Genetic diversity of the movement and coat protein genes of South American isolates of Prunus necrotic ringspot virus

Archives of Virology

Volumn 153, Issue 5, 2008, Pages 909-919

  Fiore, Nicola ^a   Fajardo, Thor V M ^c   Prodan, Simona ^a   Herranz, María Carmen ^b   Aparicio, Frederic ^b   Montealegre, Jaime ^a   Elena, Santiago F ^b   Pallás, Vicente ^b   Sánchez Navarro, Jesús ^b  

^a UNIVERSITY OF CHILE   (Chile)

^b Ciudad Politécnica de la Innovación   (Spain)

^c EMBRAPA UVA E VINHO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

PRUNUS; PRUNUS NECROTIC RINGSPOT VIRUS;

EID: 42449118804     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0066-1     Document Type: Article

References (49)

1. Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105
2. AnselMcKinney P, Scott SW, Swanson M, Ge X, Gehrke L (1996) A plant viral coat protein RNA binding consensus sequence contains a crucial arginine. EMBO J 15:5077-5084
3. Aparicio E, Myrta A, Di Terlizzi B, Pallás V (1999) Molecular variability among isolates of Prunus necrotic ringspot virus from different Prunus spp. Phytopathology 89:991-999
4. Aparicio F, Pallás V (2002) The molecular variability analysis of the RNA 3 of fifteen isolates of Prunus necrotic ringspot virus sheds light on the minimal requirements for the synthesis of its subgenomic RNA. Virus Genes 25:75-84
5. Aparicio F, Sánchez-Navarro JA, Pallás V (2006) In vitro and in vivo mapping of the Prunus necrotic ringspot virus coat protein C-terminal dimerization domain by bimolecular fluorescence complementation. J Gen Virol 87:1745-1750
6. Aparicio F, Sánchez-Pina MA, Sánchez-Navarro JA, Pallás V (1999) Location of Prunus necrotic ringspot ilarvirus within pollen grains of infected nectarine trees: evidence from RT-PCR, dot-blot and in situ hybridisation. Eur J Plant Pathol 105:623-627
7. Aparicio F, Vilar M, Perez-Paya E, Pallás V (2003) The coat protein of Prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA. Virology 313:213-223
8. Baer ML, Houser F, Loesch-Fries LS, Gehrke L (1994) Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein. EMBO J 13:727-735
9. Bol JF (2005) Replication of alfamo- and ilarviruses: role of the coat protein. Annu Rev Phytopathol 43:39-62
10. Choi JW, Loesch-Fries LS (1999) Effect of C-terminal mutations of alfalfa mosaic virus coat protein on dimer formation and assembly in vitro. Virology 260:182-189
11. Codoñer FM, Fares MA, Elena SF (2006) Adaptive covariation between the coat and movement proteins of Prunus necrotic ringspot virus. J Virol 80:5833-5840
12. Cole A, Mink GI, Regev S (1982) Location of Prunus necrotic ringspot virus on pollen grains from infected almond and cherry trees. Phytopathology 72:1542-1545
13. Crosslin JM, Mink GI (1992) Biophysical differences among Prunus necrotic ringspot ilarviruses. Phytopathology 82:200-206
14. Dal Zotto A, Nome SF, Di Rienzo JA, Docampo DM (1999) Fluctuations of Prunus necrotic ringspot virus (PNRSV) at various phenological stages in peach cultivars. Plant Dis 83:1055-1057
15. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
16. Fajardo TVM, Eiras M, Maciel SC, Daniels J, Nickel O (2004) Detecção e caracterização molecular parcial de Prune dwarf virus e Prunus necrotic ringspot virus em pessegueiros. Summa Phytopathologica 30:286-289
17. Fujita M, Mise K, Furusawa I (1999) Expression and characterization of the 3a movement protein of cowpea chlorotic mottle bromovirus. Arch Virol 144:2449-2456
18. Fujita M, Mise K, Kajiura Y, Dohi K, Furusawa I (1998) Nucleic acid-binding properties and subcellular localization of the 3a protein of brome mosaic bromovirus. J Gen Virol 79:1273-1280
19. Fulton RW (1983) Ilarvirus group. CMI/AAB descriptions of plant viruses no. 275, Wellesbourne, UK
20. George JA, Davidson TR (1964) Further evidence of pollen transmission of necrotic ring spot + sour cherry yellows viruses in sour cherry. Can J Plant Sci 44:383
21. Hamilton RI, Nichols C, Valentine B (1984) Survey for Prunus necrotic ringspot and other viruses contaminating the exine of pollen collected by bees. Can J Plant Pathol 6:196-199
22. Hammond RW (2003) Phylogeny of isolates of Prunus necrotic ringspot virus from the Ilarvirus ringtest and identification of group-specific features. Arch Virol 148:1195-1210
23. Hammond RW, Crosslin JM (1998) Virulence and molecular polymorphism of Prunus necrotic ringspot virus isolates. J Gen Virol 79:1815-1823
24. Helguera PR, Taborda R, Docampo DM, Ducasse DA (2001) Immunocapture reverse transcription-polymerase chain reaction combined with nested PCR greatly increases the detection of Prunus necrotic ring spot virus in the peach. J Virol Methods 95:93-100
25. Herranz MC, Al Rwahnih M, Sánchez-Navarro JA, Elena SF, Choueiri E, Myrta A, Pallás V (2007) Low genetic variability in the coat and movement proteins of American plum line pattern virus isolates from different geographic origins. Arch Virol (in press)
26. Herranz MC, Pallás V (2004) RNA-binding properties and mapping of the RNA-binding domain from the movement protein of Prunus necrotic ringspot virus. J Gen Virol 85:761-768
27. Herranz MC, Sánchez-Navarro JA, Sauri A, Mingarro I, Pallás V (2005) Mutational analysis of the RNA-binding domain of the Prunus necrotic ringspot virus (PNRSV) movement protein reveals its requirement for cell-to-cell movement. Virology 339:31-41
28. Herrera MG, Madariaga M (2002) Incidencia de los virus Prunus necrotic ringspot virus (PNRSV), Prune dwarf virus (PDV), Tomato ringspot virus (ToRSV) y Plum pox virus (PPV) en viveros de frutales de carozo en la zona central de Chile. Agricult Técnica 62:38-45
29. Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
30. Kelley RD, Cameron HR (1986) Location of prune dwarf and Prunus necrotic ringspot viruses associated with sweet cherry pollen and seed. Phytopathology 76:317-322
31. Kim SH, Kalinina NO, Andreev I, Ryabov EV, Fitzgerald AG, Taliansky ME, Palukaitis P (2004) The C-terminal 33 amino acids of the cucumber mosaic virus 3a protein affect virus movement, RNA binding and inhibition of infection and translation. J Gen Virol 85:221-230
32. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
33. Li QB, Palukaitis P (1996) Comparison of the nucleic acid- and NTP-binding properties of the movement protein of cucumber mosaic cucumovirus and tobacco mosaic tobamovirus. Virology 216:71-79
34. MacKenzie DJ, Mclean MA, Mukerji S, Green M (1997) Improved RNA extraction from woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction. Plant Dis 81:222-226
35. Maeso Tozzi TC, Tanaka H, Soria J (1995) Studies on fruit tree viruses in Uruguay. Acta Hortic 386:155-164
36. Melcher U (2000) The '30K' superfamily of viral movement proteins. J Gen Virol 81:257-266
37. Mink GI (1992) Prunus necrotic ringspot virus. In: Kumer J, Chaube HS, Singh US, Mukhadpadhyay AN (eds) Plant diseases of international importance, vol III. Prentice Hall, New York, pp 335-356
38. Nemeth M (1986) Virus, mycoplasms and rickettsias diseases of fruit trees. Budapest, Hungary
39. Pond SLK, Frost SDW (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22:1208-1222
40. Sánchez-Navarro JA, Herranz MC, Pallás V (2006) Cell-to-cell movement of Alfalfa mosaic virus can be mediated by the movement proteins of Ilar-, bromo-, cucumo-, tobamo- and comoviruses and does not require virion formation. Virology 346:66-73
41. Sánchez-Navarro JA, Bol JF (2001) Role of the Alfalfa mosaic virus movement protein and coat protein in virus transport. Mol Plant-Microbe Interact 14:1051-1062
42. Sánchez-Navarro JA, Pallás V (1997) Evolutionary relationships in the ilarviruses: nucleotide sequence of Prunus necrotic ringspot virus RNA 3. Arch Virol 142:749-763
43. Sánchez-Navarro JA, Reusken CBEM, Bol JF, Pallás V (1997) Replication of alfalfa mosaic virus RNA 3 with movement and coat protein genes replaced by corresponding genes of Prunus necrotic ringspot ilarvirus. J Gen Virol 78:3171-3176
44. Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
45. Schoumacher F, Giovane C, Maira M, Poirson A, Godefroy CT, Berna A (1994) Mapping of the RNA-binding domain of the alfalfa mosaic virus movement protein. J Gen Virol 75:3199-3202
46. Scott SW, Zimmerman MT, Ge X, MacKenzie DJ (1998) The coat proteins and putative movement proteins of isolates of Prunus necrotic ringspot virus from different host species and geographic origins are extensively conserved. Eur J Plant Pathol 104:155-161
47. Spiegel S, Tam Y, Maslenin L, Kolber M, Nemeth M, Rosner A (1999) Typing Prunus necrotic ringspot virus isolates by serology and restriction endonuclease analysis of PCR products. Ann Appl Biol 135:395-400
48. Vasková D, Petrzik K, Karesova R (2000) Variability and molecular typing of the woody-tree infecting Prunus necrotic ringspot ilarvirus. Arch Virol 145:699-709
49. Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92:371-373