The Molecular Biology of Ilarviruses

Advances in Virus Research

Volumn 87, Issue , 2013, Pages 139-181

  Pallas, Vicente ^a   Aparicio, Frederic ^a   Herranz, Mari C ^a   Sanchez Navarro, Jesus A ^a   Scott, Simon W ^b  

^a Ciudad Politécnica de la Innovación   (Spain)

^b CLEMSON UNIVERSITY   (United States)

Author keywords

Coat protein; Genome activation; Host responses; Ilarvirus; Movement protein; Plant virus; RNA conformational switch; Seed transmission; Viral translation

Indexed keywords

EID: 84879567824     PISSN: 00653527     EISSN: 15578399     Source Type: Book Series    
DOI: 10.1016/B978-0-12-407698-3.00005-3     Document Type: Chapter

References (201)

1. Abou-Jawdah Y., Sobh H., Cordahi N., Kawtharani H., Nemer G., Maxwell D.P., et al. Immunodiagnosis of Prune dwarf virus using antiserum produced to its recombinant coat protein. Journal of Virological Methods 2004, 121:31-38.
2. Adkins S., Kao C.C. Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases. Virology 1998, 252:1-8.
3. Ahlquist P., Noueiry A.O., Lee W.M., Kushner D.B., Dye B.T. Host factors in positive-strand RNA virus genome replication. Journal of Virology 2003, 77:8181-8186.
4. Ahola T., den Boon J.A., Ahlquist P. Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. Journal of Virology 2000, 74:8803-8811.
5. Amari K., Burgos L., Pallas V., Sanchez-Pina M.A. Prunus necrotic ringspot virus early invasion and its effects on apricot pollen grain performance. Phytopathology 2007, 97:892-899.
6. Amari K., Burgos L., Pallas V., Sanchez-Pina M.A. Vertical transmission of Prunus necrotic ringspot virus: Hitch-hiking from gametes to seedling. The Journal of General Virology 2009, 90:1767-1774.
7. Ansel-McKinney P., Gehrke L. RNA determinants of a specific RNA-coat protein peptide interaction in alfalfa mosaic virus: Conservation of homologus features in Ilarvirus RNAs. Journal of Molecular Biology 1998, 278:767-785.
8. Ansel-McKinney P., Scott S.W., Swanson M., Ge X., Gehrke L. A plant viral coat protein RNA binding consensus sequence contains a crucial arginine. The EMBO Journal 1996, 15:5077-5084.
9. Aparicio F., Aparicio-Sanchis R., Gadea J., Sánchez-Navarro J.A., Pallás V., Murguía J.R. A plant virus movement protein regulates the Gcn2p kinase in budding yeast. PLoS One 2011, 6(11):e27409.
10. Aparício F., Aramburu J., Soler S., Galipienso L., Nuez F., Pallas V., et al. Immunodiagnosis of Parietaria mottle virus in tomato crops using a polyclonal antiserum against its coat protein expressed in a bacterial system. Journal of Phytopathology 2009, 157:511-513.
11. Aparicio F., Myrta A., Di Terlizzi B., Pallas V. Molecular variability among isolates of Prunus necrotic ringspot virus from different Prunus spp. Phytopathology 1999, 89:991-999.
12. Aparicio F., Pallás V. Molecular variability analysis of the RNA 3 of fifteen isolates of Prunus necrotic ringspot virus sheds light on the minimal requirements for the synthesis of the subgenomic RNA. Virus Genes 2002, 25:75-84.
13. Aparicio F., Pallas V., Sanchez-Navarro J. Implication of the C terminus of the Prunus necrotic ringspot virus movement protein in cell-to-cell transport and in its interaction with the coat protein. The Journal of General Virology 2010, 91:1865-1870.
14. Aparicio F., Sanchez-Navarro J.A., Olsthoorn R.C., Pallas V., Bol J.F. Recognition of cis-acting sequences in RNA 3 of Prunus necrotic ringspot virus by the replicase of Alfalfa mosaic virus. The Journal of General Virology 2001, 82:947-951.
15. Aparicio F., Sánchez-Navarro J.A., Pallás V. In vitro and in vivo mapping of the Prunus necrotic ringspot virus coat protein C-terminal dimerization domain by bimolecular fluorescence complementation. The Journal of General Virology 2006, 87:1745-1750.
16. Aparicio F., Sanchez-Pina M.A., Sanchez-Navarro J.A., Pallas V. Location of prunus necrotic ringspot ilarvirus within pollen grains of infected nectarine trees: Evidence from RT-PCR, dot-blot and in situ hybridisation. European Journal of Plant Pathology 1999, 105:623-627.
17. Aparicio F., Vilar M., Perez-Paya E., Pallas V. The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA. Virology 2003, 313:213-223.
18. Aramburu J., Galipienso L., Aparicio F., Soler S., Lopez C. Mode of transmission of Parietaria mottle virus. Journal of Plant Pathology 2010, 92:679-684.
19. Baer M., Houser F., Loesch-Fries L.S., Gehrke L. Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein. The EMBO Journal 1994, 13:727-735.
20. Batuman O., Miyao G., Kuo Y.-W., Chen L.-F., Davis R.M., Gilbertson R.L. An outbreak of a necrosis disease of tomato in California in 2008 was caused by a new ilarvirus species related to Parietaria mottle virus. Plant Disease 2009, 93:546.
21. Bellés J.M., Garro R., Pallás V., Fayos J., Rodrigo I., Conejero V. Accumulation of gentisic acid as associated with systemic infections but not with the hypersensitive response in plant-pathogen interactions. Planta 2006, 223:500-511.
22. Belles J.M., Lopez-Gresa M.P., Fayos J., Pallás V., Rodrigo I., Conejero V. Induction of cinnamate 4-hydroxylase and phenylpropanoids in virus-infected cucumber and melon plants. Plant Science 2008, 174:524-533.
23. Berg J.M. Potential metal binding domains in nucleic acid binding proteins. Science 1986, 232:485-486.
24. Berna A., Gafny R., Wolf S., Lucas W.J., Holt C.A., Beachy R.N. The TMV movement protein: Role of the C-terminal 73 amino acids in subcellular localization and function. Virology 1991, 182:682-689.
25. Bhat A.I., Jain R.K., Chaudhary V., Krishna Reddy M., Ramiah M., Chattannavar S.N., et al. Sequence conservation in the coat protein gene of Tobacco streak virus isolates causing necrosis in cotton, mungbean, sunflower and sun-hemp in India. Indian Journal of Biotechnology 2002, 1:350-356.
26. Blackman L.M., Boevink P., Cruz S.S., Palukaitis P., Oparka K.J. The movement protein of cucumber mosaic virus traffics into sieve elements in minor veins of Nicotiana clevelandii. The Plant Cell 1998, 10:525-537.
27. Boari A., Boscia D., Yurtmen M., Potere O., Torturo C., Savino V. Production of monoclonal antibodies to prune dwarf ilarvirus and their use in the serological characterization of almond virus isolates. EPPO Bulletin 1997, 27:555-556.
28. Bol J.F. Replication of alfamo- and ilarviruses: Role of the coat protein. Annual Review of Phytopathology 2005, 43:39-62.
29. Bol J.F., van Vloten-Doting L., Jaspars E.M.J. A functional equivalence of top component a RNA and coat protein in the initiation of infection by alfalfa mosaic virus. Virology 1971, 46:73-85.
30. Bos L., Huttinga H., Maat D.Z. Spinach latent virus, a new ilarvirus seed-borne in Spinacia oleracea. The Netherlands Journal of Plant Pathology 1980, 86:79-98.
31. Boulila M. Recombination structure and genetic relatedness among members of the family Bromoviridae based on their RNAs 1 and 2 sequence analyses. Virus Genes 2009, 38:435-444.
32. Brill L.M., Nunn R.S., Kahn T.W., Yeager M., Beachy R.N. Recombinant tobacco mosaic virus movement protein is an RNA-binding, alpha-helical membrane protein. Proceedings of the National Academy of Science United States of America 2000, 97:7112-7117.
33. Bristow P.R., Martin R.R. Transmission and the role of honeybees in field spread of blueberry shock ilarvirus, a pollen-borne virus of highbush blueberry. Phytopathology 1999, 89:124-130.
34. Bristow P.R., Martin R.R. Recovery of plants infected with blueberry shock ilarvirus (BlShV). Acta Horticulturae 2002, 574:85-89.
35. Bruenn J.A. A structural and prima ry sequence comparison of the viral RNA-dependent RNA polymerases. Nucleic Acids Research 2003, 31:1821-1829.
36. Bujarski J., Figlerowicz M., Gallitelli D., Roossinck M.J., Scott S.W. Family Bromoviridae 2012, 965-976. Elsevier Academic Press, San Diego, CA.
37. Candresse T., Morch M.D., Dunez J. Multiple alignment and hierarchical clustering of conserved amino acid sequences in the replication-associated proteins of plant RNA viruses. Research in Virology 1990, 141:315-329.
38. Carr J.P., Lewsey M.G., Palukaitis P. Signaling in induced resistance. Advances in Virus Research 2010, 76:57-121.
39. Carrington J.C., Kasschau K.D., Mahajan S.K., Schaad M.C. Cell-to-cell and long-distance transport of viruses in plants. The Plant Cell 1996, 8:1669-1681.
40. Caruthers J.M., McKay D.B. Helicase structure and mechanism. Current Opinion in Structural Biology 2002, 12:123-133.
41. Cation D. Transmission of viruses through cherry seeds. Phytopathology 1949, 39:4.
42. Chen S.C., Gultyaev A.P., Pleij C.W.A., Olsthoorn R.C.L. A secondary structure model for the 3'-untranslated region of ilarvirus RNAs. Viral genomes: Diversity, properties and parameters 2009, Nova Science Publishers, Hauppage, NY. Z. Feng, M. Long (Eds.).
43. Chen S.C., Olsthoorn R.C.L. In vitro and in vivo studies of the RNA conformational switch in Alfalfa mosaic virus. Journal of Virology 2010, 84:1423-1429.
44. Citovsky V., Wong M.L., Shaw A.L., Venkataram P.B.V., Zambryski P. Visualisation and characterisation of Tobacco mosaic virus movement protein binding to single-stranded nucleic acids. The Plant Cell 1992, 4:397-411.
45. Codoñer F.M., Cuevas J.M., Sanchez-Navarro J.A., Pallas V., Elena S.F. Molecular evolution of the plant virus family Bromoviridae based on RNA3-encoded proteins. Journal of Molecular Evolution 2005, 61:697-705.
46. Codoñer F.M., Elena S.F. Evolutionary relationships among members of the Bromoviridae deduced from whole proteome analysis. Archives of Virology 2006, 151:299-307.
47. Codoñer F.M., Elena S.F. The promiscuous evolutionary history of the Bromoviridae. The Journal of General Virology 2008, 89:1739-1747.
48. Codoñer F.M., Fares M.A., Elena S.F. Adaptive covariation between the coat and movement proteins of Prunus necrotic ringspot virus. Journal of Virology 2006, 80:5833-5840.
49. Cooper B., Schmitz I., Rao A.L.N., Beachy R.N., Dodds J.A. Cell-to-cell transport of movement-defective cucumber mosaic and tobacco mosaic viruses in transgenic plants expressing heterologous movement protein genes. Virology 1996, 216:208-213.
50. Dardick C. Comparative expression profiling of Nicotiana benthamiana leaves systemically infected with three fruit tree viruses. Molecular Plant-Microbe Interactions 2007, 20:1004-1017.
51. Daros J.A., Carrington J.C. RNA binding activity of NIa proteinase of tobacco etch potyvirus. Virology 1997, 237:327-336.
52. Dillingham M.S., Soultanas P., Wiley P., Webb M.R., Wigley D.B. Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase. Proceedings of the National Academy of Science United States of America 2001, 98:8381-8387.
53. Ding S.W., Li W.X., Symons R.H. A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement. The EMBO Journal 1995, 14:5762-5772.
54. Di Terlizzi B., Skrzeczkowski L.J., Mink G.I., Scott S.W., Zimmerman M.T. The RNA 5 of Prunus necrotic ringspot virus is a biologically inactive copy of the 3-UTR of the genomic RNA 3. Archives of Virology 2001, 146:825-833.
55. Door Peeters A. Characterisation of a potential suppressor of RNA silencing of Parietaria mottle virus (PMoV) 2009, Master thesis. Universidad Politecnica de Valencia.
56. Edwardson J.R., Purciful D.E. Relationship of Datura quercina and tobacco streak viruses. Phytopathology 1974, 64:1322-1324.
57. Fajardo T.V., Peiro A., Pallas V., Sanchez-Navarro J. Systemic transport of Alfalfa mosaic virus can be mediated by the movement proteins of several viruses assigned to five genera of the 30K family. The Journal of General Virology 2013, 94:677-681.
58. Fenner F. Classification and nomenclature of viruses: Second report of the international committee on taxonomy of viruses. Intervirology 1976, 7:1.
59. Fernandez-Calviño L., Faulkner C., Maule A. Plasmodesmata as active conduits for virus cell-to-cell movement. Advances in plant virology 2011, 470. Caister Academic Press, Norwich, UK. C. Caranta, M.A. Aranda, M. Tepfer, J.J. Lopez-Moya (Eds.).
60. Fiore N., Fajardo T.V., Prodan S., Herranz M.C., Aparicio F., Montealegre J., et al. Genetic diversity of the movement and coat protein genes of South American isolates of Prunus necrotic ringspot virus. Archives of Virology 2008, 153:909-919.
61. Fonseca F., Neto J.D., Martins V., Nolasco G. Genomic variability of Prune dwarf virus as affected by agricultural practice. Archives of Virology 2005, 150:1607-1619.
62. Francki R.I.B., Milne R.G., Hatta T. Ilarvirus group. Atlas of plant viruses 1985, Vol. 2:81-91. CRC Press Inc., Boca Raton, FL.
63. Fujita M., Mise K., Kajiura Y., Dohi K., Furusawa I. Nucleic acid-binding properties and subcellular localization of the 3a protein of brome mosaic bromovirus. The Journal of General Virology 1998, 79:1273-1280.
64. Fulton R.W. Relationships among the ringspot viruses of Prunus. Tagungsberichte Nr. 97 Deutsche Demokratische Republik Deutsche Akademie Der Landwirtschaftswissenschaten Zu Berlin 1968, 97:123-128.
65. Galipienso L., Herranz M.C., Lopez C., Pallas V., Aramburu J. Sequence analysis within the RNA 3 of seven Spanish tomato isolates of Parietaria mottle virus (PMoV-T) reveals important structural differences with the Parietaria isolates (PMoV). European Journal of Plant Pathology 2008, 120:125-135.
66. Ge X., Scott S.W., Zimmerman M.T. The complete sequence of the genomic RNAs of spinach latent virus. Archives of Virology 1997, 142:1213-1226.
67. Gerola F.M., Bassi M., Belli G. An electron microscope study of different plants infected with grapevine fanleaf virus. Giornale Botanico Italiano 1969, 103:271-290.
68. Girgis S.M., Bem F.P., Dovas C.I., Sclavounos A., Avgelis A.D., Tsagris M., et al. Characterisation of a novel ilarvirus causing grapevine angular mosaic disease. European Journal of Plant Pathology 2009, 125:203-221.
69. Glasa M., Betinová E., Kúdela O., Subr Z. Biological and molecular characterization of Prunus necrotic ringspot virus isolates and possible approaches to their phylogenetic typing. The Annals of Applied Biology 2002, 140:279-283.
70. Goldbach R., Le Gall O., Wellinck J. Alpha-like viruses in plants. Seminars in Virology 1991, 2:19-25.
71. Gomez G., Pallas V. Identification of an in vitro ribonucleoprotein complex between a viroid RNA and a phloem protein from cucumber plants. Molecular Plant-Microbe Interactions 2001, 14:910-913.
72. Gonsalves D., Fulton R.W. Activation of prunus necrotic ringspot virus and rose mosaic virus by RNA 4 components of some ilarviruses. Virology 1977, 81:398-407.
73. Gonsalves D., Garnsey S.M. Infectivity of heterologous RNA-protein mixtures from alfalfa mosaic, citrus leaf rugose, citrus variegation, and tobacco streak viruses. Virology 1975, 67:319-326.
74. Gorbalenya A.E., Koonin E.V. Helicases- amino-acid-sequence comparisons and structure-function-relationships. Current Opinion in Structural Biology 1993, 3:419-429.
75. Gorbalenya A.E., Pringle F.M., Zeddam J.L., Luke B.T., Cameron C.E., Kalmakoff J., et al. The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage. Journal of Molecular Biology 2002, 324:47-62.
76. Gottlieb A.R., Berbee J. Detection of apple mosaic virus on pistils and pollens of white birch and its seed transmission in cowpea 1973, 0929.
77. Gramstat A., Courtpozanis A., Rohde W. The 12kDa protein of potato virus M displays properties of a nucleic acid-binding regulatory protein. FEBS Letters 1990, 276:34-38.
78. Greber R.S., Klose M.J., Milne J.R., Teakle D.S. Transmission of Prunus necrotic ringspot virus using plum pollen and thrips. The Annals of Applied Biology 1991, 118:589-593.
79. Greber R.S., Teakle D.S., Mink G.I. Thrips-facilitated transmission of Prune dwarf and Prunus necrotic ringspot viruses from cherry pollen to cucumber. Plant Disease 1992, 76:1039-1041.
80. Gu B., Liu C., Lin-Goerke J., Maley D.R., Gutshall L.L., Feltenberger C.A., et al. The RNA helicase and nucleotide triphosphatase activities of the bovine viral diarrhea virus NS3 protein are essential for viral replication. Journal of Virology 2000, 74:1794-1800.
81. Guo H.-S., Ding S.W. A viral protein inhibits the long-range signaling of activity of the gene silencing signal. The EMBO Journal 2002, 21:398-407.
82. Guogas L.M., Filman D.J., Hogle J.M., Gehrke L. Cofolding organizes alfalfa mosaic virus RNA and coat protein for replication. Science 2004, 306:2108-2111.
83. Halk E.L., Fulton R.W. Stabilization and particle morphology of prune dwarf virus. Virology 1978, 91:434-443.
84. Halk E.L., Hsu H.T., Aebig J., Franke J. Production of monoclonal antibodies against three ilarviruses and alfalfa mosaic virus and their use in serotyping. Phytopathology 1984, 74:367-372.
85. Hammond R.W. Phylogeny of isolates of Prunus necrotic ringspot virus from the Ilarvirus ring test and identification of group-specific features. Archives of Virology 2003, 148:1195-1210.
86. Herranz M.C., Al Rwahnih M., Sánchez-Navarro J.A., Elena S.F., Choueiri E., Myrta A., et al. Low genetic variability in the coat and movement proteins of American plum line pattern virus isolates from different geographic origins. Archives of Virology 2008, 153:367-373.
87. Herranz M.C., Niehl A., Rosales M., Fiore N., Zamorano A., Granell, Pallas V. A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by Prunus necrotic ringspot virus and Peach latent mosaic viroid. Virology Journal 2013, 10:164.
88. Herranz M.C., Pallas V. RNA-binding properties and mapping of the RNA-binding domain from the movement protein of Prunus necrotic ringspot virus. The Journal of General Virology 2004, 85:761-768.
89. Herranz M.C., Pallas V., Aparicio F. Multifunctional roles for the N-terminal basic motif of Alfalfa mosaic virus coat protein: Nucleolar/cytoplasmic shuttling, modulation of RNA-binding activity and virion formation. Molecular Plant-Microbe Interactions 2012, 25:1093-1103.
90. Herranz M.C., Sanchez-Navarro J.A., Sauri A., Mingarro I., Pallas V. Mutational analysis of the RNA-binding domain of the Prunus necrotic ringspot virus (PNRSV) movement protein reveals its requirement for cell-to-cell movement. Virology 2005, 339:31-41.
91. Houser-Scott F., Baer M.L., Liem K.F., Cai J.M., Gehrke L. Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3' untranslated region of alfalfa mosaic virus RNA 4. Journal of Virology 1994, 68:2194-2205.
92. Houwing C.J., Jaspars E.M.J. Preferential binding of 3'-terminal fragments of alfalfa mosaic virus RNA 4 to virions. Biochemistry 1980, 19:5261-5264.
93. Hull R. Matthews' plant virology 2002, Vol. 4. Academic Press, New York.
94. Ibrahim A., Hutchens H.M., Berg R.H., Loesch-Fries L.S. Alfalfa mosaic virus replicase proteins, P1 and P2, localize to the tonoplast in the presence of virus RNA. Virology 2012, 433:449-461.
95. Imed A., Boscia D., Boari A., Saldarelli P., Digiaro M., Savino V. Comparison of apple mosaic virus isolates from prunus trees and production of specific monoclonal antibodies. EPPO Bulletin 1997, 27:563-564.
96. James D., Varga A., Leippi L., Godkin S., Masters C. Sequence analysis of RNA 2 and RNA 3 of lilac leaf chlorosis virus: A putative new member of the genus Ilarvirus. Archives of Virology 2010, 155:993-998.
97. Jaspars E.M.J. A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved on other Bromoviridae. Virus Genes 1988, 17:233-242.
98. Johansen E., Edwards M.C., Hampton R.O. Seed transmission of viruses-Current perspectives. Annual Review of Phytopathology 1994, 32:363-386.
99. Johnson J. Tobacco streak, a virus disease. Phytopathology 1936, 26:285-292.
100. Jones A.T. Serological relationship between hydrangea mosaic (HyMV) and Elm mottle (EmotV) viruses 1985, 190.
101. Jones A.T., Mayo M.A. Purification and properties of Elm mottle virus. The Annals of Applied Biology 1973, 75:347-357.
102. Jovel J., Walker M., Sanfaçon H. Recovery of Nicotiana benthamiana plants from a necrotic response induced by a nepovirus is associated with RN silencing but not with reduced virus titer. Journal of Virology 2007, 81:12285-12297.
103. Kim S.H., Kalinina N.O., Andreev I., Ryabov E.V., Fitzgerald A.G., Taliansky M.E., et al. The C-terminal 33 amino acids of the cucumber mosaic virus 3a protein affect virus movement, RNA binding and inhibition of infection and translation. The Journal of General Virology 2004, 85:221-230.
104. King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. 2012, Elsevier, London.
105. Klose M.J., Sdoodee R., Teakle D.S., Milne J.R., Greber R.S., Walter G.H. Transmission of three strains of tobacco streak ilarvirus by different thrips species using virus-infected pollen. Journal of Phytopathology 1996, 144:281-284.
106. Koonin E.V. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. The Journal of General Virology 1991, 72(Pt. 9):2197-2206.
107. Lakshmi V., Hallan V., Ram R., Ahmed N., Zaidi A., Varma A. Diversity of Apple mosaic virus isolates in India based on coat protein and movement protein genes. Indian Journal of Virology 2011, 22:44-49.
108. Lehoczky J., Boscia D., Martelli G.P., Burgyán J., Castellano M.A., Beczner L., et al. Occurrence of the line pattern hitherto unknown virus disease of grapevine in Hungary (in Hungarian). Horticulture 1987, 19:61-79.
109. Li Q.B., Palukaitis P. Comparison of the nucleic acid- and NTP-binding properties of the movement protein of cucumber mosaic cucumovirus and tobacco mosaic tobamovirus. Virology 1996, 216:71-79.
110. Li Y.I., Shih T.W., Hsu Y.H., Han Y.T., Huang Y.L., Meng M. The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5' cap structure by exhibiting RNA 5'-triphosphatase activity. Journal of Virology 2001, 75:12114-12120.
111. Lucas W.J. Plant viral movement proteins: Agents for cell-to-cell trafficking of viral genomes. Virology 2006, 344:169-184.
112. Lucy A.P., Guo H.S., Li W.X., Ding S.W. Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus. The EMBO Journal 2000, 19:1672-1680.
113. MacFarlane S.A., McDavin W.J. Genome activation by raspberry bushy dwarf virus coat protein. The Journal of General Virology 2009, 90:747-753.
114. Maliogka V.I., Dovas C.I., Katis N.I. Demarcation of ilarviruses based on the phylogeny of RNA2-encoded RdRp and generic ramped annealing RT-PCR. Archives of Virology 2007, 152:1687-1698.
115. Marcos J.F., Vilar M., Perez-Paya E., Pallas V. In vivo detection, RNA-binding properties and characterization of the RNA-binding domain of the p7 putative movement protein from carnation mottle carmovirus (CarMV). Virology 1999, 255:354-365.
116. Maroon-Lango C.J., Aebig J., Hammond J. Molecular and biological characterization of a novel ilarvirus in bacopa. Phytopathology 2006, 96:S73.
117. Martinez-Gil L., Sanchez-Navarro J.A., Cruz A., Pallas V., Perez-Gil J., Mingarro I. Plant virus cell-to-cell movement is not dependent on the transmembrane disposition of its movement protein. Journal of Virology 2009, 83:5535-5543.
118. Matthews R.E.F. Plant virology 1991, Academic Press, New York.
119. Maule A.J., Wang D.W. Seed transmission of plant viruses: A lesson in biological complexity. Trends in Microbiology 1996, 4:153-158.
120. Melcher U. The '30K' superfamily of viral movement proteins. The Journal of General Virology 2000, 81:257-266.
121. Menzel W., Hamacher J., Weissbrodt S., Winter S. Complete nucleotide sequence of the RNA 3 of Bacopa chlorosis virus and production of polyclonal antibodies to a recombinant coat protein. Journal of Phytopathology 2012, 160:163-165.
122. Mink G.I. Pollen-transmitted and seed-transmitted viruses and viroids. Annual Review of Phytopathology 1993, 31:375-402.
123. Mink G.I., Aichele M.D. Detection of prunus necrotic ringspot and prune dwarf viruses in prunus seed and seedlings by enzyme-linked immunosorbent-assay. Plant Disease 1984, 68:378-381.
124. Murphy F.A., Fauquet C.M., Bishop D.H.L., Ghabrial S.A., Jarvis A.W., Martelli G.P., et al. Virus taxonomy: Classification and nomenclature of viruses 1995, 450-457. Springer, Wein, NY, Arch. Virol. [Suppl. 10].
125. Nagano H., Okuno T., Mise K., Furusawa I. Deletion of the C-terminal 33 amino acids of cucumber mosaic virus movement protein enables a chimeric brome mosaic virus to move from cell to cell. Journal of Virology 1997, 71:2270-2276.
126. Nagy P.D. Yeast as a model host to explore plant virus-host interactions. Annual Review of Phytopathology 2008, 46:217-242.
127. Nemeth M. Virus, mycoplasma and Rickettsia diseases of fruit trees 1986, 841. Martinus NijHoff, Dordrecht.
128. Oliver J.E., Freer J., Andersen R.L., Cox K.D., Robinson T.L., Fuchs M. Genetic diversity of Prunus necrotic ringspot virus isolates within a cherry orchard in New York. Plant Disease 2009, 93:599-606.
129. Olsthoorn R.C.L., Mertens S., Brederode T.B., Bol J.F. A conformational switch at the 3'end of a plant virus RNA regulates viral replication. The EMBO Journal 1999, 18:4856-4864.
130. Pallas V., Aparicio F., Herranz M.C., Amari K., Sanchez-Pina M.A., Myrta A., et al. Ilarviruses of Prunus spp.: A continued concern for fruit trees. Phytopathology 2012, 102:1108-1120.
131. Pallas V., Garcia J.A. How do plant viruses induce disease? Interactions and interference with host components. The Journal of General Virology 2011, 92:2691-2705.
132. Pallas V., Genoves A., Sánchez-Pina M.A., Navarro J.A. Systemic movement of viruses via the plant phloem. Recent advances in plant virology 2011, 75-101. Caister Academic Press, Norfolk, UK. C. Caranta, M.G. Aranda, M. Tepfer, J.J. López-Moya (Eds.).
133. Pallas V., Sanchez-Navarro J.A., Diez J. In vitro evidence for RNA binding properties of the coat protein of prunus necrotic ringspot ilarvirus and their comparison to related and unrelated viruses. Archives of Virology 1999, 144:797-803.
134. Petrillo J.E., Rocheleau G., Kelley-Clarke B., Gehrke L. Evaluation of the conformational switch model for Alfalfa mosaic virus RNA replication. Journal of Virology 2005, 79:5743-5751.
135. Poch O., Sauvaget I., Delarue M., Tordo N. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. The EMBO Journal 1989, 8:3867-3874.
136. Postnikova O.A., Nemchinov L.G. Comparative analysis of microarray data in Arabidopsis transcriptome during compatible interactions with plant viruses. Virology Journal 2012, 9:101.
137. Reusken C.B.E.M., Bol J.F. Structural elements of the 3'-terminal coat protein binding site in alfalfa mosaic virus RNAs. Nucleic Acids Research 1996, 24:2660-2665.
138. Reusken C.B.E.M., Neeleman L., Bol J.F. The 3'-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein. Nucleic Acids Research 1994, 22:1346-1353.
139. Ritzenthaler C., Hofmann C. Tubule-guide movement of plant viruses. Viral transport in plants 2007, 63-83. Springer, Berlin. E. Waigmann, M. Heinlein (Eds.).
140. Robert-Seilaniantz A., Grant M., Jones J.D.G. Hormone crosstalk in plant disease and defense: More than just jasmonate-salycylate antagonism. Annual Review of Phytopathology 2011, 49:317-343.
141. Rozanov M.N., Koonin E.V., Gorbalenya A.E. Conservation of the putative methyltransferase domain: A hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. The Journal of General Virology 1992, 73:2129-2134.
142. Sánchez-Navarro J.A., Bol J.F. Role of the Alfalfa mosaic virus movement protein and coat protein in virus transport. Molecular Plant-Microbe Interactions 2001, 14:1051-1062.
143. Sánchez-Navarro J.A., Fajardo T., Zicca S., Pallas V., Stavolone L. Caulimoviridae tubule-guided transport is dictated by movement protein properties. Journal of Virology 2010, 84:4109-4112.
144. Sánchez-Navarro J.A., Herranz M.C., Pallas V. Cell-to-cell movement of Alfalfa mosaic virus can be mediated by the movement proteins of Ilar-, bromo-, cucumo-, tobamo- and comoviruses and does not require virion formation. Virology 2006, 346:66-73.
145. Sánchez-Navarro J., Miglino R., Ragozzino A., Bol J.F. Engineering of alfalfa mosaic virus RNA 3 into an expression vector. Archives of Virology 2001, 146:923-939.
146. Sánchez-Navarro J.A., Pallás V. Nucleotide sequence of apple mosaic ilarvirus RNA 4. The Journal of General Virology 1994, 75:1441-1445.
147. Sánchez-Navarro J.A., Pallás V. Phylogenetical relationships in the ilarviruses: Nucleotide sequence of prunus necrotic ringspot RNA 3. Archives of Virology 1997, 142:749-763.
148. Sánchez-Navarro J.A., Reusken C.B.E.M., Bol J.F., Pallas V. Replication of alfalfa mosaic virus RNA 3 with movement and coat protein genes replaced by corresponding genes of Prunus necrotic ringspot ilarvirus. The Journal of General Virology 1997, 78:3171-3176.
149. Schmitt R.A., Williams H., Nyland G. Virus diseases can decrease peach yields. Cling Peach Quarterly 1977, 13:17-19.
150. Scott S.W., Zimmerman M.T. American plum line pattern virus is a distinct ilarvirus. Acta Horticulturae 2001, 550:221-227.
151. Scott S.W., Zimmerman M.T. The complete nucleotide sequence of the genome of Humulus japonicus latent virus. Archives of Virology 2006, 151:1683-1687.
152. Scott S.W., Zimmerman M.T. Partial nucleotide sequences of the RNA 1 and RNA 2 of lilac ring mottle confirm that this virus should be considered a member of subgroup 2 of the genus Ilarvirus. Archives of Virology 2008, 153:2169-2172.
153. Scott S.W., Zimmerman M.T., Ge X. Viruses in subgroup 2 of the genus Ilarvirus share both serological relationships and characteristics at the molecular level. Archives of Virology 2003, 148:2063-2075.
154. Scott S.W., Zimmerman M.T., Yilmaz S., Bachman E.J., Zehr E.I. The interaction between Prunus necrotic ringspot virus and Prune dwarf virus in peach stunt disease. Acta Horticulturae 2001, 550:229-236.
155. Shepherd R.J., Francki R.I.B., Hirth L., Hollings M., Inouye T., MacLeod R., et al. New groups of plant viruses approved by the International Committee on Taxonomy of Viruses. Intervirology 1976, 6:181-184.
156. Shiel P.J., Alrefai R.H., Domier L.L., Korban S.S., Berger P.H. The complete nucleotide sequence of Apple mosaic virus RNA-3. Archives of Virology 1995, 140:1247-1256.
157. Shimura H., Masuta C., Yoshida N., Sueda K., Suzuki M. The 2b protein of Asparagus virus 2 functions as an RNA silencing suppressor against systemic silencing to prove functional synteny with related cucumoviruses. Virology 2013, In press.
158. Siegel R.W., Adkins S., Kao C.C. Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase. Proceedings of the National Academy of Science United States of America 1997, 94:11238-11243.
159. Silva C., Tereso S., Nolasco G., Oliveira M.M. Cellular location of Prune dwarf virus in almond sections by in situ reverse transcription-polymerase chain reaction. Phytopathology 2003, 93:278-285.
160. Silvestre R., Untiveros M., Cuellar W.J. First report of Potato yellowing virus (Genus Ilarvirus) in Solanum phureja from Ecuador. Plant Disease 2011, 95:355.
161. Smith C.H., Roosien J., van Vloten-Doting L., Jaspars E.M.J. Evidence that alfalfa mosaic virus infection starts with three RNA-protein complexes. Virology 1981, 112:169-173.
162. Spiegel S., Martin R.R., Leggett F., Terborg M., Postman J. Characterization and geographical distribution of a new ilarvirus from Fragaria chiloensis. Phytopathology 1993, 83:991-995.
163. Stefanac Z., Wrischer M. Spinach latent virus: Some properties and comparison of two isolates. Acta Botanica Croatica 1983, 42:1-9.
164. Stewart F.C. Notes on New York plant diseases. New York Agricultural Experiment Station Geneva Technical Bulletin 1910, 328:305-404.
165. Swanson M.M., Ansel-McKinney P., Houser-Scott F., Yusibov V., Loesch-Fries L.S., Gehrke L. Viral coat protein peptides with limited sequence homology bind similar domains of alfalfa mosaic virus and tobacco streak virus RNAs. Journal of Virology 1998, 72:3227-3234.
166. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
167. Tan R., Frankel A.D. Structural variety of arginine-rich RNA-binding peptides. Proceedings of the National Academy of Science United States of America 1995, 92:5282-5286.
168. Taschner P.E., Van der Kuyl A.C., Neeleman L., Bol J.F. Replication of an incomplete alfalfa mosaic virus genome in plants transformed with viral replicase genes. Virology 1991, 181:445-450.
169. Thomas B.J., Barton R.J., Tuszynski A. Hydrangea mosaic-virus, a new ilarvirus from hydrangea-macrophylla (Saxifragaceae). The Annals of Applied Biology 1983, 103:261-270.
170. Tzanetakis I.E., Martin R.R. New features in the genus Ilarvirus revealed by the nucleotide sequence of Fragaria chiloensis latent virus. Virus Research 2005, 112:32-37.
171. Tzanetakis I.E., Martin R.R., Scott S.W. Genomic sequences of blackberry chlorotic ringspot virus and strawberry necrotic shock virus and the phylogeny of viruses in subgroup 1 of the genus Ilarvirus. Archives of Virology 2010, 155:557-561.
172. Ueki S., Citovsky V. Spread throughout the plant: Systemic transport of viruses. Viral transport in plants 2007, 85-118. Springer, Berlin. E. Waigmann, M. Heinlein (Eds.).
173. Uyeda I., Mink G.I. Properties of asparagus virus-Ii, a new member of the ilarvirus group. Phytopathology 1981, 71:1264-1269.
174. Uyeda I., Mink G.I. Relationships among some ilarviruses: Proposed revision of subgroup A. Phytopathology 1983, 73:47-50.
175. Uyemoto G., Scott S.W. Important diseases of Prunus caused by viruses and other graft-transmissible pathogens in California and South Carolina. Plant Disease 1992, 76:5-11.
176. Van der Heijden M.W., Carette J.E., Reinhoud P.J., Haegi A., Bol J.F. Alfalfa mosaic virus replicase proteins P1 and P2 interact and colocalize at the vacuolar membrane. Journal of Virology 2001, 75:1879-1887.
177. Van der Meer F.A., Huttinga H., Maat D.Z. Lilac ring mottle virus: Isolation from lilac, some properties, and relation to lilac ringspot disease. The Netherlands Journal of Plant Pathology 1976, 82:67-80.
178. Van der Vossen E.A., Neeleman L., Bol J.F. Role of the 5' leader sequence of alfalfa mosaic virus RNA 3 in replication and translation of the viral RNA. Nucleic Acids Research 1993, 21:1361-1367.
179. Van der Vossen E.A., Neeleman L., Bol J.F. Early and late functions of alfalfa mosaic virus coat protein can be mutated separately. Virology 1994, 202:891-903.
180. Van Regenmortel M.V.H., Ackermann H.-W., Calisher C.H., Dietzgen R.G., Horzinek M.C., Keil G.M., et al. Virus species polemics: 14 senior virologists oppose a proposed change to the ICTV definition of virus species. Archives of Virology 2013, 158:1115-1119.
181. Van Rossum C.M.A., Garcia M.L., Bol J.F. Accumulation of alfalfa mosaic virus RNAs 1 and 2 requires the encoded proteins in cis. Journal of Virology 1996, 70:5100-5105.
182. Van Vloten-Doting L. Coat protein is required for infectivity of tobacco streak virus: Biological equivalence of the coat proteins of tobacco streak and alfalfa mosaic viruses. Virology 1975, 65:215-225.
183. Van Vloten Doting L., Francki R.I.B., Fulton R.W., Kaper J.M., Lane L.C. Tricornoviridae-A proposed family of viruses with tripartite, single-stranded RNA genomes. Intervirology 1981, 15:198.
184. Vance V.B., Berger P.H., Carrington J.C., Hunt A.G., Shi X.M. 5' Proximal potyviral sequences mediate potato virus X/potyviral synergistic disease in transgenic tobacco. Virology 1995, 206:583-590.
185. Vaskova D., Petrzik K., Karesova R. Variability and molecular typing of the woody-tree infecting Prunus necrotic ringspot ilarvirus. Archives of Virology 2000, 145:699-709.
186. Vaskova D., Petrzik K., Spak J. Molecular variability of the capsid protein of the Prune dwarf virus. European Journal of Plant Pathology 2000, 106:573-580.
187. Velankar S.S., Soultanas P., Dillingham M.S., Subramanya H.S., Wigley D.B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 1999, 97:75-84.
188. Vilar M., Esteve V., Pallas V., Marcos J.F., Perez-Paya E. Structural properties of carnation mottle virus p7 movement protein and its RNA-binding domain. The Journal of Biological Chemistry 2001, 276:18122-18129.
189. Vlot A.C., Laros S.M., Bol J.F. Coordinate replication of alfalfa mosaic virus RNAs 1 and 2 involves cis- and trans-acting functions of the encoded helicase-like and polymerase-like domains. Journal of Virology 2003, 77:10790-10798.
190. Vlot A.C., Menard A., Bol J.F. Role of the alfalfa mosaic virus methyltransferase-like domain in negative-strand RNA synthesis. Journal of Virology 2002, 76:11321-11328.
191. Waigmann E., Ueki S., Trutnyeva K., Citovsky V. The ins and outs of nondestructive cell-to-cell and systemic movement of plant viruses. Critical Reviews in Plant Sciences 2004, 23:195-250.
192. Walter M.H., Kaiser W.J., Klein R.E., Wyatt S.D. Association between tobacco streak ilarvirus seed transmission and anther tissue infection in bean. Phytopathology 1992, 82:412-415.
193. Walter M.H., Wyau S.D., Kaiser W.J. Comparison of the RNAs and some physicochemical properties of the seed-transmitted tobacco streak virus isolate Mel 40 and the infrequently seed-transmitted isolate Mel F. Phytopathology 1995, 85:1394-1399.
194. Wang X.F., Lee W.M., Watanabe T., Schwartz M., Janda M., Ahlquist P. Brome mosaic virus 1a nucleoside triphosphatase/helicase domain plays crucial roles in recruiting RNA replication templates. Journal of Virology 2005, 79:13747-13758.
195. Wellink J., Van Lent J.W.M., Verver J., Sijen T., Goldbach R.W., Van Kammen A.B. The cowpea mosaic virus M RNA-encoded 48-kilodalton protein is responsible for induction of tubular structures in protoplasts. Journal of Virology 1993, 67:3660-3664.
196. Whitham S.A., Quan S., Chang H.S., Cooper B., Estes B., Zhu T., et al. Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. The Plant Journal 2003, 33:271-283.
197. Xin H.W., Ding S.W. Identification and molecular characterization of a naturally occurring RNA virus mutant defective in the initiation of host recovery. Virology 2003, 317:253-262.
198. Xin H.W., Ji L.H., Scott S.W., Symons R.H., Ding S.W. Ilarviruses encode a cucumovirus-like 2b gene that is absent in other genera within the Bromoviridae. Journal of Virology 1998, 72:6956-6959.
199. Yusibov V., Loesch-Fries L.S. Functional significance of three basic N-terminal amino acids of alfalfa mosaic virus coat protein. Virology 1998, 242:1-5.
200. Zheng H.Q., Wang G.L., Zhang L. Alfalfa mosaic virus movement protein induces tubules in plant protoplasts. Molecular Plant-Microbe Interactions 1997, 10:1010-1014.
201. Zuidema D., Bierhuizen M.F.A., Jaspars E.M.J. Removal of the N-terminal part of alfalfa mosaic virus coat protein interferes with the specific binding to RNA 1 and genome activation. Virology 1983, 129:255-260.