Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants

Plant Journal

Volumn 33, Issue 2, 2003, Pages 271-283

  Whitham, Steven A ^a   Quan, Sheng ^b   Chang, Hur Song ^b   Cooper, Bret ^b   Estes, Bram ^b   Zhu, Tong ^b   Wang, Xun ^b   Hou, Yu Ming ^b  

^a IOWA STATE UNIVERSITY   (United States)

^b SYNGENTA BIOTECHNOLOGY INC   (United States)

Author keywords

Gene expression; Heat shock protein; Host; Microarray; Susceptible; Virus

Indexed keywords

CELLS; GENES; PLANTS (BOTANY); RNA; SEED;

MICROARRAY TECHNOLOGY;

VIRUSES;

ARABIDOPSIS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HOST-PARASITE RELATIONS; MULTIGENE FAMILY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT DISEASES; PROMOTER REGIONS (GENETICS); RNA VIRUSES;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA RAPA SUBSP. RAPA; CUCUMBER MOSAIC VIRUS; CUCUMIS SATIVUS; EUKARYOTA; POTATO VIRUS X; POTEXVIRUS; POTYVIRUS; RNA VIRUSES; SOLANUM TUBEROSUM; TOBAMOVIRUS;

EID: 0037261908     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01625.x     Document Type: Article

References (49)

1. Aguilar, I., Sanchez, F., Martin Martin, A., Martinez-Herrera, D. and Ponz, F. (1996) Nucleotide sequence of Chinese rape mosaic virus (oilseed rape mosaic virus), a crucifer tobamovirus infectious on Arabidopsis thaliana. Plant Mol. Biol. 30, 191-197.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
3. Ananthan, J., Goldberg, A.L. and Voellmy, R. (1986) Abnormal proteins serve as eukaryotic stress signals and trigger the activation of heat shock genes. Science, 232, 522-524.
4. Aranda, M.A., Escaler, M., Thomas, C.L. and Maule, A.J. (1999) A heat shock transcription factor in pea is differentially controlled by heat and virus replication. Plant J. 20, 153-161.
5. Aranda, M.A., Escaler, M., Wang, D. and Maule, A.J. (1996) Induction of HSP70 and polyubiquitin expression associated with plant virus replication. Proc. Natl. Acad. Sci. USA, 93, 15289-15293.
6. Baker, B., Zambryski, P., Staskawicz, B. and Dinesh-Kumar, S.P. (1997) Signaling in plant-microbe interactions. Science, 276, 726-733.
7. Barros, M.D., Czarnecka, E. and Gurley, W.B. (1992) Mutational analysis of a plant heat shock element. Plant Mol. Biol. 19, 665-675.
8. Bowling, S.A., Guo, A., Cao, H., Gordon, A.S., Klessig, D.F. and Dong, X. (1994) A mutation in Arabidopsis that leads to constitutive expression of systemic acquired resistance. Plant Cell, 6, 1845-1857.
9. Bucher, G.L., Tarina, C., Heinlein, M., Di Serio, F., Meins, F., Jr and Iglesias, V.A. (2001) Local expression of enzymatically active class I beta-1, 3-glucanase enhances symptoms of TMV infection in tobacco. Plant J. 28, 361-369.
10. Cecchini, E., Gong, Z., Geri, C., Covey, S.N. and Milner, J.J. (1997) Transgenic Arabidopsis lines expressing gene VI from cauliflower mosaic virus variants exhibit a range of symptom-like phenotypes and accumulate inclusion bodies. Mol. Plant Microbe Interact. 10, 1094-1101.
11. Cooper, B. (2001) Collateral gene expression changes induced by distinct plant viruses during the hypersensitive resistance reaction in Chenopodium amaranticolor. Plant J. 26, 339-349.
12. Crawford, K.M. and Zambryski, P.C. (1999a) Plasmodesmata signaling: many roles, sophisticated statutes. Curr. Opin. Plant Biol. 2, 382-387.
13. Crawford, K.M. and Zambryski, P.C. (1999b) Phloem transport: are you chaperoned? Curr. Biol. 9, 281-285.
14. Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 95, 14863-14868.
15. Escaler, M., Aranda, M.A., Thomas, C.L. and Maule, A.J. (2000) Pea embryonic tissues show common responses to the replication of a wide range of viruses. Virology, 267, 318-325.
16. Eulgem, T., Rushton, P.J., Robatzek, S. and Somssich, I.E. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5, 199-206.
17. Geri, C., Cecchini, E., Giannakou, M.E., Covey, S.N. and Milner, J.J. (1999) Altered patterns of gene expression in Arabidopsis elicited by cauliflower mosaic virus (CaMV) infection and by a CaMV gene VI transgene. Mol. Plant Microbe Interact. 12, 377-384.
18. Glotzer, J.B., Saltik, M., Chiocca, S., Michou, A.I., Moseley, P. and Cotten, M. (2000) Activation of heat-shock response by an adenovirus is essential for virus replication. Nature, 407, 207-211.
19. Gutierrez, C. (2000) DNA replication and cell cycle in plants: learning from geminiviruses. EMBO J. 19, 792-799.
20. Hao, D., Ohme-Takagi, M. and Sarai, A. (1998) Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273, 26857-26861.
21. Hills, G.J., Plaskitt, K.A., Young, N.D., Dunigan, D.D., Watts, J.W., Wilson, T.M.A. and Zaitlin, M. (1987) Immunogold localization of the intracellular sites of structural and nonstructural tobacco mosaic virus proteins. Virology, 161, 488-496.
22. Hubel, A., Lee, J.H., Wu, C. and Schoffl, F. (1995) Arabidopsis heat shock factor is constitutively active in Drosophila and human cells. Mol. Gen. Genet. 248, 136-141.
23. Hubel, A. and Schoffl, F. (1994) Arabidopsis heat shock factor: isolation and characterization of the gene and the recombinant protein. Plant Mol. Biol. 26, 353-362.
24. Hughes, J.D., Estep, P.W., Tavazoie, S. and Church, G.M. (2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296, 1205-1214.
25. Jirage, D., Tootle, T.L., Reuber, T.L., Frost, L.N., Feys, B.J., Parker, J.E., Ausubel, F.M. and Glazebrook, J. (1999) Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling. Proc. Natl. Acad. Sci. USA, 96, 13583-13588.
26. Jockusch, H., Wiegand, C., Mersch, B. and Rajes, D. (2001) Mutants of tobacco mosaic virus with temperature-sensitive coat proteins induce heat shock response in tobacco leaves. Mol. Plant Microbe Interact. 14, 914-917.
27. Lartey, R., Ghoshroy, S., Ho, J. and Citovsky, V. (1997) Movement and subcellular localization of a tobamovirus in Arabidopsis. Plant J. 12, 537-545.
28. Lazarowitz, S.G. and Beachy, R.N. (1999) Viral movement proteins as probes for intracellular and intercellular trafficking in plants. Plant Cell, 11, 535-548.
29. Lockhart, D., Dong, H., Byrne, M. et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnol. 14, 1675-1680.
30. Lucas, W.J. and Wolf, S. (1999) Connections between virus movement, macromolecular signaling and assimilate allocation. Curr. Opin. Plant Biol. 2, 192-197.
31. Matthews, R.E.F. (1991) Plant Virology. San Diego: Academic Press, Inc.
32. Menkens, A.E., Schindler, U. and Cashmore, A.R. (1995) The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends Biochem. Sci. 20, 506-510.
33. Roberts, I.M., Wang, D., Findlay, K. and Maule, A.J. (1998) Ultrastructural and temporal observations of the potyvirus cylindrical inclusions (CIs) show that the CI protein acts transiently in aiding virus movement. Virology, 245, 173-181.
34. Sanchez, F., Martinez-Herrera, D., Aguilar, I. and Ponz, F. (1998) Infectivity of turnip mosaic potyvirus cDNA clones and transcripts on the systemic host Arabidopsis thaliana and local lesion hosts. Virus Res. 55, 207-219.
35. Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
36. Schindler, U., Beckmann, H. and Cashmore, A.R. (1992) TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG. Plant Cell, 4, 1309-1319.
37. Schoffl, F., Rieping, M., Baumann, G., Bevan, M. and Angermuller, S. (1989) The function of plant heat shock promoter elements in the regulated expression of chimaeric genes in transgenic tobacco. Mol. Gen. Genet. 217, 246-253.
38. Shinozaki, K. and Yamaguchi-Shinozaki, K. (2000) Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr. Opin. Plant Biol. 3, 217-223.
39. Takahashi, H., Goto, N. and Ehara, Y. (1994) Hypersensitive repsonse in cucumber mosaic-virus infected Arabidopsis thaliana. Plant J. 6, 369-378.
40. Voinnet, O. (2001) RNA silencing as a plant immune system against viruses. Trends Genet. 17, 449-459.
41. Wang, D. and Maule, A.J. (1995) Inhibition of host gene expression associated with plant virus replication. Science, 267, 229-231.
42. Ward, E.R., Uknes, S.J., Williams, S.C., Dincher, S.S., Wiederhold, D.L., Alexander, D.C., Ahl-Goy, P., Metraux, J.-P. and Ryals, J.A. (1991) Coordinate gene activity in response to agents that induce systemic acquired resistance. Plant Cell, 3, 1085-1094.
43. Wells, D.R., Tanguay, R.L., Le, H. and Gallie, D.R. (1998) HSP101 functions as a specific translational regulatory protein whose activity is regulated by nutrient status. Genes Dev. 12, 3236-3251.
44. Yang, Y. and Klessig, D.F. (1996) Isolation and characterization of a tobacco mosaic virus-inducible myb oncogene homolog from tobacco. Proc. Natl. Acad. Sci. USA, 93, 14972-14977.
45. Zhou, N., Tootle, T.L. and Glazebrook, J. (1999) Arabidopsis PAD3, a gene required for camalexin biosynthesis, encodes a putative cytochrome P450 monooxygenase. Plant Cell, 11, 2419-2428.
46. Zhou, N., Tootle, T.L., Tsui, F., Klessig, D.F. and Glazebrook, J. (1998) PAD4 functions upstream from salicylic acid to control defense responses in Arabidopsis. Plant Cell, 10, 1021-1030.
47. Zhu, T., Budworth, P.R., Han, B., Brown, D., Chang, H.S., Zou, G. and Wang, X. (2001) Toward elucidating the global gene expression patterns of developing Arabidopsis: parallel analysis of 8300 genes by a high-density oligonucleotide probe array. Plant Physiol. Biochem. 39, 221-242.
48. Zhu, T. and Wang, X. (2000) Large-scale profiling of the Arabidopsis transcriptome. Plant Physiol. 124, 1472-1476.
49. Zijlstra, C., Scharer-Hernandez, N., Gal, S. and Hohn, T. (1996) Arabidopsis thaliana expressing the cauliflower mosaic virus ORF VI transgene has a late flowering phenotype. Virus Genes, 13, 5-17.