Chryseobacterium yeoncheonense sp. nov., with ginsenoside converting activity isolated from soil of a ginseng field

Archives of Microbiology

Volumn 195, Issue 7, 2013, Pages 463-471

  Hoang, Van An ^a   Kim, Yeon Ju ^a   Nguyen, Ngoc Lan ^a   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

Author keywords

Bacteroidetes; Chryseobacterium yeoncheonense; Ginsenoside bioconversion; Taxonomy

Indexed keywords

BETA GLUCOSIDASE; CARBENICILLIN; CEFAZOLIN; CEFTAZIDIME; ERYTHROMYCIN; FARNOQUINONE; FATTY ACID; GINSENOSIDE; GINSENOSIDE RB 1; MENAQUINONE; MENAQUINONE 7; NEOMYCIN; NOVOBIOCIN; OLEANDOMYCIN; PENICILLIN G; RIFAMPICIN; RNA 16S; TETRACYCLINE; UNCLASSIFIED DRUG; VANCOMYCIN;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BIOTRANSFORMATION; CHRYSEOBACTERIUM; CHRYSEOBACTERIUM GINSENOSIDIMUTANS; CHRYSEOBACTERIUM YEONCHEONENSE; CONTROLLED STUDY; DNA BASE COMPOSITION; ENZYME ACTIVITY; FLAVOBACTERIACEAE; GENE SEQUENCE; GENUS; GINSENG; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOIL; SOUTH KOREA; TAXONOMY;

ANTI-BACTERIAL AGENTS; BASE COMPOSITION; BIOTRANSFORMATION; CHRYSEOBACTERIUM; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; GINSENOSIDES; MOLECULAR SEQUENCE DATA; PANAX; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

BACTERIA (MICROORGANISMS); BACTEROIDETES; CHRYSEOBACTERIUM; FLAVOBACTERIACEAE; MASTIGOPHORA (FLAGELLATES); PANAX GINSENG;

EID: 84879414897     PISSN: 03028933     EISSN: 1432072X     Source Type: Journal    
DOI: 10.1007/s00203-013-0898-2     Document Type: Article

References (50)

1. Anzai Y, Kudo Y, Oyaizu H (1997) The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. Int J Syst Bacteriol 47:249-251
2. Bauer AW, Kirby WM, Sherris JC, Turck M (1966) Antibiotic susceptibility testing by a standardized single disk method. Am J ClinPathol 45:493-496
3. Bernardet J-F, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049-1070
4. Bernardet J-F, Hugo C, Bruun B (2006) The genera Chryseobacterium and Elizabethkingia. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes: a handbook on the biology of bacteria, vol 7, 3rd edn. Springer, New York, pp 638-676
5. Bernardet J-F, Hugo C, Bruun B (2010) Genus X. Chryseobacterium Vandamme et al. 1994a. In Whitman W (ed) Bergey's manual of systematic bacteriology, vol 4, 2nd edn. The Williams & Wilkins Co., Baltimore. Springer, New York, pp 180-196
6. Busse HJ, Auling G (1988) Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11:1-8
7. Busse H-J, Bunka S, Hensel A, Lubitz W (1997) Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47:698-708
8. Choi KT (2008) Botanical characteristics, pharmacological effects and medicinal components of Korean Panax ginseng C.A. Meyer. Acta Pharmacol Sin 29:1109-1118
9. Christensen WB (1946) Urea decomposition as a means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. J Bacteriol 52:461-466
10. Chun J, Lee J-H, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261
11. Collins MD (1985) Isoprenoid quinone analyses in bacterial classification and identification. In Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics (society for applied bacteriology technical series no. 20). Academic Press, London, pp 267-287
12. Cowan ST, Steel KJ (1974) Manual for the identification of medical bacteria. Cambridge University Press, Cambridge
13. de Beer H, Hugo CJ, Jooste PJ, Willems A, Vancanneyt M, Coenye T, Vandamme P (2005) Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken processing plant. Int J Syst Evol Microbiol 55:2149-2153
14. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid hybridization in micro dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacterial 39:224-229
15. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
16. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
17. Hantsis-Zacharov E, Senderovich Y, Halpern M (2008) Chryseobacterium bovis sp. nov., isolated from raw cow's milk. Int J Syst Evol Microbiol 58:1024-1028
18. Ilardi P, Fernández J, Avendaño-Herrera R (2009) Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish. Int J Syst Evol Microbiol 59:3001-3005
19. Im WT, Yang JE, Kim SY, Yi TH (2011) Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhusvernicifera-cultivated field. Int J Syst Evol Microbiol 61:1430-1435
20. Kämpfer P, Dreyer U, Neef A, Dott W, Busse H-J (2003) Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93-97
21. Kämpfer P, Arun AB, Young C-C, Chen W-M, Sridhar KR, Rekha PD (2010) Chryseobacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems. Int J Syst Evol Microbiol 60:1765-1769
22. Kim KK, Bae HS, Schumann P, Lee ST (2005a) Chryseobacterium daecheongense sp. nov., isolated from freshwater lake sediment. Int J Syst Evol Microbiol 55:133-138
23. Kim KK, Kim M-K, Lim JH, Park HY, Lee ST (2005b) Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol 55:1287-1293
24. Kim MK, Im W-T, Ohta H, Lee M, Lee S-T (2005c) Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J Microbiol 43:152-157
25. Kim MK, Lee JW, Lee KY, Yang DC (2005d) Microbial conversion of major ginsenoside Rb1 to pharmaceutically active minor ginsenoside Rd. J Microbiol 43:456-462
26. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
27. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular 9 evolutionary genetics analysis software. Bioinformatics 17:1244-1245
28. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115-176
29. Lee SS (2007) Korean ginseng (ginseng cultivation), Korean ginseng and T. Research institute. 18-40
30. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39:159-167
31. Minnikin DE, ODonnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241
32. Nguyen NL, Kim YJ, Hoang VA, Min JW, Liang ZQ, Yang DC (2013) Bacillus ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 63:855-860
33. Park JH (2004) Sun ginseng: a new processed ginseng with fortified activity. Food Ind Nutr 9:23-27
34. Park MS, Jung SR, Lee KH, Lee MS, Do JO, Kim SB, Bae KS (2006) Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., isolated from roots of sand-dune plants. Int J Syst Evol Microbiol 56:433-438
35. Park CS, Yoo MH, Noh KH, Oh DK (2010) Biotransformation of ginsenosides by hydrolyzing the sugar moieties of ginsenosides using microbial glycosidases. Appl Microbiol Biotechnol 87:9-19
36. Quan Z-X, Kim KK, Kim M-K, Jin L, Lee S-T (2007) Chryseobacterium caeni sp. nov., isolated from bioreactor sludge. Int J Syst Evol Microbiol 57:141-145
37. Saitou N, Nei M (1987) The neighbour: joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
38. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, De: MIDI Inc
39. Shimomura K, Kaji S, Hiraishi A (2005) Chryseobacterium shigense sp. nov., a yellow-pigmented, aerobic bacterium isolated from a lactic acid beverage. Int J Syst Evol Microbiol 55:1903-1906
40. Skerman VBD (1967) A guide to the identification of the genera of bacteria, 2nd edn. Williams & Wilkins, Baltimore
41. Strahan BL, Failor KC, Batties AM, Hayes PS, Cicconi KM, Mason CT, Newman JD (2003) Chryseobacterium piperi sp. nov., isolated from a freshwater creek. Int J Syst Evol Microbiol 61:2162-2166
42. Sun H, Wang HT, Kwon WS, Kim YJ, In JG, Yang DC (2011) A simple and rapid technique for the authentication of the ginseng cultivar, Yunpoong, using an SNP marker in a large sample of ginseng leaves. Gene 487:75-79
43. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
44. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
45. Vandamme P, Bernardet J-F, Segers P, Kersters K, Holmes B (1994) New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44:827-831
46. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
47. Weon HY, Kim B-Y, Yoo S-H, Kwon S-W, Cho Y-H, Go SJ, Stackebrandt E (2006) Chryseobacterium wanjuense sp. nov., isolated from greenhouse soil in Korea. Int J Syst Evol Microbiol 56:1501-1504
48. Yassin AF, Hupfer H, Siering C, Busse HJ (2010) Chryseobacterium treverense sp. nov., isolated from a human clinical source. Int J Syst Evol Microbiol 60:1993-1998
49. Young CC, Kämpfer P, Shen FT, Lai WA, Arun AB (2005) Chryseobacterium formosense sp. nov., isolated from the rhizosphere of Lactuca sativa L. (garden lettuce). Int J Syst Evol Microbiol 55:423-426
50. Zhao X, Wang J, Li J, Fu L, Gao J, Du X, Bi H, Zhou Y, Tai G (2009) Highly selective biotransformation of ginsenoside Rb1 to Rd by the phytopathogenic fungus Cladosporium fulvum (syn. Fulvia fulva). J Ind Microbiol Biotechnol 36:721-726