation of oppA and dppA in Escherichia coli
-
Pulvermacher, S.C., Stauffer, L.T., and Stauffer, G.V. (2008) The role of the small regulatory RNA GcvB in GcvB/mRNA posttranscriptional regulation of oppA and dppA in Escherichia coli. FEMS Microbiol Lett 281: 42-50.
-
(2008)
FEMS Microbiol Lett
, vol.281
, pp. 42-50
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
63
-
-
61449128339
-
Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs
-
Pulvermacher, S.C., Stauffer, L.T., and Stauffer, G.V. (2009) Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs. Microbiology 155: 115-123.
-
(2009)
Microbiology
, vol.155
, pp. 115-123
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
64
-
-
0242380623
-
Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli
-
Sauter, C., Basquin, J., and Suck, D. (2003) Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli. Nucleic Acids Res 31: 4091-4098.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4091-4098
-
-
Sauter, C.1
Basquin, J.2
Suck, D.3
-
65
-
-
77956230835
-
The small RNA Aar in Acinetobacter baylyi: a putative regulator of amino acid metabolism
-
Schilling, D., Findeiss, S., Richter, A.S., Taylor, J.A., and Gerischer, U. (2010) The small RNA Aar in Acinetobacter baylyi: a putative regulator of amino acid metabolism. Arch Microbiol 192: 691-702.
-
(2010)
Arch Microbiol
, vol.192
, pp. 691-702
-
-
Schilling, D.1
Findeiss, S.2
Richter, A.S.3
Taylor, J.A.4
Gerischer, U.5
-
66
-
-
0036645689
-
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein
-
Schumacher, M.A., Pearson, R.F., Moller, T., Valentin-Hansen, P., and Brennan, R.G. (2002) Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J 21: 3546-3556.
-
(2002)
EMBO J
, vol.21
, pp. 3546-3556
-
-
Schumacher, M.A.1
Pearson, R.F.2
Moller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
67
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev 21: 2804-2817.
-
(2007)
Genes Dev
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
68
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma, C.M., Hoffmann, S., Darfeuille, F., Reignier, J., Findeiss, S., Sittka, A., etal. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
-
69
-
-
0022559895
-
Plasmid vectors for the genetic analysis and manipulation of rhizobia and other gram-negative bacteria
-
Simon, R., O'Connell, M., Labes, M., and Puhler, A. (1986) Plasmid vectors for the genetic analysis and manipulation of rhizobia and other gram-negative bacteria. Methods Enzymol 118: 640-659.
-
(1986)
Methods Enzymol
, vol.118
, pp. 640-659
-
-
Simon, R.1
O'Connell, M.2
Labes, M.3
Puhler, A.4
-
70
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
Sittka, A., Pfeiffer, V., Tedin, K., and Vogel, J. (2007) The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol 63: 193-217.
-
(2007)
Mol Microbiol
, vol.63
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
71
-
-
50849105413
-
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
-
Sittka, A., Lucchini, S., Papenfort, K., Sharma, C.M., Rolle, K., Binnewies, T.T., etal. (2008) Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 4: e1000163.
-
(2008)
PLoS Genet
, vol.4
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
-
72
-
-
67349278437
-
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes
-
Sittka, A., Sharma, C.M., Rolle, K., and Vogel, J. (2009) Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol 6: 266-275.
-
(2009)
RNA Biol
, vol.6
, pp. 266-275
-
-
Sittka, A.1
Sharma, C.M.2
Rolle, K.3
Vogel, J.4
-
73
-
-
77953090678
-
Positive regulation by small RNAs and the role of Hfq
-
Soper, T., Mandin, P., Majdalani, N., Gottesman, S., and Woodson, S.A. (2010) Positive regulation by small RNAs and the role of Hfq. Proc Natl Acad Sci USA 107: 9602-9607.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 9602-9607
-
-
Soper, T.1
Mandin, P.2
Majdalani, N.3
Gottesman, S.4
Woodson, S.A.5
-
74
-
-
0036714801
-
Predicted structure and phyletic distribution of the RNA-binding protein Hfq
-
Sun, X., Zhulin, I., and Wartell, R.M. (2002) Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res 30: 3662-3671.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3662-3671
-
-
Sun, X.1
Zhulin, I.2
Wartell, R.M.3
-
75
-
-
0033590183
-
Negative regulatory role of the Escherichia coli hfq gene in cell division
-
Takada, A., Wachi, M., and Nagai, K. (1999) Negative regulatory role of the Escherichia coli hfq gene in cell division. Biochem Biophys Res Commun 266: 579-583.
-
(1999)
Biochem Biophys Res Commun
, vol.266
, pp. 579-583
-
-
Takada, A.1
Wachi, M.2
Nagai, K.3
-
76
-
-
21644439017
-
A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells
-
Takada, A., Nagai, K., and Wachi, M. (2005) A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells. Genes Cells 10: 733-741.
-
(2005)
Genes Cells
, vol.10
, pp. 733-741
-
-
Takada, A.1
Nagai, K.2
Wachi, M.3
-
77
-
-
0028243445
-
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
-
Tsui, H.C., Leung, H.C., and Winkler, M.E. (1994) Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol 13: 35-49.
-
(1994)
Mol Microbiol
, vol.13
, pp. 35-49
-
-
Tsui, H.C.1
Leung, H.C.2
Winkler, M.E.3
-
78
-
-
45849125346
-
Singlet oxygen generation in the reaction centers of Rhodobacter sphaeroides
-
Uchoa, A.F., Knox, P.P., Turchielle, R., Seifullina, N., and Baptista, M.S. (2008) Singlet oxygen generation in the reaction centers of Rhodobacter sphaeroides. Eur Biophys J 37: 843-850.
-
(2008)
Eur Biophys J
, vol.37
, pp. 843-850
-
-
Uchoa, A.F.1
Knox, P.P.2
Turchielle, R.3
Seifullina, N.4
Baptista, M.S.5
-
79
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
Udekwu, K.I., Darfeuille, F., Vogel, J., Reimegard, J., Holmqvist, E., and Wagner, E.G. (2005) Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev 19: 2355-2366.
-
(2005)
Genes Dev
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
Wagner, E.G.6
-
80
-
-
0033854238
-
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
-
Urbanowski, M.L., Stauffer, L.T., and Stauffer, G.V. (2000) The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37: 856-868.
-
(2000)
Mol Microbiol
, vol.37
, pp. 856-868
-
-
Urbanowski, M.L.1
Stauffer, L.T.2
Stauffer, G.V.3
-
81
-
-
0035910078
-
Epitope tagging of chromosomal genes in Salmonella
-
Uzzau, S., Figueroa-Bossi, N., Rubino, S., and Bossi, L. (2001) Epitope tagging of chromosomal genes in Salmonella. Proc Natl Acad Sci USA 98: 15264-15269.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 15264-15269
-
-
Uzzau, S.1
Figueroa-Bossi, N.2
Rubino, S.3
Bossi, L.4
-
82
-
-
21844476794
-
Translational autocontrol of the Escherichia coli hfq RNA chaperone gene
-
Večerek, B., Moll, I., and Blasi, U. (2005) Translational autocontrol of the Escherichia coli hfq RNA chaperone gene. RNA 11: 976-984.
-
(2005)
RNA
, vol.11
, pp. 976-984
-
-
Večerek, B.1
Moll, I.2
Blasi, U.3
-
83
-
-
38349138513
-
The C-terminal domain of Escherichia coli Hfq is required for regulation
-
Večerek, B., Rajkowitsch, L., Sonnleitner, E., Schroeder, R., and Blasi, U. (2008) The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res 36: 133-143.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 133-143
-
-
Večerek, B.1
Rajkowitsch, L.2
Sonnleitner, E.3
Schroeder, R.4
Blasi, U.5
-
84
-
-
70350129683
-
Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti
-
Voss, B., Holscher, M., Baumgarth, B., Kalbfleisch, A., Kaya, C., Hess, W.R., etal. (2009) Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochem Biophys Res Commun 390: 331-336.
-
(2009)
Biochem Biophys Res Commun
, vol.390
, pp. 331-336
-
-
Voss, B.1
Holscher, M.2
Baumgarth, B.3
Kalbfleisch, A.4
Kaya, C.5
Hess, W.R.6
-
85
-
-
28544442127
-
Eukaryotic Lsm proteins: lessons from bacteria
-
Wilusz, C.J., and Wilusz, J. (2005) Eukaryotic Lsm proteins: lessons from bacteria. Nat Struct Mol Biol 12: 1031-1036.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 1031-1036
-
-
Wilusz, C.J.1
Wilusz, J.2
-
86
-
-
0028889264
-
Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the fnrL gene
-
Zeilstra-Ryalls, J.H., and Kaplan, S. (1995) Aerobic and anaerobic regulation in Rhodobacter sphaeroides 2.4.1: the role of the fnrL gene. J Bacteriol 177: 6422-6431.
-
(1995)
J Bacteriol
, vol.177
, pp. 6422-6431
-
-
Zeilstra-Ryalls, J.H.1
Kaplan, S.2
-
87
-
-
1542313800
-
Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm
-
Zeilstra-Ryalls, J.H., and Kaplan, S. (2004) Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm. Cell Mol Life Sci 61: 417-436.
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 417-436
-
-
Zeilstra-Ryalls, J.H.1
Kaplan, S.2
-
88
-
-
6444227759
-
Detoxification of hydrogen peroxide and expression of catalase genes in Rhodobacter
-
Zeller, T., and Klug, G. (2004) Detoxification of hydrogen peroxide and expression of catalase genes in Rhodobacter. Microbiology 150: 3451-3462.
-
(2004)
Microbiology
, vol.150
, pp. 3451-3462
-
-
Zeller, T.1
Klug, G.2
-
89
-
-
34248360656
-
Regulation of hydrogen peroxide-dependent gene expression in Rhodobacter sphaeroides: regulatory functions of OxyR
-
Zeller, T., Mraheil, M.A., Moskvin, O.V., Li, K., Gomelsky, M., and Klug, G. (2007) Regulation of hydrogen peroxide-dependent gene expression in Rhodobacter sphaeroides: regulatory functions of OxyR. J Bacteriol 189: 3784-3792.
-
(2007)
J Bacteriol
, vol.189
, pp. 3784-3792
-
-
Zeller, T.1
Mraheil, M.A.2
Moskvin, O.V.3
Li, K.4
Gomelsky, M.5
Klug, G.6
-
90
-
-
0036163624
-
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
-
Zhang, A., Wassarman, K.M., Ortega, J., Steven, A.C., and Storz, G. (2002) The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs. Mol Cell 9: 11-22.
-
(2002)
Mol Cell
, vol.9
, pp. 11-22
-
-
Zhang, A.1
Wassarman, K.M.2
Ortega, J.3
Steven, A.C.4
Storz, G.5
-
91
-
-
0141644746
-
Global analysis of small RNA and mRNA targets of Hfq
-
Zhang, A., Wassarman, K.M., Rosenow, C., Tjaden, B.C., Storz, G., and Gottesman, S. (2003) Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol 50: 1111-1124.
-
(2003)
Mol Microbiol
, vol.50
, pp. 1111-1124
-
-
Zhang, A.1
Wassarman, K.M.2
Rosenow, C.3
Tjaden, B.C.4
Storz, G.5
Gottesman, S.6
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