RNA binding activity of NIa proteinase of tobacco etch potyvirus

Virology

Volumn 237, Issue 2, 1997, Pages 327-336

  Daròs, José Antonio ^a   Carrington, James C ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINASE;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; RNA BINDING; TOBACCO;

ESCHERICHIA COLI; NIA; NICOTIANA TABACUM; TOBACCO ETCH VIRUS;

EID: 0030663483     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8802     Document Type: Article

References (59)

1. Allaire M., Chernaia M. M., Malcolm B. A., James M. N. Picornaviral 3C cysteine proteinases have a fold similar to chymotrypsin-like serine proteinases. Nature. 369:1994;72-76.
2. Allison R., Johnston R. E., Dougherty W. G. The nucleotide sequence of the coding region of tobacco etch virus genomic RNA: Evidence for the synthesis of a single polyprotein. Virology. 154:1986;9-20.
3. Andino R., Rieckhof G. E., Achacoso P. L., Baltimore D. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′-end of viral RNA. EMBO J. 12:1993;3587-3598.
4. Andino R., Rieckhof G. E., Baltimore D. A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA. Cell. 63:1990a;369-380.
5. pro. J. Virol. 64:1990b;607-612.
6. Atreya C. D., Atreya P. L., Thornbury D. W., Pirone T. P. Site-directed mutations in the potyvirus HC-PRO gene affect helper component activity, virus accumulation, and symptom expression in infected tobacco plants. Virology. 191:1992;106-111.
7. Atreya C. D., Pirone T. P. Mutational analysis of the helper component-proteinase gene of a potyvirus: Effects of amino acid substitutions, deletions, and gene replacement on virulence and aphid transmissibility. Proc. Natl. Acad. Sci. USA. 90:1993;11919-11923.
8. Bazan J. F., Fletterick R. J. Detection of a trypsin-like serine protease domain in flaviviruses and pestiviruses. Virology. 171:1989;637-639.
9. Brantley J. D., Hunt A. G. The N-terminal protein of the polyprotein encoded by the potyvirus tobacco vein mottling virus is an RNA binding protein. J. Gen. Virol. 74:1993;1157-1162.
10. Burd C. G., Dreyfuss G. Conserved structures and diversity of functions of RNA-binding proteins. Science. 256:1994;615-621.
11. Carrington J. C., Cary S. M., Parks T. D., Dougherty W. G. A second proteinase encoded by a plant potyvirus genome. EMBO J. 8:1989;365-370.
12. Carrington J. C., Dougherty W. G. Processing of the tobacco etch virus 49K protease requires autoproteolysis. Virology. 160:1987a;355-362.
13. Carrington J. C., Dougherty W. G. Small nuclear inclusion protein encoded by a plant potyvirus genome is a protease. J. Virol. 61:1987b;2540-2548.
14. Carrington J. C., Dougherty W. G. A viral cleavage site cassette: Identification of amino acid sequences required for tobacco etch virus polyprotein processing. Proc. Natl. Acad. Sci. USA. 85:1988;3391-3395.
15. Carrington J. C., Freed D. D., Oh C.-S. Expression of potyviral polyproteins in transgenic plants reveals three proteolytic activities required for complete processing. EMBO J. 9:1990;1347-1353.
16. Citovsky V., Knorr D., Zambryski P. Gene I, a potential cell-to-cell movement locus of cauliflower mosaic virus, encodes an RNA-binding protein. Proc. Natl. Acad. Sci. USA. 88:1991;2476-2480.
17. Cronin S., Verchot J., Haldeman-Cahill R., Schaad M. C., Carrington J. C. Long-distance movement factor: A transport function of the potyvirus helper component-proteinase. Plant Cell. 7:1995;549-559.
18. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:1984;387-395.
19. Dougherty W. G., Cary S. M., Parks T. D. Molecular genetic analysis of a plant virus polyprotein cleavage site: A model. Virology. 171:1989a;356-364.
20. Dougherty W. G., Parks T. D. Post-translational processing of the tobacco etch virus 49-kDa small nuclear inclusion polyprotein: Identification of an internal cleavage site and delimitation of VPg and proteinase domains. Virology. 183:1991;449-456.
21. Dougherty W. G., Parks T. D., Cary S. M., Bazan J. F., Fletterick R. J. Characterization of the catalytic residues of the tobacco etch virus 49-kDa proteinase. Virology. 172:1989b;302-310.
22. Dougherty W. G., Semler B. L. Expression of virus-encoded proteinases: Functional and structural similarities with cellular enzymes. Microbiol. Rev. 57:1993;781-822.
23. García J. A., Riechmann J. L., Laín S. Proteolytic activity of the plum pox potyvirus NIa-like protein inEscherichia coli. Virology. 170:1989;362-369.
24. Gorbalenya A. E., Donchenko A. P., Binov V. M., Koonin E. V. Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. FEBS Lett. 243:1989;103-114.
25. Hammerle T., Molla A., Wimmer E. Mutational analysis of the proposed FG loop of poliovirus proteinase 3C identifies amino acids that are necessary for 3CD cleavage and might be determinants of a function distinct from proteolytic activity. J. Virol. 66:1992;6028-6034.
26. pro. J. Biol. Chem. 269:1994;27004-27014.
27. Hellmann G. M., Shaw J. G., Rhoads R. E. In vitro. Virology. 163:1988;554-562.
28. Hong Y., Levay K., Murphy J. F., Klein P. G., Shaw J. G., Hunt A. G. The potyvirus polymerase interacts with the viral coat protein and VPg in yeast cells. Virology. 214:1995;159-166.
29. Kim D. H., Park Y. S., Kim S. S., Lew J., Nam H. G., Choi K. Y. Expression, purification, and identification of a novel self-cleavage site of the NIa C-terminal 27-kDa protease of turnip mosaic potyvirus C5. Virology. 213:1995;517-525.
30. Klein P. G., Klein R. R., Rodríguez-Cerezo E., Hunt A. G., Shaw J. G. Mutational analysis of the tobacco vein mottling virus genome. Virology. 204:1994;759-769.
31. Lama J., Sanz M. A., Rodriguez P. L. A role for 3AB protein in poliovirus genome replication. J. Biol. Chem. 270:1995;14430-14438.
32. Li X. H., Valdez P., Olvera R. E., Carrington J. C. Functions of the tobacco etch virus RNA polymerase (NIb): Subcellular transport and protein-protein interaction with VPg/proteinase (NIa). J. Virol. 71:1997;1598-1607.
33. Maia I. G., Bernardi F. Nucleic acid binding properties of a bacterially expressed potato virus Y helper component-proteinase. J. Gen. Virol. 77:1996;869-877.
34. Masson N., Hurst H. C., Lee K. A. W. Identification of proteins that interact with CREB during differentiation of F9 embryonal carcinoma cells. Nucleic Acids Res. 21:1993;1163-1169.
35. Matthews D. A., Smith W. W., Ferre R. A., Condon B., Budahazi G., Sisson W., Villafranca J. E., Janson C. A., McElroy H. E., Gribskov C. L., Worland S. Structure of human rhinovirus 3C protease reveals a trypsin-like polypeptide fold, RNA-binding site, and a means for cleaving precursor polyprotein. Cell. 77:1994;761-771.
36. pro. J. Biol. Chem. 269:1994;27015-27020.
37. Murphy J. F., Klein P. G., Hunt A. G., Shaw J. G. Replacement of the tyrosine residue that links a potyviral VPg to the viral RNA is lethal. Virology. 220:1996;535-538.
38. Murphy J. F., Rhoads R. E., Hunt A. G., Shaw J. G. The VPg of tobacco etch virus RNA is the 49 kDa proteinase or the N-terminal 24 kDa part of the proteinase. Virology. 178:1990a;285-288.
39. Murphy J. F., Rychlik W., Rhoads R. E., Hunt A. G., Shaw J. G. A tyrosine residue in the small nuclear inclusion protein of tobacco vein mottling virus links the VPg to the viral RNA. J. Virol. 65:1990b;511-513.
40. Parks T. D., Howard E. D., Wolpert T. J., Arp D. J., Dougherty W. G. Expression and purification of a recombinant tobacco etch virus NIa proteinase: Biochemical analysis of the full-length and a naturally occurring truncated proteinase form. Virology. 210:1995;194-201.
41. Pata J. D., Schultz S. C., Kirkegaard K. Functional oligomerization of poliovirus RNA-dependent RNA polymerase. RNA. 1:1995;466-477.
42. pol. J. Biol. Chem. 269:1994;29173-29181.
43. Reichel C., Maas C., Schulze S., Schell J., Steinbiss H. H. Cooperative binding to nucleic acids by barley yellow mosaic bymovirus coat protein and characterization of a nucleic acid-binding domain. J. Gen. Virol. 77:1996;587-592.
44. Restrepo M. A., Freed D. D., Carrington J. C. Nuclear transport of plant potyviral proteins. Plant Cell. 2:1990;987-998.
45. Restrepo-Hartwig M. A., Carrington J. C. Regulation of nuclear transport of a plant potyvirus protein by autoproteolysis. J. Virol. 66:1992;5662-5666.
46. Restrepo-Hartwig M. A., Carrington J. C. The tobacco etch potyvirus 6-kilodalton protein is membrane-associated and involved in viral replication. J. Virol. 68:1994;2388-2397.
47. Riechmann J. L., Laín S., García J. A. The genome-linked protein and 5′ end RNA sequence of plum pox potyvirus. J. Gen. Virol. 70:1989;2785-2789.
48. Riechmann J. L., Laín S., García J. A. Highlights and prospects of potyvirus molecular biology. J. Gen. Virol. 73:1992;1-16.
49. Schaad M. C., Haldeman-Cahill R., Cronin S., Carrington J. C. Analysis of the VPg-Proteinase (NIa) encoded by tobacco etch potyvirus: Effects of mutations on subcellular transport, proteolytic processing and genome amplification. J. Virol. 70:1996;7039-7048.
50. Schaad M. C., Jensen P., Carrington J. C. Formation of plant RNA virus replication complexes on membranes: Role of an endoplasmic reticulum-targeted viral protein. EMBO J. 13:1997;4049-4059.
51. Schoumacher F., Erny C., Berna A., Godefroy-Colburn T., Stussi-Garaud C. Nucleic acid binding properties of the alfalfa mosaic virus movement protein produced in yeast. Virology. 188:1992;896-899.
52. Shahabuddin M., Shaw J. G., Rhoads R. E. Mapping of the tobacco vein mottling virus VPg cistron. Virology. 163:1988;635-637.
53. Soumounou Y., Laliberte J. F. Nucleic acid-binding properties of the P1 protein of turnip mosaic potyvirus produced in Escherichia coli. J. Gen. Virol. 75:1994;2567-2573.
54. Thornbury D. W., Hellmann G. M., Rhoads R. E., Pirone T. P. Purification and characterization of potyvirus helper component. Virology. 144:1985;260-267.
55. Verchot J., Carrington J. C. Debilitation of plant potyvirus infectivity by P1 proteinase-inactivating mutations and restoration by second-site modifications. J. Virol. 69:1995a;1582-1590.
56. Verchot J., Carrington J. C. Evidence that the potyvirus P1 protein functions as an accessory factor for genome amplification. J. Virol. 69:1995b;3668-3674.
57. Verchot J., Koonin E. V., Carrington J. C. The 35-kDa protein from the N-terminus of a potyviral polyprotein functions as a third virus-encoded proteinase. Virology. 185:1991;527-535.
58. Walker P. A., Leong L. E.-C., Porter A. G. Sequence and structural determinants of the interaction between the 5′-noncoding region of picornavirus RNA and rhinovirus protease 3C. J. Biol. Chem. 270:1995;14510-14516.
59. Xiang W., Harris K. S., Alexander L., Wimmer E. Interaction between the 5′-terminal cloverleaf and 3AB/3CDpro of poliovirus is essential for RNA replication. J. Virol. 69:1995;3658-3667.