Chryseobacterium defluvii sp. nov., isolated from wastewater

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 1, 2003, Pages 93-97

  Kämpfer, Peter ^a   Dreyer, Ute ^b   Neef, Alexander ^a   Dott, Wolfgang ^c   Busse, Hans Jürgen ^d,e  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^c RWTH AACHEN UNIVERSITY   (Germany)

^d UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^e UNIVERSITY OF VIENNA   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

FARNOQUINONE; FATTY ACID DERIVATIVE; LIPID; PHOSPHATIDYLETHANOLAMINE; PHOSPHORUS; POLYAMINE; RIBOSOME RNA; RNA 16S; SPERMIDINE DERIVATIVE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHRYSEOBACTERIUM; CHRYSEOBACTERIUM DEFLUVII; CLASSIFICATION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SEQUENCING BATCH REACTOR; TAXONOMY; WASTE WATER;

BACTEROIDES; BIOREACTORS; CYTOPHAGA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEWAGE;

BACTERIA (MICROORGANISMS); CHRYSEOBACTERIUM; CHRYSEOBACTERIUM DEFLUVII; CHRYSEOBACTERIUM GLEUM; CHRYSEOBACTERIUM INDOLTHETICUM; NEGIBACTERIA; PROKARYOTA;

EID: 17044455468     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02073-0     Document Type: Article

References (28)

1. Bauwens, M. & De Ley, J. (1981). Improvements in the taxonomy of Flavobacterium by DNA:rRNA hybridization. In The Flavobacterium-Cytophaga Group, pp. 27-31. GBF Monograph series no. 5. Edited by H. Reichenbach & O.B. Weeks. Weinheim, Germany: Verlag Chemie.
2. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
3. Busse, H. J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
4. Busse, H.-J., Bunka, S., Hensel, A. & Lubitz, W. (1997). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47, 698-708.
5. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
6. Hamana, K. & Matsuzaki, S. (1990). Occurrence of homospermidine as a major polyamine in the authentic genus Flavobacterium. Can J Microbiol 36, 228-231.
7. Hamana, K. & Matsuzaki, S. (1991). Polyamine distributions in the Flavobacterium-Cytophaga-Sphingobacterium complex. Can J Microbiol 37, 885-888.
8. Hollender, J., Dreyer, U., Kornberger, L., Kämpfer, P. & Dott, W. (2002). Selective enrichment and characterization of a phosphorus-removing bacteria consortium from activated sludge. Appl Microbiol Biotechnol 58, 106-111.
9. Holmes, B., Owen, R. J., Steigerwalt, A. G. & Brenner, D. J. (1984). Flavobacterium gleum, a new species found in human clinical specimens. Int J Syst Bacteriol 34, 21-25.
10. Holmes, B., Steigerwalt, A. G., Weaver, R. E. & Brenner, D. J. (1986). Weeksella zoohelcum sp. nov. (formerly group IIj) from human clinical specimens. Syst Appl Microbiol 8, 191-196.
11. Hugo, C., Segers, P., Hoste, B., Vancanneyt, M. & Kersters, K. (2003). Chryseobacterium joostei sp. nov., isolated from the dairy environment. Int J Syst Evol Microbiol 53 (in press).
12. Kämpfer, P. (1990). Evaluation of the Titertek-Enterobac-Automated System (TTE-AS) for identification of members of the family Enterobacteriaceae. Zentbl Bakteriol 273, 164-172.
13. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
14. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel oil contaminated site including numerical identification of heterotroph water and soil bacteria. Microb Ecol 21, 227-251.
15. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
16. Mudarris, M., Austin, B., Segers, P., Vancanneyt, M., Hoste, B. & Bernardet, J. F. (1994). Flavobacterium scophthalmum sp. nov., a pathogen of turbot (Scophthalmus maximus L.). Int J Syst Bacteriol 44, 447-453.
17. Paster, B. J., Ludwig, W., Weisburg, W. G., Stackebrandt, E., Hespell, R. B., Hahn, C. M., Reichenbach, H., Stetter, K. O. & Woese, C. R. (1985). A phylogenetic grouping of the bacteroides, cytophagas, and certain flavobacteria. Syst Appl Microbiol 6, 34-42.
18. Segers, P., Mannheim, W., Vancanneyt, M., De Brandt, K., Hinz, K.-H., Kersters, K. & Vandamme, P. (1993). Riemerella anatipestifer gen. nov., comb. nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium-Cytophaga rRNA homology group. Int J Syst Bacteriol 43, 768-776.
19. Strunk, O., Gross, O., Reichel, B. & 11 other authors (1999). ARB: a software environment for sequence data. Department of Microbiology, Technische Universität München, Munich, Germany. http://www.mikro.biologie.tu-muenchen.de
20. Tindall, B. J. (1990). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
21. Vancanneyt, M., Vandamme, P., Segers, P., Torck, U., Coopman, R., Kersters, K. & Hinz, K.-H. (1999). Riemerella columbina sp. nov., a bacterium associated with respiratory disease in pigeons. Int J Syst Bacteriol 49, 289-295.
22. Vandamme, P., Bernardet, J.-F., Segers, P., Kersters, K. & Holmes, B. (1994). New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831.
23. Ventosa, A., Marquez, M. C., Kocur, M. & Tindall, B. J. (1993). Comparative study of 'Micrococcus sp.' strains CCM 168 and CCM 1405 and members of the genus Salinicoccus. Int J Syst Bacteriol 43, 245-248.
24. Weisburg, W. G., Oyaizu, Y., Oyaizu, H. & Woese, C. R. (1985). Natural relationship between bacteroides and flavobacteria. J Bacteriol 164, 230-236.
25. Wieser, M., Schumann, P., Martin, K., Altenburger, P., Burghardt, J., Lubitz, W. & Busse, H.-J. (1999). Agrococcus citreus sp. nov., isolated from a medieval wall painting of the chapel of Castle Herberstein (Austria). Int J Syst Bacteriol 49, 1165-1170.
26. Woese, C. R., Yang, D., Mandelco, L. & Stetter, K. O. (1990). The Flexibacter-Flavobacterium connection. Syst Appl Microbiol 13, 161-165.
27. Yabuuchi, E., Kaneko, T., Yano, I., Moss, C. W. & Miyoshi, N. (11983). Sphingobacterium gen. nov., Sphingobacterium spiritivorum comb. nov., Sphingobacterium multivorum comb. nov., Sphingobacterium mizutae sp. nov., and Flavobacterium indologenes sp. nov.: glucose-nonfermenting Gram-negative rods in CDC groups IIK-2 and IIb. Int J Syst Bacteriol 33, 580-598.
28. Yamaguchi, S. & Yokoe, M. (2000). A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl Environ Microbiol 66, 3337-3343.