-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
18144373854
-
A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis
-
Anthony, J. R., K. L. Warczak, and T. J. Donohue. 2005. A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis. Proc. Natl. Acad. Sci. USA 102:6502-6507.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6502-6507
-
-
Anthony, J.R.1
Warczak, K.L.2
Donohue, T.J.3
-
4
-
-
34248157617
-
Formation and geminate quenching of singlet oxygen in purple bacterial reaction center
-
Arellano, J. B., Y. A. Yousef, T. B. Melø, S. B. B. Mohamad, R. J. Cogdell, and K. R. Naqvi. 2007. Formation and geminate quenching of singlet oxygen in purple bacterial reaction center. J. Photochem. Photobiol. B 87:105-112.
-
(2007)
J. Photochem. Photobiol. B
, vol.87
, pp. 105-112
-
-
Arellano, J.B.1
Yousef, Y.A.2
Melø, T.B.3
Mohamad, S.B.B.4
Cogdell, R.J.5
Naqvi, K.R.6
-
5
-
-
0036371637
-
A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides
-
Braatsch, S., M. Gomelsky, S. Kuphal, and G. Klug. 2002. A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides. Mol. Microbiol. 45:827-836.
-
(2002)
Mol. Microbiol
, vol.45
, pp. 827-836
-
-
Braatsch, S.1
Gomelsky, M.2
Kuphal, S.3
Klug, G.4
-
6
-
-
7744242257
-
Responses of the Rhodobacter sphaeroides transcriptome to blue light under semiaerobic conditions
-
Braatsch, S., O. V. Moskvin, G. Klug, and M. Gomelsky. 2004. Responses of the Rhodobacter sphaeroides transcriptome to blue light under semiaerobic conditions. J. Bacteriol. 186:7726-7735.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7726-7735
-
-
Braatsch, S.1
Moskvin, O.V.2
Klug, G.3
Gomelsky, M.4
-
7
-
-
34548252292
-
A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria
-
Campbell, E. A., R. Greenwell, J. R. Anthony, S. Wang, L. Lim, K. Das, H. J. Sofia, T. J. Donohue, and S. A. Darst. 2007. A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol. Cell 27:793-805.
-
(2007)
Mol. Cell
, vol.27
, pp. 793-805
-
-
Campbell, E.A.1
Greenwell, R.2
Anthony, J.R.3
Wang, S.4
Lim, L.5
Das, K.6
Sofia, H.J.7
Donohue, T.J.8
Darst, S.A.9
-
8
-
-
0034730968
-
How carotenoids protect bacterial photosynthesis
-
Cogdell, R. J., T. D. Howard, R. Bittl, E. Schlodder, I. Geisenheimer, and W. Lubitz. 2000. How carotenoids protect bacterial photosynthesis. Philos. Trans. R. Soc. Lond. B 355:1345-1349.
-
(2000)
Philos. Trans. R. Soc. Lond. B
, vol.355
, pp. 1345-1349
-
-
Cogdell, R.J.1
Howard, T.D.2
Bittl, R.3
Schlodder, E.4
Geisenheimer, I.5
Lubitz, W.6
-
9
-
-
0021195497
-
Metabolism of methylglyoxal in microorganisms
-
Cooper, R. A. 1984. Metabolism of methylglyoxal in microorganisms. Annu. Rev. Microbiol. 38:49-68.
-
(1984)
Annu. Rev. Microbiol
, vol.38
, pp. 49-68
-
-
Cooper, R.A.1
-
10
-
-
3042688696
-
Reactive species formed on proteins exposed to singlet oxygen
-
Davies, M. J. 2004. Reactive species formed on proteins exposed to singlet oxygen. Photochem. Photobiol. Sci. 3:17-25.
-
(2004)
Photochem. Photobiol. Sci
, vol.3
, pp. 17-25
-
-
Davies, M.J.1
-
11
-
-
0037564169
-
Singlet oxygen-mediated damage to proteins and its consequences
-
Davies, M. J. 2003. Singlet oxygen-mediated damage to proteins and its consequences. Biochem. Biophys. Res. Commun. 305:761-770.
-
(2003)
Biochem. Biophys. Res. Commun
, vol.305
, pp. 761-770
-
-
Davies, M.J.1
-
12
-
-
33750480906
-
An RpoH-like heat shock sigma factor is involved in stress response and virulence in Brucella melitensis 16M
-
Delory, M., R. Hallez, J.-J. Letesson, and X. De Bolle. 2006. An RpoH-like heat shock sigma factor is involved in stress response and virulence in Brucella melitensis 16M. J. Bacteriol. 188:7707-7710.
-
(2006)
J. Bacteriol
, vol.188
, pp. 7707-7710
-
-
Delory, M.1
Hallez, R.2
Letesson, J.-J.3
De Bolle, X.4
-
13
-
-
0025637021
-
Carotenoids, tocopherols and thiols as biological singlet molecular oxygen quenchers
-
Di Mascio, P., T. P. A. Devasagayam, S. Kaiser, and H. Sies. 1990. Carotenoids, tocopherols and thiols as biological singlet molecular oxygen quenchers. Biochem. Soc. Trans. 18:1054-1056.
-
(1990)
Biochem. Soc. Trans
, vol.18
, pp. 1054-1056
-
-
Di Mascio, P.1
Devasagayam, T.P.A.2
Kaiser, S.3
Sies, H.4
-
15
-
-
33644654027
-
The glutathione peroxidase homologous gene GpxH in Chlamydomonas reinhardtii is upregulated by singlet oxygen produced in photosystem II
-
Fischer, B. B., R. I. L. Eggen, A. Trebst, and A. Krieger-Liszkay. 2006. The glutathione peroxidase homologous gene GpxH in Chlamydomonas reinhardtii is upregulated by singlet oxygen produced in photosystem II. Planta 223:583-590.
-
(2006)
Planta
, vol.223
, pp. 583-590
-
-
Fischer, B.B.1
Eggen, R.I.L.2
Trebst, A.3
Krieger-Liszkay, A.4
-
16
-
-
21344459291
-
Photo-oxidative stress in Rhodobacter sphaeroides: Protective role of carotenoids and expression of selected genes
-
Glaeser, J., and G. Klug. 2005. Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes. Microbiology 151:1927-1938.
-
(2005)
Microbiology
, vol.151
, pp. 1927-1938
-
-
Glaeser, J.1
Klug, G.2
-
17
-
-
34547199027
-
Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter
-
Glaeser, J., M. Zobawa, F. Lottspeich, and G. Klug. 2007. Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter. J. Proteome Res. 6:2460-2471.
-
(2007)
J. Proteome Res
, vol.6
, pp. 2460-2471
-
-
Glaeser, J.1
Zobawa, M.2
Lottspeich, F.3
Klug, G.4
-
19
-
-
33748648583
-
II, a second member of the heat shock sigma factor family
-
II, a second member of the heat shock sigma factor family. J. Bacteriol. 188:5712-5721.
-
(2006)
J. Bacteriol
, vol.188
, pp. 5712-5721
-
-
Green, H.A.1
Donohue, T.J.2
-
20
-
-
0032874676
-
Regulation of bacterial photosynthesis genes by oxygen and light
-
Gregor, J., and G. Klug. 1999. Regulation of bacterial photosynthesis genes by oxygen and light. FEMS Microbiol. Lett. 179:1-9.
-
(1999)
FEMS Microbiol. Lett
, vol.179
, pp. 1-9
-
-
Gregor, J.1
Klug, G.2
-
21
-
-
27444435780
-
Light-dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two-component system and the photoreceptor AppA
-
Happ, H. N., S. Braatsch, V. Broschek, L. Osterloh, and G. Klug. 2005. Light-dependent regulation of photosynthesis genes in Rhodobacter sphaeroides 2.4.1 is coordinately controlled by photosynthetic electron transport via the PrrBA two-component system and the photoreceptor AppA. Mol. Microbiol. 58:903-914.
-
(2005)
Mol. Microbiol
, vol.58
, pp. 903-914
-
-
Happ, H.N.1
Braatsch, S.2
Broschek, V.3
Osterloh, L.4
Klug, G.5
-
23
-
-
0025727991
-
Expression of regulatory nif genes in Rhodobacter capsulatus
-
Hübner, P., J. C. Willison, P. M. Vignais, and T. A. Bickle. 1991. Expression of regulatory nif genes in Rhodobacter capsulatus. J. Bacteriol. 173:2993-2999.
-
(1991)
J. Bacteriol
, vol.173
, pp. 2993-2999
-
-
Hübner, P.1
Willison, J.C.2
Vignais, P.M.3
Bickle, T.A.4
-
24
-
-
0032703938
-
Methylglyoxal in living organisms: Chemistry, biochemistry, toxicology and biological implications
-
Kalapos, M. P. 1999. Methylglyoxal in living organisms: chemistry, biochemistry, toxicology and biological implications. Toxicol. Lett. 110:145-175.
-
(1999)
Toxicol. Lett
, vol.110
, pp. 145-175
-
-
Kalapos, M.P.1
-
25
-
-
0031983780
-
Metabolic roles of a Rhodobacter sphaeroides member of the sigma 32 family
-
Karls, R. K., J. Brooks, P. Rossmeissl, J. Luedke, and T. J. Donohue. 1998. Metabolic roles of a Rhodobacter sphaeroides member of the sigma 32 family. J. Bacteriol. 180:10-19.
-
(1998)
J. Bacteriol
, vol.180
, pp. 10-19
-
-
Karls, R.K.1
Brooks, J.2
Rossmeissl, P.3
Luedke, J.4
Donohue, T.J.5
-
26
-
-
0023715368
-
Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria
-
Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene 70:191-197.
-
(1988)
Gene
, vol.70
, pp. 191-197
-
-
Keen, N.T.1
Tamaki, S.2
Kobayashi, D.3
Trollinger, D.4
-
27
-
-
0345276491
-
Pyrroloquinoline-quinone synthesized in Escherichia coli by pyrroloquinoline-quinone synthase of Deinococcus radiodurans plays a role beyond mineral phosphate solubilization
-
Khairnar, N. P., H. S. Misra, and S. K. Apte. 2003. Pyrroloquinoline-quinone synthesized in Escherichia coli by pyrroloquinoline-quinone synthase of Deinococcus radiodurans plays a role beyond mineral phosphate solubilization. Biochem. Biophys. Res. Commun. 312:303-308.
-
(2003)
Biochem. Biophys. Res. Commun
, vol.312
, pp. 303-308
-
-
Khairnar, N.P.1
Misra, H.S.2
Apte, S.K.3
-
28
-
-
6044257941
-
Ribose utilization with an excess of mutarotase causes cell death due to accumulation of methylglyoxal
-
Kim, I., E. Kim, S. Yoo, D. Shin, B. Min, J. Song, and C. Park. 2004. Ribose utilization with an excess of mutarotase causes cell death due to accumulation of methylglyoxal. J. Bacteriol. 186:7229-7235.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7229-7235
-
-
Kim, I.1
Kim, E.2
Yoo, S.3
Shin, D.4
Min, B.5
Song, J.6
Park, C.7
-
29
-
-
23644445048
-
Conversion of methylglyoxal to acetol by Escherichia coli aldo-keto reductases
-
Ko, J., I. Kim, S. Yoo, B. Min, K. Kim, and C. Park. 2005. Conversion of methylglyoxal to acetol by Escherichia coli aldo-keto reductases. J. Bacteriol. 187:5782-5789.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5782-5789
-
-
Ko, J.1
Kim, I.2
Yoo, S.3
Min, B.4
Kim, K.5
Park, C.6
-
30
-
-
0034918342
-
The glutathione peroxidase homologous gene from Chlamydomonas reinhardtii is transcriptionally up-regulated by singlet oxygen
-
Leisinger, U., K. Rufenacht, B. Fischer, M. Pesaro, A. Spengler, A. J. Zehnder, and R. I. Eggen. 2001. The glutathione peroxidase homologous gene from Chlamydomonas reinhardtii is transcriptionally up-regulated by singlet oxygen. Plant Mol. Biol. 46:395-408.
-
(2001)
Plant Mol. Biol
, vol.46
, pp. 395-408
-
-
Leisinger, U.1
Rufenacht, K.2
Fischer, B.3
Pesaro, M.4
Spengler, A.5
Zehnder, A.J.6
Eggen, R.I.7
-
31
-
-
35848942389
-
Postgenomic adventures with Rhodobacter sphaeroides
-
Mackenzie, C., J. M. Eraso, M. Choudhary, J. H. Roh, X. Zeng, P. Bruscella, A. Puskas, and S. Kaplan. 2007. Postgenomic adventures with Rhodobacter sphaeroides. Annu. Rev. Microbiol. 61:283-307.
-
(2007)
Annu. Rev. Microbiol
, vol.61
, pp. 283-307
-
-
Mackenzie, C.1
Eraso, J.M.2
Choudhary, M.3
Roh, J.H.4
Zeng, X.5
Bruscella, P.6
Puskas, A.7
Kaplan, S.8
-
32
-
-
0037031561
-
AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides
-
Masuda, S., and C. E. Bauer. 2002. AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides. Cell 110:613-623.
-
(2002)
Cell
, vol.110
, pp. 613-623
-
-
Masuda, S.1
Bauer, C.E.2
-
33
-
-
9644310554
-
Pyrroloquinoline-quinone: A reactive oxygen species scavenger in bacteria
-
Misra, H. S., N. P. Khairnar, A. Barik, K. Indira Priyadarsini, H. Mohan, and S. K. Apte. 2004. Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria. FEBS Lett. 578:26-30.
-
(2004)
FEBS Lett
, vol.578
, pp. 26-30
-
-
Misra, H.S.1
Khairnar, N.P.2
Barik, A.3
Indira Priyadarsini, K.4
Mohan, H.5
Apte, S.K.6
-
34
-
-
1242298607
-
Protective mechanisms against peptide and protein peroxides generated by singlet oxygen
-
Morgan, P. E., R. T. Dean, and M. J. Davies. 2004. Protective mechanisms against peptide and protein peroxides generated by singlet oxygen. Free Radic. Biol. Med. 36:484-496.
-
(2004)
Free Radic. Biol. Med
, vol.36
, pp. 484-496
-
-
Morgan, P.E.1
Dean, R.T.2
Davies, M.J.3
-
35
-
-
0034870398
-
32 homolog (RpoH) plays a major role in the heat shock response of Agrobacterium tumefaciens
-
32 homolog (RpoH) plays a major role in the heat shock response of Agrobacterium tumefaciens. J. Bacteriol. 183:5302-5310.
-
(2001)
J. Bacteriol
, vol.183
, pp. 5302-5310
-
-
Nakahigashi, K.1
Yanagi, H.2
Yura, T.3
-
37
-
-
34347384620
-
5-Methyltetrahydrofolate inhibits photosensitization reactions and strand breaks in DNA
-
Offer, T., B. N. Ames, S. W. Bailey, E. A. Sabens, M. Nozawa, and J. E. Ayling. 2007. 5-Methyltetrahydrofolate inhibits photosensitization reactions and strand breaks in DNA. FASEB J. 21:2101-2107.
-
(2007)
FASEB J
, vol.21
, pp. 2101-2107
-
-
Offer, T.1
Ames, B.N.2
Bailey, S.W.3
Sabens, E.A.4
Nozawa, M.5
Ayling, J.E.6
-
38
-
-
0034807840
-
Identification of the heat-shock sigma factor RpoH and a second RpoH-like protein in Sinorhizobium meliloti
-
Oke, V., B. G. Rushing, E. J. Fisher, M. Moghadam-Tabrizi, and S. R. Long. 2001. Identification of the heat-shock sigma factor RpoH and a second RpoH-like protein in Sinorhizobium meliloti. Microbiology 147:2399-2408.
-
(2001)
Microbiology
, vol.147
, pp. 2399-2408
-
-
Oke, V.1
Rushing, B.G.2
Fisher, E.J.3
Moghadam-Tabrizi, M.4
Long, S.R.5
-
39
-
-
3042731015
-
Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: Transcriptome flexibility at diverse growth modes
-
Pappas, C. T., J. Sram, O. V. Moskvin, P. S. Ivanov, R. C. Mackenzie, M. Choudhary, M. L. Land, F. W. Larimer, S. Kaplan, and M. Gomelsky. 2004. Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes. J. Bacteriol. 186:4748-4758.
-
(2004)
J. Bacteriol
, vol.186
, pp. 4748-4758
-
-
Pappas, C.T.1
Sram, J.2
Moskvin, O.V.3
Ivanov, P.S.4
Mackenzie, R.C.5
Choudhary, M.6
Land, M.L.7
Larimer, F.W.8
Kaplan, S.9
Gomelsky, M.10
-
40
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
41
-
-
0025896072
-
Plasmid vectors for selecting IS1-promoted deletions in cloned DNA: Sequence analysis of the omega interposon
-
Prentki, P., A. Binda, and A. Epstein. 1991. Plasmid vectors for selecting IS1-promoted deletions in cloned DNA: sequence analysis of the omega interposon. Gene 103:17-23.
-
(1991)
Gene
, vol.103
, pp. 17-23
-
-
Prentki, P.1
Binda, A.2
Epstein, A.3
-
42
-
-
0038305458
-
Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors
-
Sancar, A. 2003. Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. Chem. Rev. 103:2203-2238.
-
(2003)
Chem. Rev
, vol.103
, pp. 2203-2238
-
-
Sancar, A.1
-
43
-
-
0028934624
-
ChrR positively regulates transcription of the Rhodobacter sphaeroides cytochrome c2 gene
-
Schilke, B. A., and T. J. Donohue. 1995. ChrR positively regulates transcription of the Rhodobacter sphaeroides cytochrome c2 gene. J. Bacteriol. 177:1929-1937.
-
(1995)
J. Bacteriol
, vol.177
, pp. 1929-1937
-
-
Schilke, B.A.1
Donohue, T.J.2
-
44
-
-
0001032488
-
Blue-light irradiation reduces the expression of puf and puc operons of Rhodobacter sphaeroides under semi-aerobic conditions
-
Shimada, H., K. Iba, and K.-i. Takamiya. 1992. Blue-light irradiation reduces the expression of puf and puc operons of Rhodobacter sphaeroides under semi-aerobic conditions. Plant Cell Physiol. 33:471-475.
-
(1992)
Plant Cell Physiol
, vol.33
, pp. 471-475
-
-
Shimada, H.1
Iba, K.2
Takamiya, K.-I.3
-
45
-
-
0022559895
-
Plasmid vectors for the genetic analysis and manipulation of Rhizobia and other gram-negative bacteria
-
Simon, R., M. O'Connell, M. Labes, and A. Puhler. 1986. Plasmid vectors for the genetic analysis and manipulation of Rhizobia and other gram-negative bacteria. Methods Enzymol. 118:640-659.
-
(1986)
Methods Enzymol
, vol.118
, pp. 640-659
-
-
Simon, R.1
O'Connell, M.2
Labes, M.3
Puhler, A.4
-
46
-
-
45849125346
-
Singlet oxygen generation in the reaction centers of Rhodobacter sphaeroides
-
Uchoa, A., P. Knox, R. Turchielle, N. Seifullina, and M. Baptista. 2008. Singlet oxygen generation in the reaction centers of Rhodobacter sphaeroides. Eur. Biophys. J. 37:843-850.
-
(2008)
Eur. Biophys. J
, vol.37
, pp. 843-850
-
-
Uchoa, A.1
Knox, P.2
Turchielle, R.3
Seifullina, N.4
Baptista, M.5
-
47
-
-
0003057316
-
The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria
-
van Niel, C. B. 1944. The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria. Bacteriol. Rev. 8:1-118.
-
(1944)
Bacteriol. Rev
, vol.8
, pp. 1-118
-
-
van Niel, C.B.1
-
48
-
-
34948837440
-
The significance of type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides
-
Wakita, M., S. Masuda, K. Motohashi, T. Hisabori, H. Ohta, and K.-I. Takamiya. 2007. The significance of type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides. J. Biol. Chem. 282:27792-27801.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 27792-27801
-
-
Wakita, M.1
Masuda, S.2
Motohashi, K.3
Hisabori, T.4
Ohta, H.5
Takamiya, K.-I.6
-
49
-
-
0032469905
-
Control of photosystem formation in Rhodobacter sphaeroides
-
Zeilstra-Ryalls, J., M. Gomelsky, J. M. Eraso, A. Yeliseev, J. O'Gara, and S. Kaplan. 1998. Control of photosystem formation in Rhodobacter sphaeroides. J. Bacteriol. 180:2801-2809.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2801-2809
-
-
Zeilstra-Ryalls, J.1
Gomelsky, M.2
Eraso, J.M.3
Yeliseev, A.4
O'Gara, J.5
Kaplan, S.6
-
50
-
-
1542313800
-
Oxygen intervention in the regulation of gene expression: The photosynthetic bacterial paradigm
-
Zeilstra-Ryalls, J. H., and S. Kaplan. 2004. Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm. Cell. Mol. Life Sci. 61:417-436.
-
(2004)
Cell. Mol. Life Sci
, vol.61
, pp. 417-436
-
-
Zeilstra-Ryalls, J.H.1
Kaplan, S.2
|